Labshake search
Citations for PacBio :
1101 - 1150 of 1293 citations since 2020
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Genomics 2021Quote: ... the IsoSeq2 pipeline (PacBio) was used to process the ISO-seq data generated in this study (Supplementary Table 2) ...
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bioRxiv - Genomics 2021Quote: ... Libraries were prepared using the SMRTbell Template Prep Kit 1.0 (PacBio), loaded using either magbeads or diffusion ...
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bioRxiv - Cell Biology 2021Quote: ... and 5µg of uHMW DNA was sheared using a 26G blunt end needle (Pacbio protocol PN 101-181-000, Version 05). A large-insert (23 kb average ...
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bioRxiv - Genomics 2021Quote: ... we generated high-quality transcripts from Pacific Biosciences (PacBio) long RNA reads using the isoseq3 pipeline v3.4.0 ([CSL STYLE ERROR ...
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bioRxiv - Genomics 2021Quote: ... Scomber colias (Specimen caught in 2020 and used to do the Pacbio HiFi genome assembly).
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bioRxiv - Genomics 2021Quote: ... obtained from the Illumina PE dataset (equal to that obtained from the PacBio HiFi long reads assembly). From the center to the outmost features ...
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bioRxiv - Genomics 2021Quote: ... was built at chromosome level with multiple technologies (including 46x PacBio data ...
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bioRxiv - Genomics 2021Quote: ... Additional benchmarking on three high-quality canid genomes further revealed robustness to both assembly used (breed-specific genome versus CanFam v3.1) and sequencing technology (PacBio vs ONT), although PacBio data appears to over-estimate genome size more than ONT data (Figure S1).
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bioRxiv - Genomics 2021Quote: ... Pacific Biosciences (PacBio) HiFi data were generated by the DNA sequencing core facility at the University of Wisconsin ...
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bioRxiv - Genomics 2021Quote: ... For Pacific Biosciences (PacBio) sequencing ...
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bioRxiv - Genomics 2021Quote: ... 10 μg of uHMW DNA was sheared using a 26 G blunt end needle (Pacbio protocol PN 101-181-000 Version 05). A large-insert Pacbio library (CLR ...
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bioRxiv - Genomics 2021Quote: ... The library was bound to polymerase using the Sequel II Binding Kit 2.0 (PacBio) and loaded onto PacBio Sequel II ...
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bioRxiv - Genomics 2021Quote: The manufacturer recommended protocol was used to generate a PacBio SMRTbell library (~20kb) for PacBio Sequel using SMRTbell Express Template Prep Kit 2.0 (PacBio, Menlo Park, CA, USA). The library was bound to polymerase using the Sequel II Binding Kit 2.0 (PacBio ...
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bioRxiv - Genomics 2021Quote: ... an SMRT-bell template library was prepared following the manufacturer’s protocol and sequenced using the Pacific Biosciences (PacBio) Sequel platform (P6C4 chemistry ...
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bioRxiv - Genomics 2021Quote: The STK005 (PacBio RSII reads) were assembled using RS_HGAP3 program with parameters ...
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bioRxiv - Genomics 2021Quote: DNA motifs and degree of modification were generated using InterPulse Duration (IPD) Ratios analysed with RS_Modification_and_Motif_Analysis from PacBio as in (Flusberg et al ...
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bioRxiv - Genomics 2021Quote: ... PacBio SMRTbell libraries (∼20kb) were constructed using the SMRTbell Express Template Prep Kit 2.0 (PacBio, Menlo Park, CA, USA), following the manufacturer’s protocol ...
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bioRxiv - Genomics 2021Quote: ... Libraries were bound to polymerase using the Sequel II Binding Kit 2.0 (PacBio) and loaded onto a PacBio Sequel II at Dovetail Genomics ...
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bioRxiv - Genomics 2021Quote: We polished the CLR-based assemblies using the Arrow algorithm in the gcpp tool from PacBio’s SMRT Link v8.0 stack ...
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bioRxiv - Genomics 2021Quote: ... coluzzii Ngousso strain (AcolN1) from PacBio reads was also used ...
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bioRxiv - Microbiology 2021Quote: ... coli isolates were selected for long read sequencing using Sequel II System (PacBio Biosciences Inc.) or MinION (Oxford Nanopore technology) ...
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bioRxiv - Microbiology 2020Quote: ... aeruginosa isolates were extracted and sequenced by Illumina HiSeq X platform and genome of Isolate 1(Iso1) was sequenced by PacBio Sequel II platform ...
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bioRxiv - Plant Biology 2020Quote: ... we sequenced the genome of a male tree using PacBio Sequel II (PacBio, USA) and assembled the genome following the same pipeline as that for P ...
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bioRxiv - Genomics 2020Quote: About 25.3 Gb of Minghui 63 HiFi reads from PacBio Sequel II were downloaded from the NCBI Sequence Read Archive database (SRX6957825) ...
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bioRxiv - Genomics 2020Quote: ... sequencing one cell with CLR version 2 chemistry (PacBio, Menlo Park, CA, USA).
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bioRxiv - Genomics 2020Quote: ... we generated diploid genome assemblies for 14 individuals from available Pacific Biosciences (PacBio) WGS data and phased SNVs (Table S2).32 Where phased SNVs were not available (samples HG02059 ...
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bioRxiv - Microbiology 2020Quote: Metagenomic datasets have been submitted to NCBI SRA and are available under BioProject accession number PRJNA674982 (Illumina reads: MedWinter-FEB2019-I [SAMN16686071]; Nanopore reads: MedWinter-FEB2019-NP [SAMN16686072]; and PacBio CCS reads ...
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bioRxiv - Evolutionary Biology 2020Quote: ... USA) which were subsequently utilized to construct a library separately through the SMRTbellTM Template Prep Kit 1.0 (PacBio, USA). Libraries were sequenced by the PacBio Sequel (PacBio ...
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bioRxiv - Evolutionary Biology 2020Quote: ... Libraries were sequenced by the PacBio Sequel (PacBio, USA).
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bioRxiv - Evolutionary Biology 2020Quote: ... and long-read (PacBio) genome sequence data were acquired for A ...
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bioRxiv - Genomics 2020Quote: ... all the assemblies were processed by PacBio’s polishing tool ...
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bioRxiv - Molecular Biology 2020Quote: ... the DNA with UMIs are amplified for sequencing in appropriated platforms (Illumina, Nanopore or PacBio). In the data analysis step ...
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bioRxiv - Genomics 2020Quote: ... Sequencing libraries were constructed using the protocol “Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 2.0” from PacBio. SMRTbells were size selected using 0.75% agarose 1-18kb protocol on SageELF (Sage Science ...
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bioRxiv - Genomics 2020Quote: ... Differences in RS II and Sequel II libraries necessitated the use of similar pipelines (i.e., PacBio base modification pipeline) on different software releases (RS II ...
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bioRxiv - Genomics 2020Quote: ... We polished the primary assembly using the genomic consensus algorithm arrow within Anaconda2 (v.5.0.1) (PacBio), after aligning with Minimap2 (v2.3 ...
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bioRxiv - Genomics 2020Quote: ... Hybrid assemblies were also generated with combined read data from Sequel II and one other library (ONT RAPID, ONT LIG, PacBio RS II). The Sequel II + ONT LIG assembly was iteratively polished for five rounds using Pilon using Illumina reads ...
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bioRxiv - Genomics 2020Quote: ... where the two datasets are comparable (1.6 fold more reads in the PacBio dataset). The PacBio dataset for the thorny skate was one of the very first VGP datasets produced ...
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bioRxiv - Genomics 2020Quote: The mitoVGP pipeline was designed to simultaneously take advantage of the availability of long reads (especially PacBio) and short reads (usually 10x linked reads ...
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bioRxiv - Genomics 2020Quote: ... The RNA extracted from multiple organs were mixed to prepare an Iso-Seq library in accordance with the manufacturer’s protocol (PacBio). The library was sequenced by a Sequel system with two SMRT cells ...
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bioRxiv - Genomics 2020Quote: ... 2.2.1 implemented in SMRT Link v.5.0 (PacBio). Paired-end (PE ...
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bioRxiv - Genomics 2020Quote: ... Sequence libraries were prepared using the SMRTbell Express Template Prep Kit 2.0 (PacBio, Menlo Park, CA, USA). The size selection of the library was performed by BluePippin (Sage Science ...
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bioRxiv - Genomics 2020Quote: ... The obtained reads were clustered using the Iso-Seq 3 pipeline implemented in SMRT Link ver.8.0 (PacBio) and then mapped onto the assembled genome with Minimap2 (Li et al ...
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bioRxiv - Genomics 2020Quote: ... SVs were identified by using the pbsv module in SMRT Link 6.0 (PacBio).
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bioRxiv - Genomics 2020Quote: ... The library was then sequenced using a Sequel system (PacBio) with 28 SMRT cells ...
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bioRxiv - Genomics 2020Quote: ... transcriptome-based prediction methods combined information from PacBio Iso-seq and other available P ...
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bioRxiv - Genomics 2020Quote: ... and sequenced on a PacBio Sequel system (PacBio). The long reads from the Sequel system were assembled ...
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bioRxiv - Genomics 2020Quote: ... an SMRT sequence library was constructed with an SMRTbell Express Template Prep Kit (PacBio, Menlo Park, CA, USA) and sequenced on a PacBio Sequel system (PacBio) ...
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bioRxiv - Genomics 2020Quote: ... a combination of two sequencing experiments was analyzed (PacBio_CCS_10kb and PacBio_CCS_15kb). The mean coverage was ~29x ...
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bioRxiv - Genomics 2020Quote: ... a combination of two sequencing experiments was analyzed (PacBio_CCS_10kb and PacBio_CCS_15kb). The mean coverage was ~29x ...
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bioRxiv - Genomics 2020Quote: ... Long-read sequencing data from Pacific Biosciences (PacBio) single molecule ...