Labshake search
Citations for Illumina :
8651 - 8700 of 10000+ citations since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Immunology 2023Quote: ... and clustering were performed using the TruSeq RNA-Seq Sample Prep v2 Guide (Illumina, Part # 15026495 Rev F) using the Low Sample Protocol ...
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bioRxiv - Immunology 2023Quote: ... After library preparation (Illumina, PolyA selection), samples were sequenced using Illumina ...
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bioRxiv - Genetics 2023Quote: ... in Genome Studio 2.0 (Illumina, USA) the analysis of the A and C genome SNPs was done using the recommended cluster file (Clarke et al ...
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bioRxiv - Genetics 2023Quote: ... Libraries were prepared using the Illumina TruSeq stranded RNA sample preparation kit (Illumina, Inc., San Diego, CA) and sequenced with the Illumina HiSeq2500 system ...
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bioRxiv - Genetics 2023Quote: ... DNA concentrations were measured using quantitative PCR prior to cluster generation on the Illumina cBotwhich is a highly advanced automated clonal amplification system at the core of the Illumina sequencing process (Illumina, USA). Finally ...
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bioRxiv - Genetics 2023Quote: ... All samples were sequenced with Illumina NextSeq 550/2000 platform (Illumina, San Diego, CA, USA) using a 300 cycle kit and a read-length of 150 bp paired-end reads.
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bioRxiv - Genetics 2023Quote: ... The sequencing was performed by the HiSeqX or NovaSeqX Plus sequencer (Illumina).
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bioRxiv - Cancer Biology 2023Quote: Raw sequencing data (bcl. files) were demultiplexed into forward and reverse reads for each sample using bcl2fastq v2.20.0 from Illumina and concatenated across lanes ...
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bioRxiv - Cancer Biology 2023Quote: ... Basecalls were converted to fastq files using bcl2fastq (Illumina). Fastq files were trimmed for adapter sequences using the autodetect feature in trim_galore (version 0.6.5 ...
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bioRxiv - Genetics 2023Quote: ... The resulting libraries were 150 bp paired-end sequenced by the HiSeqX or NovaSeqX Plus sequencer (Illumina).
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bioRxiv - Genetics 2023Quote: ... the genetic makeup of each animal was determined by genotyping them using a 140k BovineHD BeadChip (Illumina Inc. in San Diego, California, USA). The PLINK program [39] performed quality assurance checks on genotyping data ...
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bioRxiv - Evolutionary Biology 2023Quote: ... multiplexed and sequenced as 150 bp paired-end reads using two lanes on an Illumina Hi-Seq 2000 (Illumina, San Diego, CA, USA) through Novogene (Beijing ...
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bioRxiv - Bioengineering 2023Quote: ... The FASTQ files that were generated from the sequencing were demultiplexed using the bcl2fastq v2.20 Conversion Software (Illumina). The quality of the demultiplexed FastQ files was then evaluated using FastQC (version 0.11.9).
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bioRxiv - Biochemistry 2023Quote: ... for quality metrics before sequencing by 150 bp paired end reads on the iSeq100 (Illumina).
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bioRxiv - Biochemistry 2023Quote: ... and sequenced on the NextSeq550 (Illumina). Reads were sorted by the barcodes assigned to each library and adapter sequences were removed using Trimmomatic (59) ...
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bioRxiv - Bioengineering 2023Quote: ... RNAseq library was prepared (Illumina stranded mRNA prep) and performed on Nextseq 2000 P3 – 200 cycles (up to 1.1 billion reads ...
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bioRxiv - Cancer Biology 2023Quote: ... to generate RNA libraries following the manufacturer’s recommendations (Illumina, San Diego, CA, USA). 2x100bp paired-end reads were sequenced on the NovaSeq 6000 (Illumina ...
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Epigenetic deregulation of IFN and WNT pathways in AT2 cells impairs alveolar regeneration (in COPD)bioRxiv - Cell Biology 2023Quote: ... Equimolar amounts of all four libraries were pooled and sequenced on two lanes of a HiSeq2500 (Illumina, San Diego, California, US) machine using NGX Bio service (San Francisco) ...
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bioRxiv - Cell Biology 2023Quote: ... the constructed libraries were sequenced on NovaSeq 6000 (Illumina) platform.
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bioRxiv - Cell Biology 2023Quote: ... Sequencing was performed using the NovaSeq 6000 (Illumina) as per the standard 10x configuration.
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bioRxiv - Cancer Biology 2023Quote: ... ribosomal RNA depleted strand-specific RNA libraries with the TruSeq Stranded Total RNA LT sample preparation kit with Ribo-Zero Gold (Illumina, cat# RS-122-2301 and #RS-122-2302), and transcriptome capture based libraries with the TruSeq RNA Access Library Prep Kit (Illumina ...
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bioRxiv - Cancer Biology 2023Quote: ... Library preparation was performed with the Illumina TruSeq Stranded Total RNA Library Prep Gold (Illumina, #20020598). TruSeq RNA UD Indexes (Illumina ...
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bioRxiv - Cell Biology 2023Quote: ... and sequenced on HiSeq (Illumina, 150 cycle) using custom primers ...
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bioRxiv - Neuroscience 2023Quote: ... 500 ng of RNA was used as an input and libraries were prepared using the TruSeq Stranded mRNA library preparation kit from Illumina. The samples were sequenced on the NovaSeq 600 platform on the NovaSeq S4 300 cycle flowcell to generate 150 bp paired-end reads ...
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bioRxiv - Neuroscience 2023Quote: Data were demultiplexed and fastq files were generated using bcl2fastq (v2.20.0.422, Illumina) with parameter “--barcode-mismatches” set to 1 ...
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bioRxiv - Neuroscience 2023Quote: ... Samples were then sequenced on the NovaSeq 6000 (Illumina) instrument with single-end ...
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bioRxiv - Neuroscience 2023Quote: ... The pellet was resuspended in 50 μl of transposition mixture (25 μl of 2× Illumina Tagment DNA buffer ...
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bioRxiv - Neuroscience 2023Quote: ... An initial PCR amplification was performed on the tagmented DNA using Nextera indexing primers (Illumina). Real-time (RT)-qPCR was run with a fraction of the tagmented DNA to determine the number of additional PCR cycles needed ...
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bioRxiv - Genomics 2023Quote: ... All libraries were sequenced on HiSeqTM 2500 (Illumina®) as 75 bp paired-end reads.
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bioRxiv - Genomics 2023Quote: ... Bulk RNA-seq libraries were generated as previously described (Andersson et al., 2014) and sequenced on HiSeqTM 2500 (Illumina®) as 100bp paired-end reads ...
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bioRxiv - Microbiology 2023Quote: ... was predominantly carried out using a 2x 150bp (paired end) sequencing protocol for the Illumina the NovaSeq 6000 Sequencing System (Illumina, San Diego, CA, USA) according to the manufacturer’s manual ...
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bioRxiv - Neuroscience 2023Quote: ... followed by amplification and sequencing of the cDNA libraries on an Illumina HiSeq4000 platform (Illumina, San Diego, CA).
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bioRxiv - Neuroscience 2023Quote: ... Female and male samples after MR1 were sequenced (single-end reads, 1×75 nt) with Illumina NextSeq 500 (Illumina, San Diego, USA). Female samples after MR2 were sequenced (single-end reads ...
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bioRxiv - Neuroscience 2023Quote: ... All samples proceeded through Nextera XT DNA Library Preparation (Illumina FC-131-1096) using either Nextera XT Index Kit V2 Set A-D (FC-131-2001,2002,2003,2004 ...
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bioRxiv - Neuroscience 2023Quote: ... and the University of California Los Angeles) on three genotyping platforms (Illumina Human660W, Illumina OmniExpress 2.5, and Illumina Global Screening Array) in 10 total batches (Supplementary Figure 1) ...
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bioRxiv - Microbiology 2023Quote: ... Thereafter cDNA libraries were made using an Illumina TruSeq Stranded total Library Prep Kit (Illumina, San Diego, US) in combination with TruSeq RNA UD Indexes (Illumina ...
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bioRxiv - Genomics 2023Quote: ... Micro-C libraries (at least 3 per each biological replicate) that passed QC criteria were pooled and paired-end sequenced on a NovaSeq6000 platform (Illumina) to >600 million read pairs per replicate ...
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bioRxiv - Genomics 2023Quote: ... barcoded cDNA libraries were generated using the TruSeq RNA library Kit (Illumina) and were paired-end sequenced to >50 million read pairs on a HiSeq4000 platform (Illumina) ...
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bioRxiv - Genomics 2023Quote: ... Pooled male and pooled female libraries were constructed using a Truseq nano kit (Illumina, ref. FC-121-4001) following the manufacturer’s instructions ...
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bioRxiv - Genomics 2023Quote: ... The library was sequenced using a read length of 250 bp in paired-end mode (HiSeq 3000, Illumina, California, USA). Hi-C library generation for chromosome assembly was carried out according to a protocol adapted from Rao et al ...
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bioRxiv - Microbiology 2023Quote: ... Ribodepletion RNA library and sequencing was performed at the Oxford Genomics Centre using a NovaSeq6000 sequencing system (Illumina). Three biological samples per condition were sequenced ...
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bioRxiv - Genomics 2023Quote: ... Supplementary Table 2) was subjected to whole-genome sequencing by Illumina HiSeq ...
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bioRxiv - Genomics 2023Quote: ... Ribosomal RNA was depleted from 500 ng total RNA using the Illumina Ribo-Zero Plus rRNA Depletion Kit (Illumina, Cat. # 20037135). RNA was converted to cDNA ...
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bioRxiv - Genomics 2023Quote: ... A TruSeq stranded total RNA-seq library with one round of Ribo-Zero Gold kit (Illumina) was prepared from one pooled library consisting of RNA samples from eight tissues (heart ...
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bioRxiv - Genomics 2023Quote: ... We used 15 mins incubation on ice in the nuclei preparation step and the Tn5 reaction was performed in 50 μl of custom transposition buffer (10 mM Tris pH 8, 5 mM MgCl2 and 10% dimethylformamide) with 2.5 μl Tn5 transposase (Illumina, 20034197) at 37°C while mixing at 1000 rpm for 30 mins ...
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bioRxiv - Genomics 2023Quote: ... sc-end5-dT and sc-ATAC-seq libraries were sequenced on HiSeqTM 2500 (Illumina®) as 75bp and 100bp paired-end reads respectively.
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bioRxiv - Genomics 2023Quote: Bulk CAGE libraries were generated by the nAnT-iCAGE (Murata et al., 2014) method as previously described and sequenced on HiSeqTM 2500 (Illumina®) as 50bp single-end reads ...
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bioRxiv - Genomics 2023Quote: ... All libraries were pooled and subjected to paired-end 75 bp sequencing (paired- end 76 nt reads with the first 1 nt of Read 1 and the last 1 nt of Read 2 trimmed) using the NextSeq500 system (Illumina, CA, USA). For each library ...
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bioRxiv - Genomics 2023Quote: ... and sequenced on a Novaseq6000 instrument (Illumina) to an average depth of 25,000 read pairs per nucleus by The Jackson Laboratory Genome Technologies core service.
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bioRxiv - Microbiology 2023Quote: ... Libraries were prepared using the TruSeq RNA Library Prep Kit v2 (Illumina). Mass sequencing was performed using NextSeq 550 platform with a single-end protocol ...