Labshake search
Citations for PacBio :
551 - 600 of 1293 citations since 2020
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Evolutionary Biology 2023Quote: ... Using SMRTBell template Prep Kit 1.0 and SMRTbell Barcoded Adaptater kit 8A or 8B kits (PacBio), samples (1 µg ...
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bioRxiv - Plant Biology 2023Quote: ... Libraries were prepared and multiplexed with the PacBio SMRTbell® Express Template Prep Kit 2.0 (PacBio, Menlo Park, CA, USA) according to the published protocol (19) ...
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bioRxiv - Genomics 2023Quote: ... and loaded onto PacBio Sequel using the MagBead Kit V2 (PacBio). Sequencing was performed on the PacBio Sequel SMRT cell ...
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bioRxiv - Genomics 2023Quote: ... The pooled library was bound to polymerase using the Sequel Binding Kit 2.0 (PacBio) and loaded onto PacBio Sequel using the MagBead Kit V2 (PacBio) ...
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bioRxiv - Genomics 2023Quote: ... The PacBio SMRTbell library (∼20kb) for PacBio Sequel was constructed using SMRTbell Template Prep Kit 1.0 (PacBio, Menlo Park, CA, USA) using the manufacturer recommended protocol ...
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bioRxiv - Cell Biology 2023Quote: ... Minimap2 was used to annotate and align the output from PacBio sequencing to these reference sequences using default trimming and mismatch calling parameters.
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bioRxiv - Cell Biology 2023Quote: ... Purified DNA was subjected to long-read sequencing (PacBio) and post-sequencing .ccs files for each sample were obtained and assembled for comparison to reference sequences ...
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bioRxiv - Genomics 2023Quote: DBB: SRX19214161 (PacBio), ERX525931 (Illumina)
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bioRxiv - Genomics 2023Quote: QBL: SRX19214164 (PacBio), ERX525979 (Illumina)
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bioRxiv - Genomics 2023Quote: ... we instructed the NextPolish pipeline to use bwa for the short read mapping and minimap2 in the mode designed for Pacbio CCS genomic reads for the HiFi read mapping by modifying the configuration file (the lgs_option section was removed as the raw Pacbio subreads were not being used ...
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bioRxiv - Genetics 2023Quote: ... UW then prepared Iso-seq libraries from this cDNA using a Iso-Seq Express SMRTbell library prep kit (PacBio #100-938-900). The resulting iso-seq libraries were then sequenced by UW on a PacBio Sequel II system using an 8M SMRT cell (v2.1 chemistry) ...
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bioRxiv - Genomics 2023Quote: The high-quality transcripts generated from PacBio IsoSeq data were used to identify putative target sequences ...
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bioRxiv - Genomics 2023Quote: ... a SMRTbell DNA library was constructed according to the Pacbio HiFi SMRTbell protocol using SMRTbell Express Template Prep Kit 3.0 (Pacbio, 102-182-700). After BluePippin size selection (Sage Science ...
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bioRxiv - Genomics 2023Quote: ... and sequenced on PacBio Sequel II system (PacBio, USA).
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bioRxiv - Genomics 2023Quote: ... and sequenced on a PacBio Sequel II platform with Circular consensus sequence (CCS) mode (PacBio, USA). For Hi-C sequencing ...
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bioRxiv - Genomics 2023Quote: ... The sheared gDNA was concentrated using 1.8X of AMPure PB beads (PacBio,Cat. #100-265-900) for the removal of single-strand overhangs at 37°C for 15 minutes ...
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bioRxiv - Genetics 2023Quote: ... total RNA was converted into cDNA using a Iso-Seq Express cDNA generation kit (PacBio #101-737-500). UW then prepared Iso-seq libraries from this cDNA using a Iso-Seq Express SMRTbell library prep kit (PacBio #100-938-900) ...
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bioRxiv - Genomics 2023Quote: ... per sample using either Sequel II Sequencing Chemistry 1.0 (PacBio, 101-717-200) or 2.0 (PacBio ...
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bioRxiv - Genomics 2023Quote: ... Genomic DNA was prepared using the SMRTbell Express Template Prep Kit (PacBio, Menlo Park, CA, USA). Long-read sequence data were obtained using a Sequel IIe system (PacBio) ...
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bioRxiv - Genomics 2023Quote: ... Libraries were sequenced on the Sequel II platform with seven or eight SMRT Cells 8M (PacBio, 101-389-001) per sample using either Sequel II Sequencing Chemistry 1.0 (PacBio ...
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bioRxiv - Genomics 2023Quote: ... and SMRTbell Enzyme Clean Up kits (PacBio, 101-746-400 and 101-932-600). Size selection was performed with SageELF (Sage Science ...
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bioRxiv - Genomics 2023Quote: ... or 2.0 (PacBio, 101-820-200), both with 2-hour pre-extension and 30-hour movies ...
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bioRxiv - Genomics 2023Quote: ... Long-read sequence data were obtained using a Sequel IIe system (PacBio). All HiFi reads were assembled using Hifiasm version 0.16.1 (Cheng et al ...
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bioRxiv - Genomics 2023Quote: ... SMRTbell template libraries were prepared using a Sequel Binding Kit 3.0 (PacBio, Menlo Park, CA, USA), and sequenced on a Sequel instrument using a v3 or v4 sequencing primer ...
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bioRxiv - Genomics 2023Quote: ... Sheared DNA was treated with exonuclease to remove single stranded ends and DNA damage repair mix followed by end repair and ligation of barcoded blunt adapters using SMRTbell Template Prep Kit 2.0 (PacBio, Menlo Park, CA, USA). Libraries were purified with AMPure PB beads (Beckman Coulter ...
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bioRxiv - Genomics 2023Quote: Genome assembly was performed using the PacBio SMRT Link software (PacBio, Menlo Park, CA, USA). Briefly ...
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bioRxiv - Plant Biology 2023Quote: ... The resulting contigs were then corrected with PacBio long reads using the Arrow program in the SMRT-link-5.1 package (PacBio). Illumina paired-end genome sequencing reads were processed with Trimmomatic (v0.36 ...
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bioRxiv - Genomics 2023Quote: ... or Circulomics Nanobind Tissue kit (Pacbio 102-302-100). The linked read library was prepared using the Chromium Genome Reagent Kit v2 following the protocol provided by 10x Genomics ...
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bioRxiv - Evolutionary Biology 2023Quote: ... and was sequenced on the Sequel II platform (PacBio) with one SMRT cell.
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bioRxiv - Evolutionary Biology 2023Quote: ... and sequenced on the Sequel platform with six SMRT cells (PacBio). For S ...
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bioRxiv - Evolutionary Biology 2023Quote: ... The library was prepared using the SMRTbell express Kit (PacBio, Menlo Park, CA, USA), and sequenced on the Sequel platform with six SMRT cells (PacBio) ...
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bioRxiv - Genomics 2023Quote: ... and the well-prepared libraries were sequenced by PacBio Sequel II with the CCS mode.
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bioRxiv - Evolutionary Biology 2023Quote: ... paradoxus (Downloaded from https://yjx1217.github.io/Yeast_PacBio_2016/data/) (Yue et al. ...
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bioRxiv - Genomics 2023Quote: ... we first assembled each genome from PacBio HiFi data (Extended Data Table 1 ...
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bioRxiv - Genetics 2023Quote: ... and sequenced using the Pacific Bioscience (PacBio) long-read sequencing technology ...
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bioRxiv - Genomics 2023Quote: ... cruzi DNA sequencing was performed using Pacific Bioscience (PacBio) HiFi technology at 100X average read depth.
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bioRxiv - Plant Biology 2023Quote: ... the isoseq3 program from PacBio (commit v0.4.0-121-g22a3096*)17 was used with the cluster option to group the CCS sequences into transcripts ...
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bioRxiv - Cell Biology 2023Quote: Genomic data generated in this study (RNA-seq, PacBio-seq and UMI4C-seq) was submitted to GEO with the Accession GSE160390.
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bioRxiv - Genomics 2023Quote: ... cerasus ‘Montmorency’ only) or flash-frozen in liquid nitrogen and stored at −80°C until extraction (for both PacBio SMRT sequencing and Illumina HiSeq) from a clone of ‘Montmorency’ and an accession of P ...
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bioRxiv - Genetics 2023Quote: ... which preserves 3’ and 5’ end information (PacBio, Menlo Park, CA). A PacBio SMRTbell library was constructed using these PCR-amplified full-length cDNA transcripts and sequenced using a Sequel II ...
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bioRxiv - Evolutionary Biology 2023Quote: ... and their genomes were sequenced by PacBio HiFi mode according to the instructions from the manufacturer ...
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bioRxiv - Developmental Biology 2023Quote: The Cas9-mediated knock-in injection was performed by modifying previously described protocols for CRISPR/Cas9-mediated mutagenesis and used 0,75μg/μl nls-Cas9 protein (PacBio), 75ng/μl of each guide RNA ...
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bioRxiv - Genomics 2023Quote: ... both GATK and DeepVariant indel calls when using Illumina germline sequencing data, and only DeepVariant indel calls when using PacBio germline sequencing data). For GATK indel calls ...
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bioRxiv - Genomics 2023Quote: ... Raw read data used to build the genome (PacBio, RNAseq), for phylogenomics ...
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bioRxiv - Genomics 2023Quote: ... Illumina data (8,605,412 read pairs from accession WV-PRD-2-4, the same collection used for PacBio sequencing) were trimmed with BBDUK v.38.51 (https://sourceforge.net/projects/bbmap ...
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bioRxiv - Genomics 2023Quote: ... libraries were constructed with an average insert size of 15kb using SMRTbell Express Template Prep Kit 2.0 (Pacific Biosciences, Menlo Park, USA) and sequenced by PacBio Sequel II ...
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bioRxiv - Genomics 2023Quote: ... heterostrophus strains sequenced by PacBio (Table S1) included highly backcrossed lab strains C5 (ATCC 48332 ...
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bioRxiv - Genomics 2023Quote: ... and purified with AMPure PB Beads (PacBio). Individual libraries were size-selected using the 0.75% agarose gel cassettes with Marker S1 and High Pass protocol on the BluePippin (Sage Science) ...
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bioRxiv - Genomics 2023Quote: ... end-repair/A-tailing mix and ligated with overhang adapters using SMRTbell Express Template Prep Kit 2.0 (PacBio) and purified with AMPure PB Beads (PacBio) ...
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bioRxiv - Evolutionary Biology 2023Quote: ... SMRTbell libraries (∼20kb) for PacBio Sequel were constructed using SMRTbell Template Prep Kit 1.0 (PacBio, Menlo Park, CA, USA) using the manufacturer’s recommended protocol ...