Labshake search
Citations for Illumina :
201 - 250 of 10000+ citations since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
-
bioRxiv - Genomics 2024Quote: ... using the MiSeq Reagent Kit v2 500-cycles (Illumina). All isolates included in this study are summarised in Supplementary Table 1.
-
bioRxiv - Genetics 2024Quote: ... Libraries for next-generation sequencing were prepared and sequenced with a NovaSeq 6000 instrument (Illumina). Quality of received raw data files was assessed with FastQC and data under quality threshold was removed using Trimmomatic (29) ...
-
bioRxiv - Genetics 2024Quote: Total RNA sequencing was performed by a pair-end strategy for all samples using Novaseq PE150 (Illumina Inc). Raw data is stored in .fastq format (.fq.gz compressed ...
-
The transcriptomic landscape of monosomy X (45,X) during early human fetal and placental developmentbioRxiv - Genetics 2024Quote: ... Libraries were subsequently sequenced on a NovaSeq S2 Flowcell (paired end 2×56bp) (Illumina). All samples in this study were prepared and sequenced at the same time ...
-
bioRxiv - Genetics 2024Quote: ... the high-quality DNA was used to construct a paired-end library (150 bp × 2) and sequenced by Illumina X Ten platform according to standard protocol ...
-
bioRxiv - Genomics 2024Quote: Whole blood DNA methylation was profiled using the Infinium MethylationEPIC BeadChip (Illumina Inc.) in two sets of GS participants at two separate times by the Wellcome Trust Clinical Research Facility ...
-
bioRxiv - Genetics 2024Quote: ... * indicates a phosphorothioate (PTO) linked base) were added and the amplicons were sequenced on the MiSeq system (Illumina). FASTQ sequencing files were analyzed using the branch 1.1 version [50] of a previously described analysis pipeline (https://github.com/rajchari2/ngs_amplicon_analysis) ...
-
bioRxiv - Genomics 2024Quote: ... and size-selected libraries (300-500 bp) were sequenced by 1x 50bp single reads using NovaSeq 6000 instrument (Illumina). Antibodies used for ChIP-Seq are listed in the Key Resources Table.
-
bioRxiv - Genomics 2024Quote: ... Paired-end (150-bp) sequencing of each library (approx. 20 million reads per library) was then performed on the NextSeq 550 platform (Illumina). All library preparation and sequencing procedures were carried out by the Analytical Facility at QIMRB.
-
bioRxiv - Evolutionary Biology 2024Quote: ... The amplified library was sequenced on NovaSeq 6000 (Illumina) with a read length of 2×151 bp.
-
bioRxiv - Evolutionary Biology 2024Quote: ... (Seoul, South Korea) using TruSeq DNA PCR-Free Protocol (Illumina, San Diego, CA) and genome sequencing was performed with the Illumina HiSeq 2000 platform in pair-end mode (2×151bp) ...
-
bioRxiv - Evolutionary Biology 2024Quote: ... Samples were subjected to Illumina’s TruSeq Stranded mRNA library preparation kit and sequenced on NovaSeq 6000 (Illumina, 2×151 bp). In total ∼127 million reads were generated.
-
bioRxiv - Evolutionary Biology 2024Quote: Raw paired reads from Illumina metagenomic data from each sample were merged into a single interleaved file using the reformat.sh script from the BBMap/BBTool package (https://github.com/BioInfoTools/BBMap/blob/master/sh/reformat.sh) ...
-
bioRxiv - Evolutionary Biology 2024Quote: ... and short (Illumina) read sequencing ...
-
bioRxiv - Evolutionary Biology 2024Quote: ... The library was sequenced on NovaSeq 6000 (Illumina) with a read length of 2×151 bp ...
-
Multiple horizontal mini-chromosome transfers drive genome evolution of clonal blast fungus lineagesbioRxiv - Evolutionary Biology 2024Quote: ... Sequencing of mini-chromosomal DNA libraries was carried out on a NextSeq500 system (Illumina). For whole-genome sequencing and de novo assembly generation of the Br62 isolate ...
-
bioRxiv - Evolutionary Biology 2024Quote: ... and the pool was sequenced on the Illumina NovaSeq 6000 (Illumina, CA, USA) on one lane of a NVS300S4 flowcell with v1.5 chemistry producing a total of 3,370,873,981 reads.
-
bioRxiv - Evolutionary Biology 2024Quote: ... NGS libraries were constructed from genomic DNA using the Nextera protocol34 and the Illumina NextSeq 500 platform with 2 x 151 bp runs (Illumina, San Diego, CA, USA). We additionally sequenced with PacBio long-read sequencing on an RSII instrument (Pacific Biosciences ...
-
bioRxiv - Evolutionary Biology 2024Quote: ... Mitochondrial genomes for all individuals in the sister-species dataset were extracted directly from Illumina reads with GetOrganelle v1.7.5.3 (Jin et al ...
-
Multiple horizontal mini-chromosome transfers drive genome evolution of clonal blast fungus lineagesbioRxiv - Evolutionary Biology 2024Quote: ... DNA was eluted from gel plugs and sequencing libraries were prepared using a modified version (custom barcodes) of the Nextera Flex library preparation kit (Illumina). Sequencing of mini-chromosomal DNA libraries was carried out on a NextSeq500 system (Illumina) ...
-
bioRxiv - Evolutionary Biology 2024Quote: ... Libraries were individually created for each clone following a modified Nextera XT DNA Library Prep Kit protocol (Illumina). Tagmentation and amplification was carried out at one-quarter volume with Nextera XT Index Kit v2 adapters ...
-
bioRxiv - Genomics 2024Quote: ... The RNA- seq libraies were sequenced by NovaSeq 6000 (Illumina) to either 2 x 50 bp or 2 x 150 bp reads.
-
bioRxiv - Genomics 2024Quote: Methylation analysis was conducted using the Illumina Infinium chemistry.43 DNAm levels across ∼850,000 CpG sites were measured using the Infinium Methylation EPIC BeadChip (Illumina, Inc.; San Diego, CA). Beta values for CpG sites across the genome were measured according to kit protocols and filtered to remove polymorphic positions ...
-
bioRxiv - Genomics 2024Quote: ... was used for a tagmentation reaction that included 3 µL of 2X TMP buffer and 0.5 µL of Transposome (BLT; CAT # 20015880, Illumina Inc.), incubated in a thermocycler at 53 ℃ for 30 minutes with the lid set at 80 ℃ ...
-
bioRxiv - Genomics 2024Quote: ... The ChIA-PET libraries were sequenced with 150 bps long paired-end reads using NovaSeq 6000 instrument (Illumina).
-
bioRxiv - Genomics 2024Quote: ... Libraries were prepared using the tagment DNA Enzyme and Buffer Large Kit (Illumina), and size-selected libraries (300-500 bp ...
-
bioRxiv - Evolutionary Biology 2024Quote: ... and then sequenced using a Miniseq (Illumina). For CF269 communities ...
-
bioRxiv - Genomics 2024Quote: ... leaf and flower samples from three biological replicates of Huizhan and ZH11 were collected and sequenced on the NovaSeq 6000 platform (Illumina) following the manufacturers’ recommended procedures.
-
bioRxiv - Genomics 2024Quote: ... and 2ng used for tagmentation with the NexteraXT kit (Illumina) per manufacturer’s directions in half volume reactions (25µL total).
-
bioRxiv - Genomics 2024Quote: ... The production-scale sequencing of the Hi-C library was performed on a NextSeq2000 sequencer (Illumina) using 150 bp paired-end read mode at the Berlin Center for Genomics in Biodiversity Research.
-
bioRxiv - Evolutionary Biology 2024Quote: ... we generated libraries following the Illumina TruSeq protocol (Illumina, IP-202-9001DOC), with the introduction of an additional step of kinetic enrichment ...
-
bioRxiv - Evolutionary Biology 2024Quote: ... Libraries for sequencing were prepared with the NEBNext Ultra Directional RNA Library Prep Kit (Illumina), following poly(A ...
-
bioRxiv - Evolutionary Biology 2024Quote: ... sequenced by Illumina, and motifs generated as previously described [91].
-
bioRxiv - Evolutionary Biology 2024Quote: ... Sweden where library preparation and sequencing was performed by the SNP&SEQ Platform using the TruSeq PCRfree DNA library preparation kit (Illumina Inc.). The libraries were sequenced on the NovaSeq 6000 platform ...
-
bioRxiv - Evolutionary Biology 2024Quote: ... Libraries were sequenced on a NovaSeq6000 platform (Illumina) with S4 flow cells by Novogene Europe (Cambridge ...
-
bioRxiv - Evolutionary Biology 2024Quote: ... ligation kit (Illumina, 20040532) according to the manufacturer’s instruction from 35 ng of RNA (except for macaque replicate_2 ...
-
bioRxiv - Genetics 2024Quote: ... 5 μL index primer N7xx and 5 μL index primer S5xx from Nextera XT V2 Index kit (Illumina, FC-131-2001) were used for the total volume of 50 μL ...
-
bioRxiv - Genetics 2024Quote: ... Libraries were sequenced on a NextSeq 2000 machine (Illumina; up to 77 cycles – dual-index ...
-
bioRxiv - Genetics 2024Quote: ... Libraries were pooled equimolarly and sequenced on a NovaSeq 6000 S2 flowcell (Illumina) in paired end 150 mode to yield ∼120-278mio fragments.
-
bioRxiv - Genetics 2024Quote: ... The construction of the amplicon sequencing library was adapted from Illumina’s protocol #15044223 Rev ...
-
bioRxiv - Genetics 2024Quote: ... The 0.2 M NaOH was used to denature the pooled library and PhiX library (Illumina, FC-110-3001). After diluting the libraries with pre-chilled HT1 to 12 pM ...
-
bioRxiv - Immunology 2024Quote: ... The RNA was fragmented and transformed into double-stranded cDNA libraries using the TruSeq RNA Sample Preparation Kit v2 (Illumina), following manufacturer’s protocol ...
-
bioRxiv - Immunology 2024Quote: ... after cluster generation on a cBot station (Illumina). Raw sequencing reads underwent quality control with fastQC 0.11.9 (https://www.bioinformatics.babraham.ac.uk/projects/fastqc/ ...
-
bioRxiv - Immunology 2024Quote: ... Sequencing was performed with 2 x 100 bp read length and 50 million clusters/probe on NovaSeq 6000 (Illumina). Normalization data was provided by CeGat ...
-
bioRxiv - Immunology 2024Quote: ... The resulting pools were sequenced on a NovaSeq 6000 instrument (Illumina, San Diego, CA, USA) in 50 base pair paired-end configuration ...
-
bioRxiv - Immunology 2024Quote: ... After centrifugation at 500ξ g for 5min at 4°C, the cell pellets were resuspended in tagmentation-mix (containing Tagment DNA buffer, Tagment DNA Enzyme (Illumina), Digitonin (Promega ...
-
bioRxiv - Genomics 2024Quote: Sequencing libraries were prepared from 10 -100 ng input DNA using the Nextera DNA flex library prep (Illumina, USA) using IDT for Illumina – Nextera DNA UD Indexes Sets A-D (Illumina ...
-
bioRxiv - Genomics 2024Quote: ... Bacterial isolates and a subset of the aquatic environmental cells were sequenced on the NextSeq 2000 (Illumina), while the remainder libraries from aquatic and soil bacteria were sequenced on the Novaseq 6000 (Illumina ...
-
bioRxiv - Genomics 2024Quote: ... while the remainder libraries from aquatic and soil bacteria were sequenced on the Novaseq 6000 (Illumina) (Supplementary Tables 5 and 6) ...
-
bioRxiv - Genomics 2024Quote: ... using IDT for Illumina – Nextera DNA UD Indexes Sets A-D (Illumina, USA). Fragmentation times and amplification cycles were performed according to the ranges recommended by the manufacturer ...