Labshake search
Citations for PacBio :
301 - 350 of 1293 citations since 2020
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Genomics 2024Quote: ... The SMRTbell® prep kit 3.0 from Pacbio was used to prepare the sequencing libraries ...
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bioRxiv - Genomics 2024Quote: ... Sequencing was performed using SMRT link software (10.2.0.133434) on a Sequel IIe machine (PacBio™). The “Run Design Application’’ was set to CCS (circular consensus sequencing ...
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bioRxiv - Genomics 2024Quote: ... Fragments less than 5 kb were selectively removed using the AMPure PB beads size selection kit (Pacbio, Menlo Park, CA, USA). The SMRTbell® prep kit 3.0 from Pacbio was used to prepare the sequencing libraries ...
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bioRxiv - Genomics 2024Quote: Read mapping to our genome assembly was performed using Minimap2 (PacBio HiFi) (Li 2018 ...
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bioRxiv - Genomics 2024Quote: ... and Revio polymerase kit v1 (PacBio, 102-817-600) with 2-hour pre-extension and 24-hour movies.
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bioRxiv - Genomics 2024Quote: ... using Sequel II sequencing chemistry 3.2 (PacBio,102-333-300) with 2-hour pre-extension and 30-hour movies ...
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bioRxiv - Microbiology 2024Quote: ... Then 1X clean-up with SMRTBell beads (PacBio) was performed ...
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bioRxiv - Microbiology 2024Quote: ... All recovered material was used as an input for library preparation using SMRTBell 3.0 chemistry (PacBio) and following the manufacturer’s instructions ...
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bioRxiv - Genomics 2024Quote: ... DNA was then isolated from the washed blood pellet using the Circulomics Nanobind CBB kit and protocol according to the manufacturer’s recommendations (Circulomics, now PacBio company). High molecular weight DNA was eluted from the Nanodisk with 150µl Tris-cl buffer ...
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bioRxiv - Plant Biology 2024Quote: ... CLR (continuous long reads) assemblies were generated using FALCON Unzip from PacBio SMRT Tools 9.0 Suite 15 and CCS (circular consensus sequencing ...
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bioRxiv - Genomics 2024Quote: ... to reduce potential PCR biases of the amplification polymerases A/B supplied by PacBio, we prepared two further libraries using KOD Xtreme™ Hot Start DNA Polymerase C (Merck) ...
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bioRxiv - Genomics 2024Quote: ... Fragmented DNA in the extracted DNA was removed using the Short Read Eliminator Kit (PacBio, CA, US). The sequencing library for long-read sequencing was prepared using the Ligation Sequencing Kit (SQK-LSK109 ...
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bioRxiv - Genomics 2024Quote: ... A SMRTbell library was constructed for both samples using the SMRTbell® prep kit 3.0 (PacBio Cat. No. 102-141-700), following the manufacturer’s instructions ...
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bioRxiv - Microbiology 2024Quote: ... The 16S rRNA sequences recovered from PacBio raw reads dataset are available in doi:10.6084/m9.figshare.25577322.
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bioRxiv - Microbiology 2024Quote: ... 45 isolates were subjected to long read sequencing on the Pacific Biosciences (PacBio, Menlo Park, California, USA) Sequel IIe platform at the Leiden Genome Technology Center ...
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bioRxiv - Microbiology 2024Quote: ... Size-selection was performed on library sub-pools using either diluted AMPure PBbeads (PacBio, 35% beads, 3.1x v/v ratio) or Blue Pippin (Sage Science ...
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bioRxiv - Plant Biology 2024Quote: ... SMRT sequencing libraries were prepared with the SMRTbell Express Template Prep Kit 2.0 (PacBio, Menlo Park, CA, USA) and sequenced on a PacBio Sequel II system ...
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bioRxiv - Plant Biology 2024Quote: ... Qualified libraries were sequenced using the BGI Sequel II system (PacBio platform) in HiFi mode.
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bioRxiv - Evolutionary Biology 2024Quote: ... A PacBio SMRTbell library was prepared using the SMRTbell Template Prep Kit 2.0 and Sequel II Binding 2.2 (PacBio, CA, USA), and loaded onto the sequencer by diffusion ...
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bioRxiv - Evolutionary Biology 2024Quote: ... The sequencing was conducted on a Sequel II platform (PacBio, CA, USA), employing a Sequel II Sequencing Kit 2.0 and a SMRT Cell 8M Tray ...
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bioRxiv - Immunology 2024Quote: ... and the link of N26 barcode and NTD variant was obtained by PacBio sequencing ...
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bioRxiv - Immunology 2024Quote: ... the barcode sequences detected in both the antibody-screened and reference library were aligned to the barcode-variant dictionary generated from PacBio sequencing data of the BA.5 DMS library using dms_variants (v0.8.9) ...
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bioRxiv - Genetics 2024Quote: ... Sequencing was performed on a PacBio Sequel II/IIe system using SMRT Cell 8M (Catalog number 101-389-001, PacBio, Menlo Park, CA, USA) on the HiFi sequencing run.
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bioRxiv - Genomics 2024Quote: ... reference 10x barcodes provided by PacBio were used (https://downloads.pacbcloud.com/public/dataset/MAS-Seq/REF-10x_barcodes/3M-february-2018-REVERSE-COMPLEMENTED.txt.gz) ...
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bioRxiv - Genomics 2024Quote: The scISO-seq reads were processed using the methods and workflow provided by PacBio (https://github.com/PacificBiosciences/pbbioconda ...
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bioRxiv - Microbiology 2024Quote: ... Sheared DNA was converted to a library with the SMRTBell Express Template Prep kit 3.0 from PacBio. The library was sequenced on a shared SMRTcell 8M on a PacBio Sequel IIe using the CCS sequencing mode and a 30-hour movie time ...
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bioRxiv - Microbiology 2024Quote: ... CCS analysis was done in an instrument with SMRTLink V11.0 (PacBio) using the following parameters ...
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bioRxiv - Genomics 2024Quote: ... Sequencing results were analyzed by SMRTtools (v10.1) from PacBio was used to convert bam files to fastq files ...
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bioRxiv - Synthetic Biology 2024Quote: ... Sequencing data (Sample GSM3290315, MG1655_rich_PacBio RS II ...
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bioRxiv - Systems Biology 2024Quote: ... A HiFi sequencing library for de novo genome assembly was prepared using the SMRTbell library prep kit (PacBio, Menlo Park, CA, USA), according to the manufacturer’s protocol ...
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bioRxiv - Synthetic Biology 2024Quote: DNA samples for sequencing are extracted either using the Nanobind CBB kit (PacBio, USA)] ...
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bioRxiv - Microbiology 2024Quote: ... Sequencing libraries were prepared following the protocol “Procedure & Checklist – Preparing HiFi SMRTbell Libraries from Ultra-Low DNA Input” (PacBio, Menlo Park, CA) followed by inspection with a FEMTOpulse ...
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bioRxiv - Immunology 2024Quote: ... The assemblies were produced using third generation long reads (PacBio Sequel / PacBio Hifi, BioNano®) and Hi-C ...
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bioRxiv - Microbiology 2024Quote: ... were then aligned to the target amplicon (https://github.com/dms-vep/Flu_H5_American-Wigeon_South-Carolina_2021 -H5N1_DMS/blob/main/data/PacBio_amplicon.gb) using alignparse75 ...
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bioRxiv - Plant Biology 2024Quote: ... method and used for the construction of a SMRTbell library using the SMRTbell Express Template Prep Kit 2.0 (PacBio). The library was sequenced with the circular consensus sequencing (CCS ...
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bioRxiv - Plant Biology 2024Quote: The haplotype-resolved contigs of ‘Tanzania’ were assembled from PacBio HiFi and Hi-C sequencing data using hifiasm (v0.19.5-r587 ...
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bioRxiv - Genomics 2024Quote: ... ∼50 μL per sample was recovered and barcoded using the SMRTbell® Express Template Prep Kit 2.0(Pacbio) with 5 μL of barcoded adapter from the Barcoded overhang adapter kit 8A/B for Sequel II sequenced samples or the SMRTbell® prep kit 3.0 with the SMRTbell adapter index plate 96A ...
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bioRxiv - Genomics 2024Quote: Post-CATCH samples were purified with 0.5x volume of Ampure PB beads and eluted in 52 μL of elution buffer (PacBio 101-633-500). 1 μL was used to quantify sample concentration using a Qubit dsDNA HS Assay according to the manufacturer’s protocol ...
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bioRxiv - Evolutionary Biology 2024Quote: ... About 6 µg of DNA was sheared using a 26G blunt end needle (PacBio protocol PN 101-181-000 Version 05) to ∼40 kb fragments ...
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bioRxiv - Molecular Biology 2024Quote: High molecule weight DNA was extracted from patient’s HSPC with the Nanobind CBB kit (PacBio, catalog no. 102-301-900) according to manufacturer’s instructions ...
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bioRxiv - Molecular Biology 2024Quote: ... DNA was size selected using Short Read Eliminator XS kit (PacBio, catalog no. 102-208- 200) and quantified using the Qubit fluorometer (Thermo Fisher Scientific) ...
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bioRxiv - Immunology 2024Quote: The V1 sequence analysis of AMP trial breakthrough viruses40,42 (Figure 6D) included single- genome V1 sequences derived by PacBio UMI Env sequencing Env sequencing from42 made publicly available at https://atlas.scharp.org/cpas/project/HVTN%20Public%20Data/HVTN%20704%20HPTN%20085%20and%20HVTN%20703%20HPTN%20081%20AMP/begin.view.
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bioRxiv - Immunology 2024Quote: The V1 sequence analysis of CAPRISA 00235 participants with known bNAb-inducer status54–56 (Table S9, Figs 5D and E) included V1 sequences derived by PacBio UMI Env sequencing using a method modified from37 to generate products with single PCR ...
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bioRxiv - Genomics 2024Quote: ... the DNA was used to generate PacBio HiFi libraries via the SMRTbell prep kit 3.0 (PacBio, 102-182-700). Size selection was performed either with diluted AMPure PB beads per the protocol ...
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bioRxiv - Genomics 2024Quote: ... Libraries were sequenced either on the Sequel II platform on SMRT Cells 8M (PacBio, 101-389-001) using Sequel II sequencing chemistry 3.2 (PacBio,102-333-300 ...
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bioRxiv - Genomics 2024Quote: ... or on the Revio platform on Revio SMRT Cells (PacBio, 102-202-200) and Revio polymerase kit v1 (PacBio ...
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bioRxiv - Plant Biology 2024Quote: ... and subjected to long- read sequencing on the Sequel IIe (PacBio) using the Binding kit 2.2 (PacBio) ...
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bioRxiv - Plant Biology 2024Quote: ... using the Binding kit 2.2 (PacBio). Using SMRT Link (v10.1.0.119528 ...
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bioRxiv - Plant Biology 2024Quote: ... Libraries for PacBio sequencing were generated using the SMRTbell Express Template Prep Kit 2.0 (PacBio) and subjected to long- read sequencing on the Sequel IIe (PacBio ...
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bioRxiv - Plant Biology 2024Quote: ... Using SMRT Link (v10.1.0.119528) (PacBio), adapter sequences were removed from the sequenced reads ...