Labshake search
Citations for PacBio :
1001 - 1050 of 1293 citations since 2020
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Microbiology 2021Quote: ... and ERZ3518335 (ERS6682837 PacBio reads) respectively.
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bioRxiv - Microbiology 2021Quote: ... DNA extraction and 16S rRNA full-length sequencing (PacBio) were performed as reported previously [17] ...
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bioRxiv - Microbiology 2021Quote: DNA modification detection and motif analysis were performed using the PacBio SMRT Link software (PacBio, Menlo Park, CA, USA). Briefly ...
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bioRxiv - Microbiology 2021Quote: ... SMRTbell template libraries were prepared using a Sequel Binding Kit 3.0 (PacBio, Menlo Park, CA, USA), and sequenced on a Sequel instrument using a v3 or v4 sequencing primer ...
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bioRxiv - Microbiology 2021Quote: ... Sheared DNA was treated with exonuclease to remove single-stranded ends and DNA damage repair mix followed by end repair and ligation of barcoded blunt adapters using SMRTbell Template Prep Kit 2.0 (PacBio, Menlo Park, CA, USA). Libraries were purified with AMPure PB beads (Beckman Coulter ...
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bioRxiv - Microbiology 2021Quote: ... or in-house at the University of Florence (the stationary phase samples and dnf mutant nodules and the matched wild-type A17 sample) using Pacific Biosciences (PacBio) sequencing technology (Eid et al. ...
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bioRxiv - Microbiology 2021Quote: ... SMRTbell template libraries were prepared using a Sequel II Binding Kit 2.0 (PacBio, Menlo Park, CA, USA), and then sequenced on a Sequel II instrument using the tbd-sample dependent sequencing primer ...
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bioRxiv - Genomics 2021Quote: ... then polished with PacBio 15/20 kb CCS reads (ftp://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/AshkenazimTrio/HG002_NA24385_son/PacBio_CCS_15kb_20kb_chemistry2/reads/), followed by scaffolding with HiC data (https://github.com/human-pangenomics/HG002_Data_Freeze_v1.0) ...
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bioRxiv - Microbiology 2021Quote: ... SMRTbell DNA template libraries were prepared according to the manufacturer’s specification (PacBio, Menlo Park, USA). DNA sequencing was then performed on Pacific Biosciences RSII sequencer (PacBio ...
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bioRxiv - Microbiology 2021Quote: ... library was prepared using SMRTbell template prep kit (PacBio, USA) according to manufacturer instructions ...
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bioRxiv - Microbiology 2021Quote: ... MetaQUAST was used to compare assemblies from the three sequencing methods (Illumina-WGA, PacBio-WGA, and PacBio).
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bioRxiv - Microbiology 2021Quote: ... Both the unamplified and WGA samples were sequenced by PacBio Sequel2.
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bioRxiv - Microbiology 2021Quote: ... and PacBio (PacBio RS II). The sequencing reads are available on the Short Read Archive (SRA ...
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bioRxiv - Plant Biology 2021Quote: ... Purification was achieved using a 0.8× ratio of AMPure PB Beads (PacBio, USA). The final sequencing library was validated using a 2100 Bioanalyzer High-sensitivity DNA chip (Agilent Technologies ...
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bioRxiv - Plant Biology 2021Quote: ... A Template Prep Kit (PacBio, USA) was used to remove failed ligation products ...
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bioRxiv - Microbiology 2021Quote: ... The genomic DNA was sheared to approximately 8-14 kb long fragments and a library was generated with the SMRTbell Express Template Prep Kit 2.0 (PacBio) without size selection ...
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bioRxiv - Microbiology 2021Quote: ... PS-02 and OB were assembled with the ‘Microbial Assembly’ pipeline (SMRT Link Software, PacBio) with a seed coverage of 20 and 15 ...
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bioRxiv - Molecular Biology 2021Quote: Long reads produced by PacBio RSII were assembled with Canu 1.4 (51 ...
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bioRxiv - Genomics 2021Quote: ... with an average read length of 15.8 kb (PacBio, Menlo Park, CA, USA); (2 ...
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bioRxiv - Microbiology 2021Quote: ... The wild-type strains MO10 and A1552 were sequenced by PacBio Sequel and Illumina MiSeq at the Génome Québec Innovation Center (Centre Hospitalier Universitaire Sainte-Justine ...
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bioRxiv - Microbiology 2021Quote: ... The PacBio shotgun library was constructed following the manufacturer’s multiplexed bacterial protocol for the SMRTbell Express TPK 2.0 kit (PacBio). Briefly ...
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bioRxiv - Evolutionary Biology 2021Quote: Most steps were carried out with tools developed by PacBio® (https://github.com/PacificBiosciences/pbbioconda) ...
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bioRxiv - Microbiology 2021Quote: ... The genome of strain CS1 was sequenced by PacBio platform (PacBio ...
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bioRxiv - Microbiology 2021Quote: ... SMRTbell libraries were prepared using the SMRTbell Express Template Prep Kit 2.0 (PacBio kit). Long read data were assembled by canu 2.1.1(44) ...
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bioRxiv - Genomics 2021Quote: ... and the SMRTbell Express Template Prep Kit 2.0 (PacBio, Menlo Park, CA, USA), respectively ...
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bioRxiv - Genomics 2021Quote: ... Long-read sequence data were obtained using the Sequel system (PacBio), and primary contigs and alternate contigs ...
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bioRxiv - Neuroscience 2021Quote: ... We also conducted BLAST searches for EFNB3 in the current assemblies of chicken (Pacbio-based GRCg6a) and quail (hybrid Coturnix japonica 2.1) ...
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bioRxiv - Neuroscience 2021Quote: ... As an EFNB3 was not present in the current Anna’s hummingbird PacBio assembly (the only such case for a non-Galliformes avian PacBio assembly), we also BLAST searched the pre-assembled reads (p- reads ...
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bioRxiv - Evolutionary Biology 2021Quote: ... using the Magbead OCPW v1 protocol (PacBio).
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bioRxiv - Evolutionary Biology 2021Quote: ... using two RSII SMRTcells v3 and P6-C4 chemistry (PacBio, Earlham Institute provider). Each cell was sequenced using a 240-minute movie ...
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bioRxiv - Evolutionary Biology 2021Quote: ... and SMRTbell library construction was carried out using a Template Prep Kit 1.0 (PacBio). The library was then size selected to >7kb using the BluePippin system (Sage Science) ...
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bioRxiv - Plant Biology 2021Quote: ... The Arrow program implemented in SMRT-link-5.1 (PacBio) was used to correct the draft assembly with long reads and the corrected assembly was subjected to a second-round error correct using Pilon50 (v1.22 ...
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bioRxiv - Plant Biology 2021Quote: ... The sheared DNA was used to construct the PacBio SMRT library following the standard SMRT bell construction protocol (PacBio). Hi-C and Chicago libraries were prepared following the protocols implemented by Dovetail Genomics and sequenced on an Illumina HiSeq 4000 platform.
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bioRxiv - Cell Biology 2021Quote: ... among which >93% of the cells also had STADT barcodes recovered from PacBio Sequel ...
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bioRxiv - Cell Biology 2021Quote: ... Consensus sequences were generated for both positive and negative strands by using the official CCS program 59 from PacBio, with a minimum of 3 passes/subreads per strand ...
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bioRxiv - Immunology 2021Quote: The correspondence of RBD gene sequence in mutant library and N26 barcode was obtained by PacBio sequencing ...
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bioRxiv - Microbiology 2021Quote: ... the Illumina sequencing data were used as short reads files and the Nanopore (Pacbio) sequencing data were used as long read files ...
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bioRxiv - Developmental Biology 2021Quote: ... Both samples were sequenced on the PacBio Sequel at the Genomics Core at KU Leuven (Belgium) following the protocol recommended by PacBio. Only cDNAs containing polyA-tails were selected ...
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bioRxiv - Microbiology 2021Quote: ... or Pacific Biosciences (PacBio, Menlo Park, CA) (B1.3 ...
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bioRxiv - Microbiology 2021Quote: Genomes were assembled from PacBio reads using the software Flye ...
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bioRxiv - Microbiology 2021Quote: ... The SMRT bell was produced using the SMRTbell Express Template Prep Kit 2.0 (PacBio). The input amplicon pool concentration was measured using a Qubit Fluorometer dsDNA High Sensitivity assay (Life Technologies) ...
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bioRxiv - Microbiology 2021Quote: ... PCR chemicals and conditions (27 cycles) were performed as suggested by Pacific Biosciences (PacBio, 2020). PCR products were visualized on an 1 % (w/v ...
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bioRxiv - Microbiology 2021Quote: ... A ready to sequence SMRT bell-Polymerase Complex was created using the Sequel II Binding Kit 2.1 and Internal Control 1.0 (PacBio) according to the manufacturer instruction ...
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bioRxiv - Microbiology 2021Quote: ... PCR products were purified using AMPure®PB beads (PacBio), following manufacturer’s guidelines ...
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bioRxiv - Microbiology 2021Quote: ... using the Sequel II Sequencing Kit 2.0 (PacBio). Sequencing data quality were checked ...
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bioRxiv - Microbiology 2021Quote: ... DNA sequencing was then performed on Pacific Biosciences RSII sequencer (PacBio, Menlo Park, USA).
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bioRxiv - Plant Biology 2021Quote: ... candida Ac2V genomic DNA was sequenced by PacBio RSII platform (4 SMRTcells ...
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Structural variant selection for high-altitude adaptation using single-molecule long-read sequencingbioRxiv - Genomics 2021Quote: ... The SVs derived from PacBio and ONT sequencing platforms were compared according to the following criterion ...
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Structural variant selection for high-altitude adaptation using single-molecule long-read sequencingbioRxiv - Genomics 2021Quote: ... CCS reads were generated using SMRTLink (v6.0) software from PacBio.
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Structural variant selection for high-altitude adaptation using single-molecule long-read sequencingbioRxiv - Genomics 2021Quote: ... SMRTbell libraries were constructed using the SMRTbell Template Prep Kit v.1.0 (100-259-100, PacBio) and then sequenced using V3.0 chemistry on the PacBio Sequel system ...