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Citations for PacBio :
351 - 400 of 1293 citations since 2020
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Developmental Biology 2024Quote: ... The library complex was then sequenced using SMRT Cell 8M on sequel IIe system (PacBio).
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bioRxiv - Evolutionary Biology 2024Quote: Genome assembly from PacBio CLR reads was performed with FALCON-Unzip (Chin et al. ...
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bioRxiv - Evolutionary Biology 2024Quote: ... Resulting phylogenetic trees led to the manual removal of up to 16 sequences (6 OTUs from PR2 and 10 OTUs from the PacBio dataset) due to their long branches and dubious positions (Table S1) ...
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bioRxiv - Genomics 2024Quote: ... and performed long-read sequencing on Sequel II (PacBio, USA).
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bioRxiv - Genomics 2024Quote: ... Multiplexed library preparation was performed using the SMRTbell prep kit 3.0 (PacBio, cat#102-141-700) and SMRTbell barcoded adapter plate 3.0 (PacBio ...
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bioRxiv - Genomics 2024Quote: ... and SMRTbell barcoded adapter plate 3.0 (PacBio, cat#102-009-200). Final sequencing libraries were sequenced on the PacBio Revio platform using v3.2 chemistry.
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bioRxiv - Genomics 2024Quote: ... high molecular weight DNA was extracted from adductor muscle of one individual for single-molecule real-time (PacBio) and Hi-C sequencing ...
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bioRxiv - Genomics 2024Quote: ... PacBio Sequencing primer is then annealed to the SMRTbell template library and sequencing polymerase was bound to them using Sequel II Binding kit 2.0 (PacBio Catalog #101-789-500). The prepared SMRTbell template libraries are then sequenced on a PacBio Sequel IIe sequencer using SMRT Link 10.2 ...
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bioRxiv - Genomics 2024Quote: ... and Version 2.0 sequencing chemistry with 1×1800 sequencing movie run times (PacBio, Menlo Park, CA).
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bioRxiv - Genomics 2024Quote: ... for 2-10 kb size selection and liked sizes are pooled at the equimolar ratios in a designated Degree-of-Pool in the worksheet using PacBio Multiplexing Calculator (PacBio, Benlo Park, CA). The pooled samples are end-repaired ...
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bioRxiv - Genomics 2024Quote: ... The amplified cDNA (11-14 cycles) is purified using 1x AMPure PB beads (PacBio Catalog #100-265-900) for non-size selection or BluePippin (Sage Science ...
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bioRxiv - Genomics 2024Quote: ... SMRTbell libraries were constructed using the SMRTbell Express Template Prep Kit 2.0 (PacBio, CA). Two single-molecule real-time (SMRT ...
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bioRxiv - Genomics 2024Quote: ... The methylation files (motifs and base modifications) of the genome was also obtained from PacBio’s SMRTAnalysis MotifMaker software.
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bioRxiv - Genomics 2024Quote: ... noxia reads were aligned to a SAMv2 genome assembled from PacBio HiFi reads (unpublished data ...
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bioRxiv - Immunology 2024Quote: ... Pooled PCR products were sequenced on a 8M SMRT cell (PacBio Sequel II) by the Leiden Genome Technology Center.
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bioRxiv - Genomics 2024Quote: ... The PacBio Nanobind CBB kit (Pacbio, San Diego CA) was used to extract high molecular weight (50–300+ kbp ...
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bioRxiv - Genomics 2024Quote: ... we followed the protocol described by PacBio (https://www.pacb.com/wp-content/uploads/Procedure-checklist-Preparing-whole-genome-and-metagenome-libraries-using-SMRTbell-prep-kit-3.0.pdf ...
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bioRxiv - Cancer Biology 2024Quote: ... including two additional technologies (Illumina paired-ends and PacBio HiFi). Then ...
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bioRxiv - Plant Biology 2024Quote: ... using SMRTbell express template prep kit 2.0 (PacBio, 102-088-900). The library pool was quantified using a Qubit Fluorometer 3.0 (Invitrogen ...
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bioRxiv - Cancer Biology 2024Quote: ... PCR products were purified using AmpurePB beads (PacBio) according to manufacturer’s instructions and were then subjected to a second round (8 cycles ...
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bioRxiv - Genomics 2024Quote: ... Bam files from PacBio HiFi reads containing DNA methylation kinetics were mapped to satellite-containing Hifiasm contigs using the pbmm2 aligner ...
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bioRxiv - Genomics 2024Quote: ... and treated with SMRTbell cleanup beads (PacBio, Menlo Park, California, USA). The final HiFi libraries were constructed using a SMRTbell Prep Kit v3.0 (PacBio) ...
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bioRxiv - Genomics 2024Quote: ... The final Iso-Seq library was constructed following the PacBio Kinnex PCR protocol (PacBio) and sequenced on one Revio SMRT cell ...
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bioRxiv - Genomics 2024Quote: ... and sequenced for 24 hours in circular consensus sequencing (CCS) mode (PacBio), yielding 65.6 Gbp of HiFi sequencing data.
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bioRxiv - Genomics 2024Quote: ... The Kinnex Iso-Seq library was prepared by first synthesizing cDNA from 300 ng of total RNA using Iso-Seq express 2.0 kit (PacBio) and the size distribution of the resulting cDNA was checked with a Bioanalyzer (Agilent) ...
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bioRxiv - Genomics 2024Quote: ... generating 75.7 Gbp of HiFi reads comprising 85 million transcripts that reduced to 1.65 million isoform transcripts after clustering analysis was done using the IsoSeq software toolkit (https://isoseq.how/, PacBio).
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bioRxiv - Genomics 2024Quote: The fastq files of 5 different long-read protocols sequencing the same iPSC (WTC11) were downloaded from ENCODE LRGASP (CAP_trap_Pacbio: ENCSR309IKK ...
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bioRxiv - Plant Biology 2024Quote: ... to which a Nanobind disk (Nanobind® Plant Nuclei Kit RT, PacBio, 102-302-000) was added ...
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bioRxiv - Plant Biology 2024Quote: ... Sixty grams of leaf tissue was collected and immediately flash frozen in liquid nitrogen before being shipped on dry ice to the Arizona Genomics Institute (AGI, University of Arizona) for high-molecular weight DNA extraction and PacBio Sequel II (PacBio, https://www.pacb.com) sequencing ...
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bioRxiv - Genomics 2024Quote: ... from the PacBio Iso-Seq pipeline (PacBio, 2018). RNA for short-read transcripts underwent Illumina Stranded mRNA library preparation with poly(A ...
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bioRxiv - Genomics 2024Quote: ... collapsed them using isoseq3 v4.0.0 (PacBio, 2018), and assembled the transcriptome using stringtie v2.1.5 (Pertea et al. ...
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bioRxiv - Genomics 2024Quote: DNA for Oxford Nanopore sequencing was prepared using the Nanobind CBB Kit (PacBio) according to the manufacturer’s protocol ...
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bioRxiv - Genomics 2024Quote: ERGA’s sequencing strategy includes Oxford Nanopore Technology (ONT) and/or Pacific Biosciences (PacBio) for long-read sequencing ...
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bioRxiv - Genomics 2024Quote: ... Library preparation was conducted using the SMRTbell Express Template Prep Kit 3.0 (PacBio, #102-182-700), following the manufacturer’s protocol ...
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bioRxiv - Genomics 2024Quote: ... (referred to as “1KGP” 9, 4,718 SVs detected using PacBio RSII by Peter et al ...
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bioRxiv - Genomics 2024Quote: ... PacBio HiFi libraries were generated and sequenced on a Sequel II (PacBio) by the Functional Genomics Core at the University of California ...
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bioRxiv - Genomics 2024Quote: The PacBio reads were processed using SMRTTools (v6.0.0-1, PacBio) to generate the circular consensus sequences using the settings --minPasses=3 --minRQ=0.99 ...
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bioRxiv - Genomics 2024Quote: ... generated from PacBio HiFi reads ...
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bioRxiv - Genomics 2024Quote: ... trachurus assembly was generated from PacBio single-pass CLR reads ...
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bioRxiv - Genomics 2024Quote: Total genomic DNA was extracted from cell pellets using Qiagen QIAamp DNA Micro Kit and the high molecular weight fraction was purified using a short read elimination kit (PacBio), which depletes the sample from all DNA fragments <10kb ...
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bioRxiv - Genomics 2024Quote: ... which uses 3mm Nanobind disks (Circulomics/PacBio, US). The HMW DNA was sheared to a target size of 30kb with the DNA Fluid + needles at speed 45 for two cycles on a Megaruptor3 instrument (Diagenode).
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bioRxiv - Genomics 2024Quote: ... using a Sequel II SMRT Cell 8M along with a Sequel II Binding Kit 3.2 and Sequel II Sequencing Kit 2.0 (PacBio). These library preparations and sequencings were performed at the National Institute of Genetics Japan (NIG ...
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bioRxiv - Genomics 2024Quote: ... DNA was extracted from a piece of foot using Nanobind Tissue Big DNA Kit (PacBio, US) for short-read sequencing and QIAGEN Genomic-tip 100/G (QIAGEN ...
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bioRxiv - Genomics 2024Quote: ... Libraries were prepared using SMRT-bell Express Template Prep kit 2.0 (PacBio, #100-938-900) according to the manufacturer’s protocol ...
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bioRxiv - Genomics 2024Quote: ERGA’s sequencing strategy includes Oxford Nanopore Technology (ONT) and/or Pacific Biosciences (PacBio) for long-read sequencing ...
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bioRxiv - Cancer Biology 2024Quote: ... are validated by at least one external method (xTea-SR or xTea-LR) or an additional technology (Illumina paired-ends or PacBio HiFi). To validate the fraction of MEIGA private calls (i.e. ...
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bioRxiv - Genomics 2024Quote: ... using the Circulomics Nanobind tissue kit (PacBio, Menlo Park, California) as per the manufacturer’s protocols ...
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bioRxiv - Genomics 2024Quote: ... Sequencing Primer v5 (PacBio™) and Sequel II Sequencing Plate v2.0 (PacBio™) ...
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bioRxiv - Genomics 2024Quote: All subreads from PacBio sequencing for each breed were assembled using Falcon (v2018.03.12 ...
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bioRxiv - Genomics 2024Quote: RNA was processed using the Iso-Seq Express 2.0 workflow (PacBio™), targeting transcripts up to 2 kb ...