Labshake search
Citations for Illumina :
8401 - 8450 of 10000+ citations since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Neuroscience 2023Quote: ... Raw base calls were demultiplexed and converted into sample specific fastq files using default parameters of the bcl2fastq program (v 2.20, Illumina). Trimmed reads (TrimGalore ...
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bioRxiv - Neuroscience 2023Quote: ... were used to initiate the TruSeq ChIP Sample Prep Kit library preparation protocol with modifications for CUT&RUN sample input (Illumina Cat# IP-202-1012). The fragmented chromatin underwent end repair and 3’ adenylation prior to Illumina indexed adapter ligation ...
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bioRxiv - Molecular Biology 2023Quote: ... and were subject to 100 nt paired-end sequencing (Illumina NovaSeq S1 (XP)) to generate 22∼30 million mapped reads per sample at the UCLA Neuroscience Genomics Core (UNGC ...
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bioRxiv - Molecular Biology 2023Quote: ... and TDE1 Nextera Tn5 Transposase (Illumina, #FC-121-1030) and incubated for 30 minutes at 37°C ...
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bioRxiv - Neuroscience 2023Quote: RNA library preparation was performed using TruSeq Stranded mRNA library prep kit (Illumina, cat. no 20020594) according to the manufacturer’s protocol ...
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bioRxiv - Molecular Biology 2023Quote: ... and 2) Detection from Illumina RNA-seq data through SL leader sequence trimming(43) ...
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bioRxiv - Neuroscience 2023Quote: Both the library prep and the sequencing was conducted by the Genomics Core Facility at Newcastle University on a Illumina NextSeq 500 (Illumina Inc.). Library prep was performed using the SmartSeq and Nextera XT kits ...
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bioRxiv - Molecular Biology 2023Quote: ... Paired-end (PE150) sequences were generated using a NovaSeq 6000 apparatus (Illumina) by Novogen (Cambridge ...
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bioRxiv - Molecular Biology 2023Quote: ... Only target amplicon sequences under 350 bp size were chosen (length which is adapted for Illumina PE-250 sequencing) and subjected to alignment against the NCBI database using the Basic Local Alignment Search Tool (BLAST) ...
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bioRxiv - Molecular Biology 2023Quote: ... Pan-Prokaryote riboPOOL (siTOOLs Biotech) or Ribo-Zero rRNA Removal Kit for Bacteria (Illumina). rRNA-depleted RNA was treated with RppH (NEB) ...
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bioRxiv - Neuroscience 2023Quote: ... Libraries were multiplexed using NEBNext Multiplex Oligos for Illumina (dual index primers) and paired-end sequenced (42 bp) on the NextSeq 500 platform (Illumina) in accordance with the manufacturer’s protocol.
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bioRxiv - Molecular Biology 2023Quote: ... followed by sequencing (Illumina HiSeq 3000).
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bioRxiv - Molecular Biology 2023Quote: ... Paired-end strand specific libraries were constructed using the TruSeq stranded mRNA (polyA) Librabry Prep Kit (Illumina) and were subject to 100 nt paired-end sequencing (Illumina NovaSeq S1 (XP) ...
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bioRxiv - Molecular Biology 2023Quote: ... Lysed cells were then treated with 2xTD reaction buffer (Illumina, #FC-121-1030) and TDE1 Nextera Tn5 Transposase (Illumina ...
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bioRxiv - Neuroscience 2023Quote: ... Amplicon next generation sequencing was performed by BMFZ-GTL Düsseldorf (GE) with a MiSeq system (Illumina, USA).
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bioRxiv - Microbiology 2023Quote: Amplicons were purified and barcoded libraries were prepared according to the Illumina guidelines (Illumina, San Diego, CA, USA) and sequenced paired-end with 2×250 cycles for 16S V3-V4 libraries and 2127 cl:204300 cycles for ITS2 libraries on an Illumina MiSeq platform (Next Generation Sequencing Facilities ...
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bioRxiv - Microbiology 2023Quote: ... Illumina shotgun libraries were prepared using the Nextera XT DNA Sample Preparation Kit and subsequently sequenced on a MiSeq system with the reagent kit v3 with 600 cycles (Illumina, San Diego, CA, USA) as recommended by the manufacturer ...
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bioRxiv - Genomics 2023Quote: ... The DNA was purified by phenol:chloroform and libraries were prepared using the TruSeq ChIP Library Preparation Kit from Illumina following the manufacturer’s protocol ...
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bioRxiv - Genomics 2023Quote: ... with Illumina Stranded mRNA Prep kit (Illumina, Cat. No. 20040534) and IDT for Illumina RNA UD Indexes Set A Ligation (Illumina ...
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bioRxiv - Genomics 2023Quote: ... Sequencing was performed on a NovaSeq 6000 platform (Illumina) by Azenta for approximately 220 million paired end 2×150bp reads per sample.
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bioRxiv - Microbiology 2023Quote: ... Ribosomal RNA was removed with Ribo-Zero rRNA depletion kit (Illumina) prior to cDNA synthesis using random hexamer primers ...
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bioRxiv - Microbiology 2023Quote: ... The libraries were sequenced in a 250-bp paired-end run using the MiSeq Reagent Kit v2 (Illumina; 500 cycles).
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bioRxiv - Cancer Biology 2023Quote: ... Normalized libraries were then pooled and sequenced on a Novaseq 6000 (Illumina).
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bioRxiv - Cancer Biology 2023Quote: ... barcoded with Nextera dual indexes from Illumina and PCR amplified for up to 11 cycles ...
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bioRxiv - Cancer Biology 2023Quote: ... Exome capture was achieved in pools of 3 and subjected to paired end 75 sequencing on a NovaSeq platform (Illumina, San Diego, USA) at 40x depth for blood samples and 80x depth for tumour samples ...
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bioRxiv - Cancer Biology 2023Quote: DNA libraries were produced from 50 ng of genomic DNA using the Nextera Rapid Capture Exome kit (Illumina, San Diego, USA) as per manufacturer’s instructions ...
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bioRxiv - Cancer Biology 2023Quote: ... Sequencing was performed using NovaSeq 6000 platform (Illumina) with 151 paired-end reads to an average target depth of 30-50X for germline and 125X coverage for somatic samples using S1 reagents for 300 cycles ...
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bioRxiv - Cancer Biology 2023Quote: 0.5×105 MIA PaCa-2 cells for each treated condition/replicate infected was collected and treated with transposase Tn5 (Nextera Tn5 Transposase; Illumina Cat #FC-121-1030). DNA was purified using AMPure XP beads to remove large fragments (0.5 × beads ...
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bioRxiv - Neuroscience 2023Quote: ... The cDNA samples that passed quality control were used to generate sequencing libraries using the Nextera XT DNA Library Preparation Kit (Illumina), following the user guide ...
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bioRxiv - Cancer Biology 2023Quote: ... and sequenced with PE42 sequencing on the NovaSeq 6000 sequencer (Illumina). Reads were aligned using the BWA algorithm (mem mode ...
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bioRxiv - Biophysics 2023Quote: ... while the reverse primer (3’ P7 Illumina adapter) differed by the barcode index (Supplementary Table 3 ...
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bioRxiv - Biochemistry 2023Quote: ... Barcoded samples were pooled and submitted for sequencing on a NovaSeq 6000 (Illumina). To identify D sites via NaBH4-induced mutations ...
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bioRxiv - Bioengineering 2023Quote: Pair-end libraries (2×150 bp) were prepared from 1 µg of genomic DNA of the evolved isolates and sequenced using an MiSeq sequencer (Illumina).
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bioRxiv - Biochemistry 2023Quote: ... Libraries were then performed by PCR with a library preparation kit (Vazyme, TD501) and sequencing was done using the Novaseq system (Illumina) according to the manufacturer’s protocol.
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bioRxiv - Cancer Biology 2023Quote: ... Pooled libraries were sequenced on a NovaSeq6000 SP 100-cycle flow cell (Illumina, San Diego, CA).
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bioRxiv - Cancer Biology 2023Quote: ... Sequencing was performed on a Nextseq 2000 platform (Illumina) aiming for a minimum of 50,000 reads/cell.
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bioRxiv - Cancer Biology 2023Quote: ... end repaired and ligated with the appropriate indexed adaptors using the IDT for Illumina RNA UD unique dual indexes (UDI) (Illumina 20040553) to yield strand specific RNA-seq libraries ...
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bioRxiv - Cancer Biology 2023Quote: ... Libraries were prepared by the Sequencing Facility at NCI-Leidos using the TruSeq Stranded mRNA Kit (Illumina, San Diego, CA) and sequenced paired-end on NextSeq (Illumina ...
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bioRxiv - Cancer Biology 2023Quote: ... and sequenced paired-end on NextSeq (Illumina) with 2 x 101 bp read lengths ...
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bioRxiv - Cancer Biology 2023Quote: ... Total RNA input ranging from 64.4 ng – 1000 ng was used to initiate the Illumina Stranded Total RNA Prep Ligation with Ribo-Zero Plus (Illumina 20040525) library preparation ...
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bioRxiv - Cancer Biology 2023Quote: ... The 100-cycle paired end sequencing run was performed using a NovaSeq 6000 S1 Reagent Kit v1.5 200 cycle (Illumina 20028318). Sequence data was converted to fastq files ...
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bioRxiv - Cancer Biology 2023Quote: Purified RNA was used for preparation of the sequencing library by using the TruSeq Stranded mRNA Library Prep Kit (Illumina, San Diego, CA, USA) in accordance with the manufacturer’s instructions ...
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bioRxiv - Cancer Biology 2023Quote: The purified RNA was used for the preparation of the sequencing library by TruSeq Stranded mRNA Library Prep Kit (Illumina, San Diego, CA, USA) following the manufacturer’s recommendations ...
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bioRxiv - Cancer Biology 2023Quote: ... Each single-cell RNA-seq library was sequenced twice in two lanes of HiSeq 4000 (Illumina) to obtain single-end ...
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bioRxiv - Cancer Biology 2023Quote: ... RNA was sequenced on a NovaSeq 6000 (Illumina). Raw sequencing read data was checked and visualized for quality using FastQC (v0.11.5) ...
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bioRxiv - Cancer Biology 2023Quote: ... 1 ng DNA was used to generate the sequencing library by using Nextera XT DNA Library Preparation Kit (Illumina).
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bioRxiv - Cancer Biology 2023Quote: ... the Truseq Stranded mRNA kit (Illumina) was used with an input of 100 nanograms of total RNA ...
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bioRxiv - Cancer Biology 2023Quote: ... Libraries from each sample were pooled together and sequenced on the Illumina HiSeq 4000 (Illumina). Reads were mapped to the hg19 reference genome using GSNAP40 ...
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bioRxiv - Cancer Biology 2023Quote: ... the libraries were generated using Smart-Seq2 RNA (Illumina) according to the manufacturer’s instructions and paired-end sequenced using the Nextseq-550 High Output Kit v2.5.
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bioRxiv - Cancer Biology 2023Quote: ... The samples were then submitted to the for Miseq and Novaseq deep sequencing (Illumina). Two technical replicates were performed on cells from the same library transformation ...