Labshake search
Citations for PacBio :
451 - 500 of 1293 citations since 2020
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Immunology 2023Quote: ... Sorted cells were sequenced by PacBio long-read sequencing.
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bioRxiv - Immunology 2023Quote: ... The pooled library was bound to polymerase using the Sequel Binding Kit 3.0 (PacBio) and loaded onto PacBio Sequel using Sequel Sequencing Kit 3.0 ...
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bioRxiv - Microbiology 2023Quote: ... For SRA runs with long reads available (i.e., PacBio or MinION), Unicycler v0.5.047 was used to assemble the genome ...
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bioRxiv - Evolutionary Biology 2023Quote: ... cortezi generated by PacBio HiFi technology (see above) ...
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bioRxiv - Genomics 2023Quote: ... and loaded onto PacBio Sequel II (PacBio) on 8M SMRT cells (SRR25687008).
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bioRxiv - Microbiology 2023Quote: Genomic sequence data were generated using a Pacific Biosciences (PacBio) RS II sequencer at the University of Minnesota Genomics Center with one PacBio single molecule real time (SMRT ...
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bioRxiv - Cancer Biology 2023Quote: ... or the SRE XS kit (Circulomics SS-100-121-01; now PacBio SKU 102-208-200) when sample availability or concentration was limiting.
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bioRxiv - Cancer Biology 2023Quote: ... All samples were depleted of short DNA fragments (less than 10kb long) with the short read eliminator (SRE) kit (Circulomics, SS-100-101-01; now PacBio 102-208-300) or the SRE XS kit (Circulomics SS-100-121-01 ...
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bioRxiv - Cancer Biology 2023Quote: Tumour genomic DNA was extracted from fresh-frozen tissue with the Nanobind tissue kit (Circulomics NB-900-701-01, now PacBio SKU 102-302-100) and Germline DNA from blood with the Nanobind CBB kit (Circulomics NB-900-001-01 ...
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bioRxiv - Cancer Biology 2023Quote: ... and Germline DNA from blood with the Nanobind CBB kit (Circulomics NB-900-001-01, now PacBio SKU 102-301-900). After extraction ...
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bioRxiv - Bioengineering 2023Quote: ... 2 weeks later and subjected to large deletions detection (PCR and PacBio sequencing). Single cells were isolated from bulk edited cells into 96-well plates 2 weeks after electroporation and genotyped 2 weeks after isolation ...
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bioRxiv - Genomics 2023Quote: ... The size-selected libraries were prepared for loading following the instructions generated by the SMRT Link software (PacBio, version 10) and the ‘HiFi Reads’ application ...
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bioRxiv - Genomics 2023Quote: Circular consensus sequences from PacBio reads were called using pbccs v(6.0.0 ...
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bioRxiv - Genomics 2023Quote: ... on the Sequel® II Sequencer (PacBio).
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bioRxiv - Genomics 2023Quote: ... The Sequel® II Binding Kit 2.2 (PacBio, USA) was used to prepare the libraries for loading ...
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bioRxiv - Genomics 2023Quote: ... All libraries ran on SMRT™ Cells 8 M (PacBio) using the Sequel® II Sequencing Kit 2.0 (PacBio ...
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bioRxiv - Genomics 2023Quote: ... using the Sequel® II DNA Internal Control Complex 1.0 (PacBio). All libraries ran on SMRT™ Cells 8 M (PacBio ...
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bioRxiv - Genomics 2023Quote: Whole genome sequencing was conducted by PacBio Sequel platform ...
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bioRxiv - Genomics 2023Quote: Sequencing data were obtained using two complementary long-read sequencing technologies for the assembly of hTERT RPE-1 cells: Pacific Biosciences (PacBio) High-Fidelity (HiFi ...
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bioRxiv - Genomics 2023Quote: ... and fraction sized 15-20 kb as determined by Femto Pulse were sequenced on the Sequel IIe platform with SMRT Cells 8M (PacBio 101-389-001) using the chemistry 2.0 with 2-hour pre-extension ...
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bioRxiv - Genomics 2023Quote: HMW DNA from 1.5 x 106 cells was used to generate PacBio HiFi libraries with the SMRTbell express template prep kit 2.0 (PacBio 100-938-900). Size selection was performed with Megaruptor 2 (Diagenode ...
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bioRxiv - Genomics 2023Quote: ... using the Sequel® II Sequencing Kit 2.0 (PacBio) on the Sequel® II Sequencer (PacBio).
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bioRxiv - Genomics 2023Quote: ... and the DNA library was prepared with the SMRTbell Express Template Prep Kit 2.0 (PacBio). The prepared library was sequenced by Revio (PacBio) ...
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bioRxiv - Genomics 2023Quote: ... The prepared library was sequenced by Revio (PacBio). The library preparation and sequencing were performed at Macrogen Japan Inc ...
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bioRxiv - Molecular Biology 2023Quote: ... trimmed reads were mapped against the human reference genome GRCh38.p14 (GCA_000001405.29, February 2022) using Minimap2 (Version 2.24) (Li 2018) (PacBio/Oxford Nanopore read to reference mapping ...
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bioRxiv - Genomics 2023Quote: ... They performed sequencing (on the five pooled libraries) on a single SMRT 8M cell with the PacBio Sequel II (PacBio, Menlo Park, CA) and a 30h movie ...
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bioRxiv - Genomics 2023Quote: ... They then bound the library to polymerase using the Sequel II Binding Kit 2.0 (PacBio) and loaded onto PacBio Sequel II (PacBio ...
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bioRxiv - Genomics 2023Quote: ... They constructed the PacBio SMRTbell library (∼20kb) for PacBio Sequel using SMRTbell Express Template Prep Kit V 2.0 (PacBio, Menlo Park, CA, USA) using the manufacturer recommended protocol ...
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A randomized multiplex CRISPRi-Seq approach for the identification of critical combinations of genesbioRxiv - Genetics 2023Quote: ... Samples were prepared for sequencing on a Sequel instrument (PacBio) using the Sequencing Primer v4 and the Sequel Binding Kit 3.0 ...
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bioRxiv - Immunology 2023Quote: ... and the correspondence of variant and N26 barcode was obtained by PacBio sequencing on Sequel ll platform in Peking University throughput sequencing center (HTSC) ...
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bioRxiv - Microbiology 2023Quote: ... the sequencing library was prepared from PacBio high fidelity (HiFi ...
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bioRxiv - Genomics 2023Quote: ... input amounts of 500 ng provide sufficient library yield for approximately one full (non-multiplexed) Pacific Biosciences (PacBio) Sequel II instrument sequencing run ...
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bioRxiv - Genomics 2023Quote: De novo variant calling was done using deepvariant (Poplin et al. [2018]; v1.1.0; model_type=PACBIO) using the HIFI host reads aligned to GRCm39 with pbmm2 (v1.4.0 ...
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bioRxiv - Immunology 2023Quote: ... Tools from PacBio & Bioconda were used to process these data (https://github.com/PacificBiosciences/pbbioconda) ...
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bioRxiv - Evolutionary Biology 2023Quote: ... The PacBio SMRTbell library (~20kbp mean insert length) for PacBio Sequel was constructed using SMRTbell Express Template Prep Kit 2.0 (PacBio, Menlo Park, CA, USA) using the manufacturer recommended protocol ...
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bioRxiv - Evolutionary Biology 2023Quote: ... The library was bound to polymerase using the Sequel II Binding Kit 2.0 (PacBio) and loaded onto PacBio Sequel II) ...
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bioRxiv - Genomics 2023Quote: ... The library preparation procedure is described in the protocol “Preparing HiFi Libraries from Low DNA Input Using SMRTbell Express Template Prep Kit 2.0” from PacBio. The SMRTbell library sizes and profiles were evaluated using the Agilent DNA 12000 kit on the Bioanalyzer system ...
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bioRxiv - Microbiology 2023Quote: ... 2 µg of DNA were used for Pacific Biosciences (PacBio) sequencing (Centre For Genomic Research ...
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bioRxiv - Developmental Biology 2023Quote: ... additionally sequenced by Pacbio underwent the same pipeline as PCW4 E3 ...
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bioRxiv - Genomics 2023Quote: ... we generated high-quality transcripts from PacBio long RNA reads using isoseq3 v3.4.0 [15] and aligned them to the QX1410 genome using minimap2 [38] ...
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bioRxiv - Cancer Biology 2023Quote: ... we require that the call is present in all pairwise comparisons where it should be present with the correct filtering status (e. g., if a given L1 element is present only in the maternal genome in PacBio calls ...
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bioRxiv - Plant Biology 2023Quote: Full-length transcripts (PacBio sequencing) and previously generated PE mRNA-seq reads (Brilhaus et al. ...
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bioRxiv - Genomics 2023Quote: ... Library construction for HIFI protocol was done using SMRTbell Express Template Prep Kit 2.0 (PacBio), followed by another round of AMPure PB Beads Purification and Bluepippin size selection (< 8kbp) ...
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bioRxiv - Genomics 2023Quote: ... Samples were sequenced with Sequel II Sequencing Kit 2.0 on PacBio Sequel II (PacBio).
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bioRxiv - Genomics 2023Quote: ... DNA samples were purified and concentrated using AMPure PB beads (PacBio, Menlo Park, USA) to remove small fragments and impurities prior to library preparation ...
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bioRxiv - Microbiology 2023Quote: High-quality HiFi reads were extracted from PacBio sequencing data requiring a minimum of 3 full passes in CCS command (v6.0.0 ...
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bioRxiv - Microbiology 2023Quote: ... The assemblies were produced using third generation long reads (PacBio Sequel / PacBio Hifi, BioNano®) and Hi-C ...
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bioRxiv - Microbiology 2023Quote: The assembly of the mitochondrial genome sequence was done with ALADIN (https://github.com/GDKO/aladin) using the mitochondrion mode from PacBio HiFi reads ...
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bioRxiv - Microbiology 2023Quote: ... Sequencing libraries were prepared with the Illumina Nextera DNA flex and Pacific Bioscience (PacBio) SMRTbell express template prep kit 2.0 ...
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bioRxiv - Molecular Biology 2023Quote: ... The RNA quality was assessed with the Agilent 2100 Bioanalyzer (for PacBio sequencing) or Agilent 4150 TapeStation System (for MinION sequencing ...