Labshake search
Citations for Illumina :
8501 - 8550 of 10000+ citations since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Genomics 2023Quote: FASTQ files of sequenced samples from Illumina MiSeq or NextSeq were trimmed for adapter sequences using cutadapt (v3.5) ...
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bioRxiv - Immunology 2023Quote: ... Samples were then rRNA and globin depleted using the Ribo-Zero™ kit (Illumina, San Diego, CA, USA) and the GLOBINclear™ kit (Invitrogen ...
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bioRxiv - Immunology 2023Quote: ... Sequencing was performed on a MiSeq 250PE flow cell (Illumina).
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bioRxiv - Microbiology 2023Quote: ... Host ribosomal RNA (rRNA) was depleted using the Ribo-Zero Plus Kit (Illumina) and paired-end sequencing (150 bp ...
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bioRxiv - Microbiology 2023Quote: ... mRNA libraries for RNA sequencing were prepared using TruSeq Stranded mRNA Library Prep Kit (Illumina, USA), the quality of the library analyzed via Bioanalyzer (Agilent ...
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bioRxiv - Microbiology 2023Quote: Short-read Illumina libraries were created with TruSeq Nano DNA HT sample preparation kits (Illumina, San Diego, CA, USA) following the manufacturer’s protocol ...
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bioRxiv - Microbiology 2023Quote: ... Sequencing libraries were generated using the TruSeq DNA Sample Preparation Kit (Illumina, USA) and the Template Prep Kit (Pacific Biosciences ...
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bioRxiv - Microbiology 2023Quote: ... Initial processing of raw sequencing data was managed by Illumina’s software (Illumina ...
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bioRxiv - Microbiology 2023Quote: ... utilizing a MiSeq reagent kit v2 (Illumina). Subsequently ...
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bioRxiv - Microbiology 2023Quote: ... Contaminant removal was then carried out to filter out all reads that have a 31-mer match to PhiX (a common Illumina spikein) allowing one mismatch ...
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bioRxiv - Microbiology 2023Quote: ... The shortened PacBio reads and the cleaned short-reads from Illumina libraries were competitively mapped (i.e. ...
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bioRxiv - Microbiology 2023Quote: ... Libraries for high-throughput sequencing of PCR products were prepared following the “16S Metagenomic Sequencing Library Preparation” protocol by Illumina, using primers with extensions containing the adapters and the MiSeq Reagent Kit v2 (CaBM_D219A_Fw and CaBM_D219A_Rv ...
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bioRxiv - Microbiology 2023Quote: ... Libraries were prepared using the Nextera XT DNA library preparation kit (Illumina), adhering to the manufacturer’s instructions ...
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bioRxiv - Microbiology 2023Quote: ... and the libraries were sequenced on a MiSeq Device (Illumina, San Diego, CA USA). Sequence analysis was performed using CLC Genomics Workbench (Qiagen ...
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bioRxiv - Microbiology 2023Quote: ... All plasmid constructs were confirmed by Sanger sequencing at the Massachusetts General Hospital CCIB DNA Core facility or by Illumina sequence at SeqCenter ...
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bioRxiv - Molecular Biology 2023Quote: ... Libraries were pooled at equimolar concentrations and run on the MiSeq Micro V2 300 cycle kit (Illumina, PE150) using 5 pM with 20% PhiX ...
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bioRxiv - Molecular Biology 2023Quote: ... DNA libraries were prepared from 1µg DNA using the NEBNext Ultra II DNA Library Prep Kit (Illumina) following manufacturer’s instructions and sequencing was performed by Novogene (Cambridge ...
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bioRxiv - Molecular Biology 2023Quote: ... Fragmented genomic DNA libraries were produced from 10 ng of each sample treated with 1.5 µl of Nextera XT tagmentase (Illumina) at 37°C for 45 min with gentle shaking ...
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bioRxiv - Microbiology 2023Quote: Amplicon pools were extracted from the raw sequencing data using the FASTQ workflow in BaseSpace (Illumina) with default parameters65 ...
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bioRxiv - Microbiology 2023Quote: Sequencing of the 16S rRNA gene V4 amplicons was performed on the Illumina MiSeq platform (Illumina Inc, Cambridge, UK). Raw sequence data were imported into the quantitative insights into microbial ecology (QIIME ...
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bioRxiv - Microbiology 2023Quote: ... The pooled library was sequenced on MiSeq platform (Illumina) with paired-end strategy ...
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bioRxiv - Microbiology 2023Quote: The gDNA library was prepared with Nextera XT DNA Library Preparation Kit (Illumina, FC-131-1096) and Nextera XT Index Kit v2 (Illumina ...
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bioRxiv - Microbiology 2023Quote: ... Ribo-Zero Plus rRNA Depletion Kit (Illumina) was applied according to manufacturers’ instructions ...
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bioRxiv - Microbiology 2023Quote: ... and IDT® for Illumina® DNA/RNA UD Indexes Set D (Illumina #20042667). Concentrations of 1.8 × AMPure XP magnetic bead purified libraries were measured using Qubit™ 1× dsDNA High Sensitivity Assay Kit (Thermo #Q33231 ...
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bioRxiv - Microbiology 2023Quote: ... Fastq sequence files were generated using bcl2fastq version 2.20 (Illumina). The samples went through two steps of quality assessment ...
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bioRxiv - Microbiology 2023Quote: Metagenomic libraries were prepared from the double-stranded cDNA using the Illumina DNA Prep with Enrichment Kit (Illumina #20025524) and IDT® for Illumina® DNA/RNA UD Indexes Set D (Illumina #20042667) ...
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bioRxiv - Microbiology 2023Quote: ... Reverse and forward amplicon PCR primers recommended by Illumina were used (16s Amplicon PCR Forward Primer= TCGTCGGCAGCGTCAGATGTGTATAAGAGACAGCCTACGGGNGGCWGCAG ...
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bioRxiv - Microbiology 2023Quote: The paired-end .fastq files generated from Illumina sequencer were trimmed using Trim Galore [85] (v0.6.10 ...
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bioRxiv - Microbiology 2023Quote: ... Sequencing libraries were generated using TruSeq® DNA PCR-Free Sample Preparation Kit (Illumina, USA) following the manufacturer’s instructions ...
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bioRxiv - Microbiology 2023Quote: ... a sequencing library was generated from 1 ng of the resulting SAG DNA with the NexteraXT library preparation kit (Illumina, San Diego, CA, USA) and the library was then sequenced on an Illumina MiSeq instrument (2×300 bp) ...
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bioRxiv - Microbiology 2023Quote: Raw data generated from Illumina (n=22) and PacBio (n=2 ...
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bioRxiv - Microbiology 2023Quote: ... we then sought to remove BioProjects containing pyrosequencing data and other sequencing instruments that use processes dissimilar from Illumina sequencing ...
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bioRxiv - Microbiology 2023Quote: Raw sequence data were demultiplexed into sample-specific fastq files using bcl2fastq conversion software from Illumina. Adapter residues were trimmed from both the 5′- and the 3′-end of the reads using the AdapterRemoval v292 ...
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bioRxiv - Microbiology 2023Quote: ... Unique Dual Index Primer pairs (NEBNext Multiplex Oligos for Illumina) were used to index the samples ...
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bioRxiv - Microbiology 2023Quote: ... Libraries were sequenced on the Illumina NextSeq500 platform with paired ends for 2 x 150-base pair reads using a Mid-output cartridge Kit v2.5 (Illumina, 20024905). bcl2fastq software was used to demultiplex and compress bcl files into fastq (gz ...
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bioRxiv - Microbiology 2023Quote: ... 2×125 bp paired-end library preparation and WGS analysis on a HiSeq 2500 platform (Illumina) was performed by BaseClear (Leiden ...
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bioRxiv - Microbiology 2023Quote: ... and Respiratory Virus Oligo Panel v2 (Illumina #20044311). Tagmented cDNAs were amplified to add indexes and adapters ...
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bioRxiv - Microbiology 2023Quote: ... DNA libraries were prepared using the Nextera Library Preparation Biochemistry (Illumina). Shotgun sequencing was performed with the Illumina platforms Nextseq 500 (170 bp + 140 bp ...
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bioRxiv - Microbiology 2023Quote: ... Ribosomal RNA depletion was performed with Ribo-Zero Plus rRNA Removal Kit (Illumina Inc., CA, USA). Samples were primed and fragmented based on the recommendation of the manufacturer ...
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bioRxiv - Microbiology 2023Quote: ... and preparing libraries for metagenomic sequencing using the Nextera DNA Flex Library Prep kit (Illumina 20018705). We re-calculated the number of fixed differences between each pair of populations with median sequencing coverage >5 after including these re-sequenced samples in our dataset ...
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bioRxiv - Microbiology 2023Quote: ... Samples were sent to Macrogen (South Korea) for sequencing (Illumina Miseq with TruSeq libraries and ribosomal RNA depletion ...
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bioRxiv - Microbiology 2023Quote: ... The NGS library was prepared with the Nextera XT DNA Library prep kit following manufacturer’s instructions with changes (Illumina #FC-131-1096). Initially ...
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bioRxiv - Microbiology 2023Quote: ... sequencing was performed on an Illumina NextSeq500 using the Nextera XT library kit (Illumina Inc., San Diego, CA, USA) and assemblies were producted using fq2dna v21.06 (gitlab.pasteur.fr/GIPhy/fq2dna ...
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bioRxiv - Microbiology 2023Quote: ... Whole genome sequencing (WGS) by Illumina and/or Nanopore MinION was used to control several key strains ...
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bioRxiv - Microbiology 2023Quote: ... An 8pM library with 10% PhiX control was sequenced on the MiSeq instrument (Illumina) with the MiSeq reagent Kit 500v2 cycle kit at 2 x 200bp as pairend reads ...
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bioRxiv - Microbiology 2023Quote: ... which were sequenced using the Illumina MiSeq PE300 platform (Illumina, California, USA).
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bioRxiv - Microbiology 2023Quote: ... and adapter trimming was performed with bcl-convert (v3.9.3; Illumina). Geneious Prime v2022.2.2 was used to map the reads to the reference genome (630 ...
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bioRxiv - Microbiology 2023Quote: ... Genomic DNA libraries were prepared using the Nextera XT Library Prep Kit (Illumina, San Diego, USA) following the manufacturer’s protocol with the following modifications ...
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bioRxiv - Microbiology 2023Quote: ... Ligation (Illumina). Purified libraries were quantified using the Kapa Library Quantification Kit (Roche) ...
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bioRxiv - Microbiology 2023Quote: ... M9-glycerol or at distinct phases of infection) was subjected to tagmentation using the Nextera DNA Library Prep Kit (Illumina). The DNA was mixed with 10 μL of 2x TD Buffer and 5 μL of Tagment DNA Enzyme TDE1 (diluted 1/50 in 0.5x TE buffer and 50 % (v/v ...