Labshake search
Citations for Illumina :
151 - 200 of 10000+ citations since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Cancer Biology 2024Quote: ... Sequence reads were demultiplexed and basecalled using “bcl2fastq” (Illumina Inc., San Diego, CA). FASTQ files were aligned to a custom genome (based on the amplicon sequences ...
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bioRxiv - Cancer Biology 2024Quote: ... Paired-end 100 bp sequencing was performed on a HiSeq2500 sequencer (Illumina Inc., San Diego, CA). The analysis of WES data was performed as previously described71 ...
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bioRxiv - Systems Biology 2024Quote: Sequencing at a depth of 50-65 million reads per sample was carried out on an Illumina Nextseq 550 System using a NextSeq 500/550 High Output Kit v2.5 (150 Cycles) (Illumina), per manufacturer protocol for 75 bp paired-end sequencing ...
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bioRxiv - Cancer Biology 2024Quote: ... Barcoded libraries for each section were generated using the Nextera XT DNA Kit (Illumina Inc., San Diego, CA). After library preparation the barcoded libraries were pooled using bead-based normalization supplied with the Nextera XT kit ...
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bioRxiv - Cancer Biology 2024Quote: ... The sample order was randomized again and concentrated DNA was shipped on dry ice to the University of California, Los Angeles (UCLA) Neurogenomics Core facility (Los Angeles, CA) for analysis using Illumina 450K microarrays (Illumina Inc., San Diego, CA).
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bioRxiv - Cancer Biology 2024Quote: ... Raw bead-level data were minimally processed by the UCLA Neurogenomics Core facility (no normalization or background correction) using BeadStudio software (Illumina Inc., San Diego, CA).
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bioRxiv - Cancer Biology 2024Quote: ... was shipped on dry ice to the UCLA Neurogenomics Core facility (Los Angeles, CA) for analysis using Illumina HT-12 v4 human microarrays (Illumina Inc., San Diego, CA). The order of the sections was randomized prior to shipment to avoid confounding potential technical artifacts with potential biological gradients of gene expression ...
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bioRxiv - Cancer Biology 2024Quote: snRNA-seq raw reads were demultiplexed and basecalled using “bcl2fastq” (Illumina Inc., San Diego, CA). Barcodes were filtered using the “umi_tools” package115 whitelist function ...
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bioRxiv - Cancer Biology 2024Quote: snAmp-seq data were demultiplexed and basecalled using “bcl2fastq” (Illumina Inc., San HDiego, CA). Reads were assessed with FastQC to ensure the quality of sequencing data by verifying high base quality scores ...
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bioRxiv - Cancer Biology 2024Quote: ... Sequencing was performed using a 300 cycle Miseq v2 Nano kit on a MiSeq (Illumina Inc., San Diego, CA).
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bioRxiv - Evolutionary Biology 2024Quote: ... DNA library was prepared using TruSeq DNA PCR-Free Protocol (Illumina, San Diego, CA) at Macrogen Inc ...
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bioRxiv - Developmental Biology 2024Quote: cDNAs were prepared from lysed cells according to SMART-Seq2.0 (Picelli et al., 2014) for low input RNA sequencing and libraries were prepared with Nextera® DNA Library kit (Illumina). Independent biological replicates of each cell type sequenced using Illumina NextSeq500 and obtained ∼20 million 100 bp paired-end reads ...
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bioRxiv - Developmental Biology 2024Quote: Raw sequencing reads were demultiplexed to FASTQ format files using bcl2fastq (Illumina; version 2.20.0). Digital expression matrices were generated from the FASTQ files using Cell Ranger (Zheng et al. ...
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bioRxiv - Developmental Biology 2024Quote: ... Gene expression libraries were multiplexed and sequenced on the Nextseq 500 (Illumina) using a 75-cycle kit and the following read structure ...
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bioRxiv - Cell Biology 2024Quote: ... Gene methylation data from Illumina 450K methylation BeadChip was expressed as β-values normalized to a value between 0 (unmethylated ...
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bioRxiv - Cell Biology 2024Quote: ... The library preparation workflow is depicted below for sequencing on Illumina Hiseq (HiSeq™ 2000 Sequencing System, Illumina, Genewiz/Azenta Life Sciences).
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bioRxiv - Cell Biology 2024Quote: ... The paired-end 42 bp sequencing reads (PE42) generated by Illumina were mapped to the genome using the STAR algorithm - DESeq2 software pipeline described in the Data Explanation document ...
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bioRxiv - Cell Biology 2024Quote: ... and sequenced on the HiSeq4000 platform (Illumina) at the Institute for Genomic Medicine (IGM ...
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bioRxiv - Pathology 2024Quote: ... The cDNA libraries were prepared using a Chromium Single Cell 3’ V3 kit (10X Genomics, USA) according to the manufacturer’s instructions and then sequenced on a NovaSeq6000 (Illumina, USA). Raw sequencing reads were aligned to the mm10 (GENCODE vM23/Ensembl 98 ...
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bioRxiv - Physiology 2024Quote: ... Libraries were sequenced on a HiSeq 2500 (Illumina).
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bioRxiv - Physiology 2024Quote: ... Single read sequencing took place on a NextSeq 2000 System (Illumina), using the corresponding NextSeq 2000 P3 Reagents (50 cycles) ...
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bioRxiv - Plant Biology 2024Quote: ... constructed sequencing libraries using an Illumina Stranded mRNA Prep kit (Illumina, Inc. San Diego, CA, USA), and sequenced all 18 libraries on a NovaSeq 6000 (Illumina ...
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bioRxiv - Neuroscience 2024Quote: ... Sequencing was performed using NSQ 500/550 Hi Output KT v2.5 (150 CYS) (Illumina) to obtain 75bp paired end reads ...
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bioRxiv - Synthetic Biology 2024Quote: ... The prepared libraries were sequenced by a Miseq machine (Illumina). Analysis of the sequencing data was performed as previously described in (Herz et al ...
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bioRxiv - Physiology 2024Quote: ... RNA libraries were prepared using the TruSeq Stranded Total RNA Sample Preparation protocol (Illumina, San Diego, CA) with 250ng of mRNA ...
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bioRxiv - Plant Biology 2024Quote: ... and second strand synthesis buffer (containing dNTPs, RNase H and E. coli polymerase I, Illumina) was added so that the second strand was produced by nick-translation ...
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bioRxiv - Synthetic Biology 2024Quote: Sequencing reads from Illumina NextSeq platforms are first demultiplexed using BCL2fastq software (Illumina). Sequencing libraries were single-end sequenced to cover the DNA Tape from one direction ...
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bioRxiv - Systems Biology 2024Quote: ... according to the Ovation RRBS Methyl-Seq System 1-16 protocol for the first read and the Read 2 primer (Illumina) for the second read ...
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bioRxiv - Cancer Biology 2024Quote: ... RNA-sequencing library preparation was done using the True-Seq Stranded mRNA kit (Illumina) per manufacturer’s protocol ...
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bioRxiv - Cancer Biology 2024Quote: ... DNA from transposed nuclei was then isolated and PCR-amplified using barcoded Nextera primers (Illumina). Library QC was carried out using high sensitivity DNA bioanalyzer assay and Qubit measurement and sequenced using paired-end sequencing (PE50 ...
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bioRxiv - Cancer Biology 2024Quote: ... Nuclei were split in half and treated with 2.5 μl Tn5 Transposase (Illumina) for 30 minutes at 37°C ...
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bioRxiv - Immunology 2024Quote: Fastq files were generated using Casava 1.8 (Illumina), and BWA 37 was employed to align the reads to mm9 ...
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bioRxiv - Immunology 2024Quote: ... cDNA libraries were sequenced with the Illumina Hiseq 2000 sequencer (Illumina HiSeq 2000 v4 Single-Read 50 bp) after pooling according to its expected data volume and effective concentration ...
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bioRxiv - Immunology 2024Quote: ... Tumor-specific structural variants (SVs) were identified using the manta software (https://github.com/Illumina/manta/blob/mater/docs/userGuide/README.md#introduction).
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bioRxiv - Bioengineering 2024Quote: ... FASTQ files were created and demultiplexed using bcl2fastq v2.17.1.14 Conversion Software (Illumina). Deep sequencing was performed by the W.M ...
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bioRxiv - Bioengineering 2024Quote: ... and samples were sequenced with a NovaSeq 6000 system (Illumina). For analysis ...
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bioRxiv - Bioengineering 2024Quote: ... RNA seq libraries were prepped with the TrueSeq® mRNA library prep kit (Illumina) and samples were sequenced with a NovaSeq 6000 system (Illumina) ...
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bioRxiv - Bioengineering 2024Quote: ... Indexed amplicons were then generated with a Nextera XT DNA Library Prep Kit (Illumina) and pooled ...
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bioRxiv - Bioengineering 2024Quote: The compressed paired-end human mRNA-seq data in fastq format over 80 gigabytes from Illumina PE150 ...
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bioRxiv - Cell Biology 2024Quote: ... followed by RNA sequencing using NovaSeq 6000 (Illumina). All samples passed quality control based on the results of FastQC ...
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bioRxiv - Cell Biology 2024Quote: ... Library preparation was performed with UltraTM RNA Library Prep Kit (Illumina) followed by RNA sequencing using NovaSeq 6000 (Illumina) ...
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bioRxiv - Bioengineering 2024Quote: ... and sequenced by Illumina MiSeq (MiSeq Reagent Kit v3 600-cycle) ...
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bioRxiv - Bioengineering 2024Quote: ... All data on GEO as of December of 2022 measured by Illumina EPIC array and Illumina HM450K array are compiled and made available on its public data server (https://recount.bio/data/) ...
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bioRxiv - Bioengineering 2024Quote: ... The PCR amplicons were cleaned up and unique indexes attached to the samples before being run on a MiSeq v2 chip (Illumina), read depth >10000 per sample ...
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bioRxiv - Bioengineering 2024Quote: ... To extract all DNA methylation beta values for the 102 nt BCAT1 promoter measured by Illumina EPIC array ...
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bioRxiv - Bioengineering 2024Quote: ... then the target exon was extracted with B2M exon primers with attached Nextera XT DNA Library Preparation Kit (Illumina, San Diego, Ca, USA) index adapter sequences ...
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bioRxiv - Biochemistry 2024Quote: ... Indexed libraries across ligand and bin conditions were pooled in equimolar ratios and submitted to the NUSeq Core Facility for sequencing on a full flowcell of a NextSeq 500 (Illumina) instrument for paired-end 75 x 75 cycles ...
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bioRxiv - Biochemistry 2024Quote: ... Round 2 primers (Illumina TruSeq Adapters) were added to each reaction to 400 nM ...
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bioRxiv - Animal Behavior and Cognition 2024Quote: ... Clustering of the index-coded samples was performed on a cBot Cluster Generation System using the TruSeq PE Cluster Kit v4-cBot-HS (Illumina), according to the manufacturer’s instructions ...
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bioRxiv - Biochemistry 2024Quote: ... Products of SELEX rounds were sequenced on a MiSeq v3 machine (Illumina) with 150-bp single reads sequencing at the Vincent J ...