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Citations for PacBio :
951 - 1000 of 1293 citations since 2020
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Evolutionary Biology 2021Quote: ... followed by PacBio SMRTbell library preparation ...
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bioRxiv - Genetics 2021Quote: DNA motifs and degree of modification were generated using InterPulse Duration (IPD) Ratios analyzed with RS_Modification_and_Motif_Analysis from PacBio as in [69 ...
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bioRxiv - Genetics 2021Quote: ... initially by Illumina and later by PacBio sequencing (File S1.3) ...
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bioRxiv - Genetics 2021Quote: ... All mutations identified by PacBio sequencing are provided in Supplemental Table 5.
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bioRxiv - Genomics 2021Quote: A long-read sequence library was prepared using the SMRTbell Express Template Prep Kit 1.0 (PacBio, Menlo Park, CA, USA). The size selection of the library was performed by BluePippin (Sage Science ...
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bioRxiv - Genomics 2021Quote: ... Iso-Seq libraries were created for leaves and buds in accordance with the manufacturer’s protocol (PacBio) and sequenced by a Sequel system with two SMRT cells ...
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bioRxiv - Genomics 2021Quote: ... and the library was then sequenced using the Sequel system (PacBio) with 14 SMRT cells.
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bioRxiv - Genomics 2021Quote: DNA was prepared for long-read sequencing with a Pacific Biosciences (PacBio; Menlo Park ...
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bioRxiv - Genomics 2021Quote: ... The obtained reads were clustered using the Iso-Seq 2 pipeline implemented in SMRT Link ver.5.1.0 (PacBio). The high-quality (hq ...
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bioRxiv - Genomics 2021Quote: ... 2.2.1 implemented in SMRT Link v.5.0 (PacBio). Illumina PE reads were then used for further error correction of the contig sequences by using Pilon 1.2223.
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bioRxiv - Genomics 2021Quote: ... high-quality long reads from PacBio sequencing were selected and assembled using the Falcon assembler v.1.4.2 (Chin et al ...
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bioRxiv - Genomics 2021Quote: ... Purification steps were performed using 0.45X AMPure PB beads (PacBio). A total of 10 μg of DNA was purified then sheared at 40kb using the Megaruptor system (Diagenode) ...
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bioRxiv - Genomics 2021Quote: ... any long-read sequences (e.g., PacBio) were used ...
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bioRxiv - Genomics 2021Quote: ... Using SMRTBell template Prep Kit 1.0 (PacBio), a DNA and END damage repair step was performed on 5 μg of sample ...
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bioRxiv - Evolutionary Biology 2021Quote: ... The library was sequenced on eight SMRT cells on a Sequel platform (Pacbio). The sequencing yielded 63.66 Gbp of data comprised of 4,690,365 subreads with a mean length of 13,573 bp (range ...
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bioRxiv - Evolutionary Biology 2021Quote: ... In the first round we amplified the GFP coding region with primers carrying a “universal” sequence provided by PacBio. We amplified the GFP gene from the plasmid libraries obtained after every round of selection (see Selection of transformed cells using FACS) ...
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bioRxiv - Evolutionary Biology 2021Quote: We sequenced the GFP coding sequence from plasmid libraries isolated after every round of evolution using single molecule real time (SMRT) sequencing(Pacific Biosciences, PacBio).
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bioRxiv - Genomics 2021Quote: PacBio subreads were extracted with the SMRT Link (version 6) software tool from PacBio. The extracted subreads were then corrected ...
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bioRxiv - Genomics 2021Quote: ... we used the following three types of data to scaffold the primary sequence contigs assembled from PacBio reads ...
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bioRxiv - Genomics 2021Quote: ... CCS reads were assembled using the Improved Phased Assembly (IPA) method (PacBio). The IPA assembly tool (https://github.com/PacificBiosciences/pbbioconda/wiki/Improved-Phased-Assembler ...
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bioRxiv - Genomics 2021Quote: Each sequencing platform (e.g., Sanger, Illumina, PacBio, Nanopore) has a distinct error profile (Huang et al ...
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bioRxiv - Genomics 2021Quote: ... CC-4532 and CC-2931 were extracted from PacBio-sequencing-based assemblies ...
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bioRxiv - Genomics 2021Quote: ... and 16 genomes from NCBI (10 of which were sequenced by PacBio). Raw reads of Illumina sequencing were assembled using Skesa v2.4.0 [22].
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bioRxiv - Genomics 2021Quote: ... 16 complete genomes by PacBio and one reference genome GCA_001549955.1 (sequenced by 454 GS-FLX ...
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bioRxiv - Genomics 2021Quote: ... South Korea) on the RSII platform using single molecule real time (SMRT) long read sequencing technology from Pacific Biosciences (PacBio, CA, USA). The sequencing chemistry included the 20Kb SMRTbell template and the polymerase binding kit P6 Version 2 ...
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bioRxiv - Genomics 2021Quote: ... and not overlapped by PacBio call sets ...
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bioRxiv - Genomics 2021Quote: ... and 3) proportion of SVs that were not overlapped by SVs from PacBio assemblies in the same genome (Figure S3D-G) ...
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bioRxiv - Genomics 2021Quote: ... and overlapped by PacBio call sets ...
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bioRxiv - Systems Biology 2021Quote: DNA sequencing was generated at the DOE Joint Genome Institute (JGI) using the Pacific Biosciences (PacBio) sequencing technology ...
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bioRxiv - Evolutionary Biology 2021Quote: ... Genome sequencing was done with Pacific Biosciences (PacBio) technology ...
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bioRxiv - Bioengineering 2021Quote: ... The genomic region containing integrated BiTE sequences amplified by PCR were gel purified and analyzed by long read amplicon sequencing (PacBio SMRT®). The circular consensus reads (∼3 million CCS reads ...
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bioRxiv - Neuroscience 2021Quote: ... The SMRT sequencing was performed on the PacBio Sequel at the Genomics Core at KU Leuven (Belgium) using the Clontech SMARTer PCR cDNA Synthesis Kit (recommended by Pacbio). Multiple parallel PCR reactions were set after the first strand synthesis employing the PrimeSTAR GXL DNA Polymerase kit ...
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bioRxiv - Neuroscience 2021Quote: ... the two gtf files from PACBIO long-reads specific to telencephalon and the NFIN db reference transcripts were merged using the GffCompare tool ...
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bioRxiv - Genomics 2021Quote: We performed long read sequencing using the Pacific Biosciences (PacBio) circular consensus sequencing (CCS ...
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bioRxiv - Genomics 2021Quote: ... CCS reads were generated using CCS software v.3.4.1 from PacBio (https://github.com/PacificBiosciences/ccs ...
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bioRxiv - Plant Biology 2021Quote: ... the quantification of isoforms and genes was performed using StringTie (version 2.0.4) (Pertea et al., 2015) based on the GTF/GFF3 annotation file generated by PacBio sequencing ...
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bioRxiv - Plant Biology 2021Quote: ... we used Salt:Chloroform Wash protocol recommended by PacBio (Shared-Protocol-Guidelines-for-Using-a-Salt-Chloroform-Wash-to- Clean-Up-gDNA.pdf) ...
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bioRxiv - Plant Biology 2021Quote: ... SMRT sequence libraries were constructed with an SMRTbell Express Template Prep Kit (PacBio, Menlo Park, CA, USA) and used for sequencing on a PacBio Sequel system (PacBio) ...
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bioRxiv - Plant Biology 2021Quote: ... and used for sequencing on a PacBio Sequel system (PacBio). Genome sequence data for S ...
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bioRxiv - Plant Biology 2021Quote: ... Potential sequence errors in the contig sequences were corrected twice with the sequence reads by Arrow (PacBio). The corrected contig sequences were aligned back to the reference sequences with Nucmer27 to select highly confident organelle genomes ...
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bioRxiv - Microbiology 2021Quote: ... The CCS (Circular Consensus Sequence) tool from PacBio SMRT Tools v10.1 was used to calculate the consensus sequences from the subreads in the PacBio data for each sample ...
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bioRxiv - Evolutionary Biology 2021Quote: ... Long reads sequencing (PacBio, USA) was performed as previously reported 13 ...
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bioRxiv - Genomics 2021Quote: ... A primary assembly was produced from PacBio RSII reads using CANU Version 1.5 [34] assuming a genome of 35 Mb and with standard parameters ...
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bioRxiv - Microbiology 2021Quote: ... to 15 kb and size-selected using the Blue Pippin (Sage Science, USA) and prepared for sequencing using SMRTbell Express Template Preparation Kit 1.0 (PacBio, USA) according to manufacturers’ instructions ...
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bioRxiv - Microbiology 2021Quote: ... with the Sequel II SMRT Cell 8M (PacBio, USA) for a 30 hour data collection time.
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bioRxiv - Microbiology 2021Quote: ... a Circular Consensus Sequence (CCS) protocol (PacBio) was used to obtain high quality long reads on two samples Bon-1C-2011 and Del-2b-2011 ...
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bioRxiv - Microbiology 2021Quote: ... using the Sequel II Sequencing Kit 1.0 (PacBio, USA) with the Sequel II SMRT Cell 8M (PacBio ...
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bioRxiv - Microbiology 2021Quote: ... Sequencing was performed on the Sequel II system (PacBio, USA) using the Sequel II Sequencing Kit 1.0 (PacBio ...
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bioRxiv - Microbiology 2021Quote: ... 6.0.0 (https://ccs.how/) was utilized with the sub-read data from PacBio CCS to produce HiFi reads ...
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bioRxiv - Microbiology 2021Quote: ... Complete genome sequences of CNR65D6 and CNR85I8 and the long-read sequencing data have been deposited at DDBJ/EMBL/GenBank with the accession number ERZ3517884 (PacBio reads, ERR6414227) and ERZ3518335 (ERS6682837 PacBio reads ...