Labshake search
Citations for PacBio :
501 - 550 of 1293 citations since 2020
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Genomics 2023Quote: ... and loaded onto PacBio Sequel using the MagBead Kit V2 (PacBio). Sequencing was performed on the PacBio Sequel SMRT cell ...
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bioRxiv - Genomics 2023Quote: ... The pooled library was bound to polymerase using the Sequel Binding Kit 2.0 (PacBio) and loaded onto PacBio Sequel using the MagBead Kit V2 (PacBio) ...
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bioRxiv - Genomics 2023Quote: ... The PacBio SMRTbell library (∼20kb) for PacBio Sequel was constructed using SMRTbell Template Prep Kit 1.0 (PacBio, Menlo Park, CA, USA) using the manufacturer recommended protocol ...
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bioRxiv - Genomics 2023Quote: ... nine isoforms were annotated at Rcan1 (cDNA-PacBio), while Gan displayed the most diversity in polyadenylation with ten poly(A ...
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bioRxiv - Genomics 2023Quote: ... vulgaris (PacBio; accession number SRX3402137 ...
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bioRxiv - Bioengineering 2023Quote: ... A ready-to- sequence SMRTBell Polymerase Complex was created using a Binding Kit 3.2 (PacBio) and the Sequel II primer 3.2 ...
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bioRxiv - Genomics 2023Quote: ... Double-stranded cDNA was purified with non-size selection AMPure PB beads (PacBio). The amplified cDNA was ligated with blunt-end PacBio sequencing adaptors using SMRTbell Template Prep Kit ...
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bioRxiv - Genomics 2023Quote: ... The ligated products were treated by exonuclease to remove un-ligated products and purified by AMPure PB beads (PacBio). The sequencing was performed on the PacBio Sequel II platform.
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bioRxiv - Genomics 2023Quote: ... The mean number of isoforms annotated per locus per library ranged from 2.58 (cDNA-PacBio) to 1.28 (CapTrap-PacBio ...
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bioRxiv - Genomics 2023Quote: ... while Gan displayed the most diversity in polyadenylation with ten poly(A) sites annotated (cDNA-PacBio).
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bioRxiv - Genomics 2023Quote: ... The mean number poly(A) sites annotated per locus per library ranged from 2.42 (cDNA-PacBio) to 1.12 (dRNA-ONT ...
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bioRxiv - Genomics 2023Quote: ... with 12 reported in three libraries (cDNA-PacBio, cDNA-ONT, and CapTrap-ONT). For mouse ...
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bioRxiv - Genomics 2023Quote: ... in human and from 2.5 (cDNA-PacBio) to 1.38 (dRNA-ONT) ...
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bioRxiv - Genomics 2023Quote: ... The loci with the most annotated alternative splicing were ANGPT1 (cDNA-PacBio library), RERG ZADH2 (CapTrap-ONT ...
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bioRxiv - Plant Biology 2023Quote: ... the PacBio RNA sequence data were analyzed using tools from Isoseq1 and Isoseq2 software distributions from PacBio, but the analysis was limited by the slow run time of the earlier algorithms ...
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bioRxiv - Molecular Biology 2023Quote: High molecular weight DNA was extracted from frozen pellets (1 million cells) using the Nanobind HMW DNA Extraction kit (PacBio) following the manufacturer’s instructions ...
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bioRxiv - Evolutionary Biology 2023Quote: ... Using SMRTBell template Prep Kit 1.0 and SMRTbell Barcoded Adaptater kit 8A or 8B kits (PacBio), samples (1 µg ...
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bioRxiv - Evolutionary Biology 2023Quote: ... paradoxus (Downloaded from https://yjx1217.github.io/Yeast_PacBio_2016/data/) (Yue et al. ...
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bioRxiv - Evolutionary Biology 2023Quote: ... The library was prepared using the SMRTbell express Kit (PacBio, Menlo Park, CA, USA), and sequenced on the Sequel platform with six SMRT cells (PacBio) ...
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bioRxiv - Immunology 2023Quote: ... 1 µL of 10 µM 3’ nucleotide tagging primer (PacBio_3pri_C or PacBio_3pri_G), 20 µL KOD Hot Start Master Mix ...
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bioRxiv - Immunology 2023Quote: ... 1 µL of 10 µM 3’ PacBio round 2 reverse primer (PacBio_3pri_RND2), and 25 µL KOD Hot Start Master Mix ...
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bioRxiv - Genomics 2023Quote: ... The library was bound to polymerase using the Sequel II Binding Kit 2.0 (PacBio) and loaded onto PacBio Sequel II ...
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bioRxiv - Molecular Biology 2023Quote: ... The RNA quality was assessed with the Agilent 2100 Bioanalyzer (for PacBio sequencing) or Agilent 4150 TapeStation System (for MinION sequencing ...
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bioRxiv - Genomics 2023Quote: ... and cleanup using a SMRTbell Express Template Prep Kit 2.0 (PacBio). Sequencing primer was annealed and polymerase binding ...
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bioRxiv - Genomics 2023Quote: ... according to the procedure and checklist (i.e., Iso-Seq™ Express Template Preparation for Sequel® and Sequel II Systems) provided by PacBio. Amplified cDNA samples were purified with ProNex beads (Promega ...
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bioRxiv - Genomics 2023Quote: ... and sample loading was performed with a Sequel II binding kit 2.1 and internal control 1.0 (PacBio) following the manufacturer’s protocol ...
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bioRxiv - Genomics 2023Quote: ... only isoforms that were either determined not to be artifacts by the machine learning filter or that were detected by other long-read studies with brain samples were retained (Data provided by GTEx [20] and PacBio (https://www.pacb.com/general/data-release-alzheimer-brain-isoform-sequencing-iso-seq-dataset/)) ...
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bioRxiv - Genomics 2023Quote: ... and Iso-Seq Express Oligo Kit (Pacific Biosciences (PacBio), CA ...
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bioRxiv - Genetics 2023Quote: HiFi SMRTbell libraries were constructed according to the manufacturer’s manual by using SMRTbell Express Template Prep Kit 2.0 (PacBio, 100-938-900). For all samples ...
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bioRxiv - Genomics 2023Quote: ... Iso-seq data was analyzed using CCS (v6.4.0) (https://ccs.how/; PacBio, 2021), lima (v2.6.0 ...
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bioRxiv - Genomics 2023Quote: ... For full-length transcriptome sequencing (PacBio Iso-seq), about 5 μg mRNA was reverse-transcribed into full-length cDNA molecules with SMARTer™ PCR cDNA Synthesis Kit and the cDNA was further amplified by PCR ...
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bioRxiv - Genomics 2023Quote: ... we sheared 10 µg of HMW DNA to an average fragment size of of 24 kb and prepared two independent non-barcoded HiFi SMRTbell libraries using SMRTbell Express Template Prep Kit 2.0 (PacBio). We pooled the two libraries and performed size-selection with a BluePippin (SageScience ...
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bioRxiv - Genomics 2023Quote: ... High-quality long-read datasets (PacBio and Nanopore) are available for chicken (see Supplementary Table 3) ...
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bioRxiv - Genomics 2023Quote: ... long-read (PacBio and Nanopore), and short-read (Illumina ...
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bioRxiv - Genomics 2023Quote: ... and the Express Template Prep Kit v2 and SMRTbell Cleanup Kit v2 (PacBio). The library was size-selected on a PippinHT instrument (Sage Science ...
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bioRxiv - Genomics 2023Quote: ... and adaptive loading targets of 0.8-0.85 (PacBio). Circular consensus calling was performed with CCS version 6.0.0 (SMRT Link v.10.1 ...
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bioRxiv - Genomics 2023Quote: ... cruzi DNA sequencing was performed using Pacific Bioscience (PacBio) HiFi technology at 100X average read depth.
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bioRxiv - Genomics 2023Quote: ... euphorbiae were prepared from head tissues (52.2 mg and 40.6 mg; the same single individuals used for PacBio genome sequencing and genome size estimation ...
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bioRxiv - Genomics 2023Quote: The HiFi SMRTbell library was constructed using the SMRTbell Express Template Prep Kit v2.0 (Pacific Biosciences -PacBio, Menlo Park, CA, Cat. #100-938-900) according to the manufacturer’s instructions ...
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bioRxiv - Genomics 2023Quote: ... or Circulomics Nanobind Tissue kit (Pacbio 102-302-100). The linked read library was prepared using the Chromium Genome Reagent Kit v2 following the protocol provided by 10x Genomics ...
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bioRxiv - Plant Biology 2023Quote: ... The library was sequenced on a PacBio Sequel platform using the 2.0 chemistry (PacBio). A paired-end genomic libraries with an insert size of 470 bp was prepared using the Genomic DNA Sample Prep kit (Illumina ...
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bioRxiv - Genetics 2023Quote: ... and sequenced using the Pacific Bioscience (PacBio) long-read sequencing technology ...
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bioRxiv - Genomics 2023Quote: ... we first assembled each genome from PacBio HiFi data (Extended Data Table 1 ...
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bioRxiv - Genomics 2023Quote: ... Iso-Seq data were processed using SMRT LINK v11.0 (PacBio, CA) and TAMA 22 ...
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bioRxiv - Plant Biology 2023Quote: ... The resulting contigs were then corrected with PacBio long reads using the Arrow program in the SMRT-link-5.1 package (PacBio). Illumina paired-end genome sequencing reads were processed with Trimmomatic (v0.36 ...
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bioRxiv - Microbiology 2023Quote: ... Among the motifs not validated by PacBio data ...
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bioRxiv - Genomics 2023Quote: ... An Iso-Seq cDNA library was generated with the Iso-Seq Express Oligo Kit and the SMRTbell Express Template Prep Kit 2.0 (PacBio). The Iso-Seq library was sequenced using a single SMRTcell on a Sequel I at the D-BSSE (Basel ...
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bioRxiv - Genomics 2023Quote: ... The library was bound to polymerase using the Sequel II Binding Kit 2.0 (PacBio) and loaded onto PacBio Sequel II ...
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bioRxiv - Genomics 2023Quote: ... The PacBio SMRTbell library (∼20 kbp mean insert length) for PacBio Sequel was constructed using SMRTbell Express Template Prep Kit 2.0 (PacBio, Menlo Park, CA, USA) using the manufacturer’s recommended protocol ...
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bioRxiv - Genomics 2023Quote: ... genomic sequencing libraries were constructed according to the protocol recommended by PacBio. Long reads generated from the PacBio platform were used for genome assembly ...