Labshake search
Citations for Illumina :
1 - 50 of 10000+ citations since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Microbiology 2024Quote: ... Samples were sent for paired-end sequencing (2×250bp) on the Illumina MiSeq platform (Illumina, San Diego, CA, USA) at the Cornell University Biotechnology Resource Center (Ithaca ...
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bioRxiv - Microbiology 2024Quote: ... Initial read processing involved contaminant scanning (e.g., Illumina adapter sequences) and quality-based cleaning using FastQC [49] ...
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bioRxiv - Microbiology 2024Quote: ... SP flow cell sequencing run using the NovaSeq 6000 (Illumina, San Diego, CA, USA). The PhiX Control v3 Library (Illumina ...
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bioRxiv - Microbiology 2024Quote: ... Libraries were pooled and 2×150 bp reads were generated using the NovaSeq 6000 platform (Illumina; Cat. No. 20012850).
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bioRxiv - Microbiology 2024Quote: ... TruSeq Stranded mRNA Library Prep Kit from Illumina was applied to prepare the cDNA libraries ...
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bioRxiv - Microbiology 2024Quote: ... Barcodes were then introduced with a second round PCR using a legacy Nextera kit of adaptors (Illumina, compatible with FC-121-1031 ...
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bioRxiv - Microbiology 2024Quote: ... Libraries were sequenced on the NovaSeq 6000 System (Illumina) on two SP Flowcells ...
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bioRxiv - Microbiology 2024Quote: ... and Nextera flex libraries were prepared and subjected to HiSeq4000 150PE (Illumina) sequencing at the Genomic Technologies Facility in Lausanne ...
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bioRxiv - Immunology 2024Quote: ... Corresponding raw reads (Illumina fastq files) were downloaded from NCBI SRA when available ...
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bioRxiv - Immunology 2024Quote: ... and mRNA sequencing libraries were prepared by the OHSU Massively Parallel Sequencing Shared Resource (MPSSR) using the TruSeq Stranded Poly(A)+ Library Prep Kit (Illumina). Barcoded libraries were pooled ...
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bioRxiv - Immunology 2024Quote: ... transposition was performed using the kit (Illumina, #FC-121-1030). DNA was then amplified using NEBNext High Fidelity 2X PCR Master Mix (New England Biolabs ...
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bioRxiv - Immunology 2024Quote: ... the DNA library was prepared using the Nextera XT Library Prep Kit (Illumina, #FC-131-1024), following the manufacturer’s protocol.
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bioRxiv - Microbiology 2024Quote: ... The mitochondrial genome was assembled from Illumina reads using GetOrganelle (v1.7.5.3 ...
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bioRxiv - Cancer Biology 2024Quote: ... and equimolar libraries were pooled and subjected to 75-bp paired-end sequencing on a NextSeq 550 machine (Illumina). Raw reads were demultiplexed and FASTQ files were generated ...
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bioRxiv - Cancer Biology 2024Quote: ... Raw reads were demultiplexed and FASTQ files were generated using Bcl2fastq v2.20.0.422 (Illumina). The reads were trimmed for low quality/adapter sequence using Trimmomatic (RRID:SCR_011848 ...
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bioRxiv - Cancer Biology 2024Quote: ... Equimolar libraries from each sample were pooled and subjected to 75-bp paired-end sequencing on a NextSeq 550 machine (Illumina). Raw reads were demultiplexed and FASTQ files were generated using Bcl2fastq v2.20.0.422 (Illumina) ...
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bioRxiv - Cancer Biology 2024Quote: ... followed by tagmentation performed using Nextera Tn5 transposase (Illumina Nextera ATAC seq kit, 20034197). Libraries were prepared using dual-end indexing using NEBNext Ultra II DNA Library Prep Kit (New England Biolabs ...
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bioRxiv - Cancer Biology 2024Quote: ... followed by rRNA removal using Ribo-Zero (Illumina) according to manufacturers’ recommendations ...
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bioRxiv - Cancer Biology 2024Quote: Whole exome sequencing (WES) was performed using the Nextera Exome Enrichment Kit (Illumina). 2 x 100 nucleotide paired end sequences were input into Illumina HisSeq2000 with an output of 100 nucleotide paired end reads in FASTQ format ...
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bioRxiv - Cancer Biology 2024Quote: ... the sequencing was performed under the setting of single read 1×51 bp to generate ∼30 million reads per sample on HiSeq 1000 sequencer (Illumina).
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bioRxiv - Cancer Biology 2024Quote: ... paired-end 150bp sequencing was performed on the NovaSeq (Illumina) platform ...
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bioRxiv - Cancer Biology 2024Quote: Paired-end 150bp sequencing was performed on the MiSeq (Illumina) platform.
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bioRxiv - Cancer Biology 2024Quote: ... Libraries were pooled and sequenced in (2 x 100bp) on the NovaSeq-6000 (Illumina). Gene and ERV expression was quantified as described (11,31 ...
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bioRxiv - Cancer Biology 2024Quote: ... Sequencing of the libraries was performed on the NovaSeq-6000 at Gustave Roussy (Illumina; 50 bp paired-end reads). ATAC-seq data were processed essentially as described (15 ...
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bioRxiv - Cancer Biology 2024Quote: ... RNA-seq libraries were sequenced on Illumina NextSeq 550 (Illumina, San Diego, CA, USA) with single 76 bp reads ...
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bioRxiv - Cancer Biology 2024Quote: ... Paired-end sequencing was carried out on a MiSeq instrument (Illumina, Inc.). Analysis was performed with the DNA Amplicon App v2.1.1 on BaseSpace Sequence Hub Professional and Variant Interpreter v2.11.1.1 (Illumina) ...
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bioRxiv - Cancer Biology 2024Quote: ... RNF43 exome sequencing was performed using a RNF43 Custom Panel (Illumina). Paired-end sequencing was carried out on a MiSeq instrument (Illumina ...
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bioRxiv - Cancer Biology 2024Quote: ... Analysis was performed with the DNA Amplicon App v2.1.1 on BaseSpace Sequence Hub Professional and Variant Interpreter v2.11.1.1 (Illumina). Single nucleotide polymorphisms and INDELS with a quality score of > 90 ...
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bioRxiv - Cancer Biology 2024Quote: ... Libraries were pooled in equal quantities and sequenced using Illumina HiSeq 2500 (Illumina) to produce ∼30 million paired-end reads (50x50 bases ...
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bioRxiv - Cancer Biology 2024Quote: ... then resuspended in 1X Tagment DNA buffer (Illumina) with 2.5 μl Tagment DNA Enzyme (Illumina ...
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bioRxiv - Cancer Biology 2024Quote: ... 2 µg of total RNA were depleted for ribosomal RNA using a Ribo-Zero-rRNA removal kit (Illumina), followed by random primed cDNA synthesis ...
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bioRxiv - Cancer Biology 2024Quote: ... RNA-seq libraries for the cell lines and the CLL RNA were prepared using the TruSeq-stranded-total RNA SamplePrep kit (Illumina) according to the manufacturer’s protocol ...
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bioRxiv - Cancer Biology 2024Quote: ... Sequencing libraries were run at the sequencing core unit of the Max-Planck Institute for Molecular Genetics on a HiSeq2500 (Illumina) using 50 bp paired-end reads.
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bioRxiv - Cancer Biology 2024Quote: ... Libraries were pooled and single-end sequenced (1×75 bp) on the Illumina NextSeq 500 using the High-Output V2 Kit (Illumina). Read data were processed in BaseSpace ...
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bioRxiv - Cancer Biology 2024Quote: ... mRNA was isolated from 1.2 μg of total RNA and used to generate dual-indexed cDNA libraries with the Illumina stranded mRNA ligation kit (Illumina) and UD Indexes Set A (Illumina) ...
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bioRxiv - Cancer Biology 2024Quote: ... An equimolar pool was prepared with the thirty-two libraries for SE75 sequencing on a NextSeq550 (Illumina).
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bioRxiv - Cancer Biology 2024Quote: ... with 2.5 μl Tagment DNA Enzyme (Illumina) and incubated at 37 °C for 30 min ...
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bioRxiv - Cancer Biology 2024Quote: ... ChIP-seq libraries were prepared using NEBNext DNA Ultra II library prep kit and sequenced by Illumina MiSeq.
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bioRxiv - Cancer Biology 2024Quote: ... An equimolar pool was prepared with the thirty-two libraries for SE75 sequencing on a NextSeq550 (Illumina). Sequencing output was above 1,015 million 75-nt long single-end reads and a minimum of 27.7 million reads were obtained for all samples.
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bioRxiv - Cancer Biology 2024Quote: ... PCR products were sequenced on a HiSeq 4000 instrument (Illumina) at 50bp reads to a depth of 30M reads per sample.
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bioRxiv - Cancer Biology 2024Quote: ... and UD Indexes Set A (Illumina). Ten cycles of PCR amplification were applied to all libraries.
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bioRxiv - Cancer Biology 2024Quote: Genomic DNA was used for copy number analysis performed as described previously42 using a HiSeq 4000 (Illumina) sequencer in a single-read 50-cycle run mode ...
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bioRxiv - Cancer Biology 2024Quote: ... P-BOs and NP-BOs and 30X target depth for matched normal (blood) was performed by Illumina, the Sanger Institute ...
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bioRxiv - Cancer Biology 2024Quote: ... 2.5 μL Tn5 transposase (Illumina 15027865), and 5 μL water ...
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bioRxiv - Cancer Biology 2024Quote: ... Nuclei were resuspended in 50 μL tagmentation reaction containing 25 μL 2X tagmentation buffer (Illumina 15027866), 16.5 μL PBS ...
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bioRxiv - Cancer Biology 2024Quote: ... Libraries were sequenced as paired-end reads on a NextSeq instrument (Illumina).
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bioRxiv - Cancer Biology 2024Quote: ... Libraries were amplified and sequencing was performed in thirty-five base pair paired-end reads on a NextSeq instrument (Illumina). For single cell ATAC-seq ...
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bioRxiv - Cell Biology 2024Quote: ... and MMP14 were determined by RNA sequencing (Illumina HiSeq) in both cancerous and normal tissue samples ...
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bioRxiv - Cancer Biology 2024Quote: ... Library preparation and sequencing was performed at the QUT Central Analytical Research Facility (CARF) using the Illumina TruSeq Stranded mRNA Sample Prep Kit (strand-specific, polyA enriched, Illumina, San Diego, USA) with an input of 1 µg total RNA (RIN>9) ...
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bioRxiv - Cancer Biology 2024Quote: ... and >95% of all exons of that gene was represented on the sequencing platform used to generate the data (GENIE has 104 different platforms, mostly Illumina-based but differing in genes being captured) ...