Labshake search
Citations for Illumina :
8201 - 8250 of 10000+ citations since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Microbiology 2023Quote: ... using a 600 (2×300 base pair) cycle reagent kit (Illumina Inc, San Diego, CA).
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bioRxiv - Microbiology 2023Quote: ... and sequenced on either a MiSeq or NextSeq 550 instrument (Illumina) using a 300 or 150 bp paired-end protocol ...
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bioRxiv - Microbiology 2023Quote: ... 16S rRNA gene amplicon libraries targeting the V1-V3 or V4 region were constructed using a dual-indexing method and sequenced on a MiSeq with a 2×300 bp run format (Illumina, San Diego, CA). Reagent-only negative controls were carried through the DNA extraction and sequencing process.
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bioRxiv - Molecular Biology 2023Quote: ... Libraries were pooled at equimolar concentrations and run on the MiSeq Micro V2 300 cycle kit (Illumina, PE150) using 5 pM with 20% PhiX ...
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bioRxiv - Molecular Biology 2023Quote: ... DNA libraries were prepared from 1µg DNA using the NEBNext Ultra II DNA Library Prep Kit (Illumina) following manufacturer’s instructions and sequencing was performed by Novogene (Cambridge ...
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bioRxiv - Microbiology 2023Quote: ... and IDT® for Illumina® DNA/RNA UD Indexes Set D (Illumina #20042667). Concentrations of 1.8 × AMPure XP magnetic bead purified libraries were measured using Qubit™ 1× dsDNA High Sensitivity Assay Kit (Thermo #Q33231 ...
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bioRxiv - Microbiology 2023Quote: ... Fastq sequence files were generated using bcl2fastq version 2.20 (Illumina). The samples went through two steps of quality assessment ...
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bioRxiv - Microbiology 2023Quote: Metagenomic libraries were prepared from the double-stranded cDNA using the Illumina DNA Prep with Enrichment Kit (Illumina #20025524) and IDT® for Illumina® DNA/RNA UD Indexes Set D (Illumina #20042667) ...
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bioRxiv - Microbiology 2023Quote: ... Reverse and forward amplicon PCR primers recommended by Illumina were used (16s Amplicon PCR Forward Primer= TCGTCGGCAGCGTCAGATGTGTATAAGAGACAGCCTACGGGNGGCWGCAG ...
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bioRxiv - Microbiology 2023Quote: ... 2×125 bp paired-end library preparation and WGS analysis on a HiSeq 2500 platform (Illumina) was performed by BaseClear (Leiden ...
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bioRxiv - Microbiology 2023Quote: ... and Respiratory Virus Oligo Panel v2 (Illumina #20044311). Tagmented cDNAs were amplified to add indexes and adapters ...
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bioRxiv - Microbiology 2023Quote: ... DNA libraries were prepared using the Nextera Library Preparation Biochemistry (Illumina). Shotgun sequencing was performed with the Illumina platforms Nextseq 500 (170 bp + 140 bp ...
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bioRxiv - Molecular Biology 2023Quote: ... Fragmented genomic DNA libraries were produced from 10 ng of each sample treated with 1.5 µl of Nextera XT tagmentase (Illumina) at 37°C for 45 min with gentle shaking ...
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bioRxiv - Molecular Biology 2023Quote: ... followed by sequencing on the HiSeq 4000 (Illumina) platform in PE150 mode ...
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bioRxiv - Microbiology 2023Quote: Short and long reads from Illumina and ONT sequencing ...
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bioRxiv - Microbiology 2023Quote: ... Libraries were then multiplexed and sequenced on the MiSeq paired-end Illumina platform (Illumina, San Diego, CA, USA).
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bioRxiv - Microbiology 2023Quote: Libraries were prepared for metagenomic sequencing using the Nextera DNA Flex Library Prep kit (Illumina 20018705). Samples collected at four “key” timepoints (days -28 ...
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bioRxiv - Microbiology 2023Quote: ... Sequencing was performed at the DOE Joint Genome Institute (JGI) on a NovaSeq (Illumina) resulting in paired-end reads of 151 base pairs in length ...
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bioRxiv - Microbiology 2023Quote: ... Ribosomal RNA depletion was performed with Ribo-Zero Plus rRNA Removal Kit (Illumina Inc., CA, USA). Samples were primed and fragmented based on the recommendation of the manufacturer ...
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bioRxiv - Microbiology 2023Quote: ... and preparing libraries for metagenomic sequencing using the Nextera DNA Flex Library Prep kit (Illumina 20018705). We re-calculated the number of fixed differences between each pair of populations with median sequencing coverage >5 after including these re-sequenced samples in our dataset ...
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bioRxiv - Microbiology 2023Quote: ... Samples were sent to Macrogen (South Korea) for sequencing (Illumina Miseq with TruSeq libraries and ribosomal RNA depletion ...
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bioRxiv - Microbiology 2023Quote: Hybridization capture was performed with an Illumina RNA Prep with Enrichment (L) Tagmentation kit (Illumina #20040537), IDT for Illumina DNA/RNA UD Indexes (Illumina #20027213) ...
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bioRxiv - Microbiology 2023Quote: ... IDT for Illumina DNA/RNA UD Indexes (Illumina #20027213), and Respiratory Virus Oligo Panel v2 (Illumina #20044311) ...
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bioRxiv - Molecular Biology 2023Quote: ... The resulting libraries were sequenced using the NextSeq 550 platform (Illumina) with single end 1x 86 bp setting ...
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bioRxiv - Microbiology 2023Quote: ... Sequencing libraries were prepared from the purified PCR product using the Nextera XT DNA Library kit (Illumina). After library preparation ...
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bioRxiv - Microbiology 2023Quote: De Novo Assembly from Illumina reads was performed using MEGAHIT (Li et al ...
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bioRxiv - Microbiology 2023Quote: ... Prepared libraries were sequenced to an expected sequencing depth of 100,000 paired-end reads per sample on an Illumina MiSeq instrument (Illumina Inc, San Diego, CA) using a 600 (2×300 base pair ...
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bioRxiv - Microbiology 2023Quote: ... and sequenced at Novogene on 1 HiSeq PE 150 lane (6 bp, i7 single index, Illumina). The output of the lane was 375 million reads.
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Understanding Campylobacter coli isolates from the Vietnamese meat production network; a pilot studybioRxiv - Microbiology 2023Quote: ... Libraries were sequenced on a MiSeq (Illumina, USA) with 2 x 150 bp reagent kit v2 ...
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bioRxiv - Molecular Biology 2023Quote: ... RNA libraries for all samples were produced using Stranded Total RNA Prep with Ribo-Zero Plus (Illumina). All samples were sequenced on an Illumina Novaseq 6000 Sequencing system ...
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bioRxiv - Molecular Biology 2023Quote: RNA libraries for all samples were produced using Stranded Total RNA Prep with Ribo-Zero Plus (Illumina). All samples were sequenced on an Illumina Novaseq 6000 Sequencing system with an average of about 74million 100nucleotides long paired-end read pairs ...
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bioRxiv - Molecular Biology 2023Quote: ... and sequenced on a NextSeq 550 sequencer (Illumina, San Diego, CA, USA), generating 150bp paired-end data ...
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bioRxiv - Molecular Biology 2023Quote: ... Sequencing libraries were visualized using an Agilent 2200 Tapestation and sequencing was done using the Novaseq 6000 SP300 cartridge (Illumina).
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bioRxiv - Microbiology 2023Quote: ... and NexteraXT sequencing libraries were prepared following the manufacturer’s protocols (Illumina, USA) and sequenced using the Illumina NextSeq500 platform.
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bioRxiv - Microbiology 2023Quote: ... The Seqwell plexWell LP384 Library Preparation Kit and Native Barcoding Kit 24 V14 (SQK-NBD112.24) were used for barcode-indexed whole genome sequencing with Illumina NovaSeq system (Illumina San Diego, USA) and Oxford Nanopore MinIoN Mk1C device (Oxford Nanopore Technologies ...
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bioRxiv - Microbiology 2023Quote: We sequenced strains with genome modifications using either short-read (Illumina) or long-read (Nanopore ...
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bioRxiv - Molecular Biology 2023Quote: ... Paired-end 150Lbp sequencing was performed on a NEXTSeq550 (Illumina) platform and each sample was targeted for 10 million reads ...
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bioRxiv - Molecular Biology 2023Quote: ... Purified libraries were controlled by capillary electrophoresis (LabChip - Perkin) and quantitated by qPCR (KAPA Library Quantification Kits Illumina Platforms - Roche). Pooled libraries (12 pM ...
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bioRxiv - Molecular Biology 2023Quote: ... Index i7 (6 pb barcode) was read with primer HP8 (Illumina).
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bioRxiv - Molecular Biology 2023Quote: ... Read 1 was read with primer HP6 (Illumina) with 3 dark cycles (first 3 bases of read 1 were not read) ...
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bioRxiv - Microbiology 2023Quote: ... Next generation sequencing was performed using NextSeq (Illumina, USA), and the obtained data were analyzed using MAGeCK software ...
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bioRxiv - Microbiology 2023Quote: ... Library preparation was performed according to Illumina’s TruSeq DNA Sample Preparation Guide (Illumina, San Diego, CA). Single-end sequence reads of approximately 50 bp were obtained ...
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bioRxiv - Microbiology 2023Quote: All datasets in this study consist of whole genome sequences (Illumina) of Mtb strains collected in countries with a generalized HIV epidemic.
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bioRxiv - Microbiology 2023Quote: ... Commercial library preparation used the tagmentation DNA Prep Kit (Illumina, USA). For in-house short-read sequencing library preparation ...
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bioRxiv - Microbiology 2023Quote: ... Demultiplexing was performed automatically by the CASAVA pipeline v1.8.0 (Illumina, San Diego, CA).
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bioRxiv - Molecular Biology 2023Quote: ... Sequencing was performed on NextSeq550 sequencer (Illumina) using NextSeq 500/550 High Output Kit v2.5 (75 Cycles PE ...
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bioRxiv - Molecular Biology 2023Quote: ... 2 or 4 nM concentration and run on NextSeq 550 sequencer (Illumina) with NextSeq 500/550 High Output v2.5 (75 cycles PE ...
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bioRxiv - Molecular Biology 2023Quote: ... raw reads (fastq) per experiment were downloaded from Basespace servers (Illumina) using basespace-cli and concatenated per sample using base bash ...
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bioRxiv - Molecular Biology 2023Quote: ... Read quality was assessed using Basespace (Illumina) and FastQC56 software ...
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bioRxiv - Molecular Biology 2023Quote: ... with NextSeq 500/550 High Output v2.5 (75 cycles PE) kit (Illumina).