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Citations for PacBio :
1051 - 1100 of 1293 citations since 2020
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Genomics 2021Quote: High molecular weight DNA for Pacific Biosciences (PacBio, Menlo Park, USA) Single-Molecule Real-Time (SMRT ...
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bioRxiv - Genomics 2021Quote: ... It uses a repeat graph as its core data structure and utilises raw data in FASTA or FASTQ format from PacBio® ...
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bioRxiv - Genomics 2021Quote: ... (PacBio) pipeline generated 197k-223k nominally full length non-chimeric polished transcripts (“reads” ...
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bioRxiv - Genomics 2021Quote: ... SMRTbell libraries were prepared using a DNA Template Prep Kit 1.0 (PacBio), and 56 20-kb SMRTbell libraries were constructed ...
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bioRxiv - Genomics 2021Quote: ... and sequencing) were processed using the protocol outlined in SMRT Link (v9.0) (PacBio, California, United States). Briefly ...
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bioRxiv - Genomics 2021Quote: ... Sequencing was performed on the Pacific Biosciences (PacBio) Sequel System with eight Single Molecular Real-Time (SMRT ...
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bioRxiv - Genomics 2021Quote: ... A long insert library for KSR5 was also prepared and sequenced on an RSII instrument (PacBio, Menlo Park, CA, USA). The paired-end sequence reads were used for genomic size estimation based on k-mer frequency (k = 17 ...
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bioRxiv - Genomics 2021Quote: ... alignment was performed using minimap2 (v2.17, Li, 2016, using parameters -x map-pb for PacBio and ax sr for Illumina data ...
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bioRxiv - Genomics 2021Quote: ... and a SMRTbell library was prepared using the SMRT bell Template Prep Kit 1.0-SPv3 (Pacbio, 100-991-900). DNA quantification was performed using a Qubit fluorometer (Thermo Fisher ...
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bioRxiv - Genomics 2021Quote: ... cDNA synthesis and library preparation using the SMRTbell Template Prep Kit (PacBio, 100-938-900) were performed as described on the ENCODE portal (https://www.encodeproject.org/documents/77db752f-abf7-4c93-a460-510464134f52) ...
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bioRxiv - Genomics 2021Quote: ... The 1,000-cell library was sequenced using 2 SMRTcells (PacBio, 101-008-000) for a sequencing depth of 5,764,421 full-length non-chimeric reads.
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bioRxiv - Genomics 2021Quote: ... single-cell barcoded cDNA with the SMRTbell Template Prep Kit (PacBio, 100-938-900) according to the manufacturer’s protocol for sequencing on a Sequel II ...
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bioRxiv - Genomics 2021Quote: We intersected the uniform 100 bp sized TSS regions from K562 (as described above) with K562 PacBio 5’ read ends (generated from Format-PacBio-Data.sh, see above for more details) using bedtools intersect with the -c flag-which counts the number of overlapping entries-and requiring genomic strands to match.
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bioRxiv - Genetics 2021Quote: We obtained Pacific Bioscience (PacBio) long-read CLR sequencing data from Audano et al ...
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bioRxiv - Genetics 2021Quote: ... both of which resolved the MEIs from PacBio long-read sequencing data ...
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bioRxiv - Evolutionary Biology 2021Quote: We sequenced two strains (MUN-016 and TOM-007) using Pacific Biosciences (PacBio) technology and the remaining 30 using Oxford Nanopore Technologies (ONT ...
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bioRxiv - Evolutionary Biology 2021Quote: ... using RS Modification and Motif Analysis within the SMRT Analysis System (v2.3, January 2015; PacBio, Menlo Park, CA, USA). The assembled scaffold data were run through QUAST [76] to estimate assembly statistics ...
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bioRxiv - Genetics 2021Quote: ... Scaffolds were then polished with three rounds of arrow (raw PacBio reads ...
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bioRxiv - Genetics 2021Quote: ... and five rounds of Pilon (raw PacBio reads mapped with minimap2 ...
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bioRxiv - Genomics 2021Quote: ... Yang (strain LA06) were sequenced for this study using the Pacific Biosciences (PacBio) Sequel platform at Nextomics Biosciences (Wuhan ...
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bioRxiv - Genomics 2021Quote: ... and sequenced on SMRT cells (1M v3 LR) in a PacBio Sequel system (PacBio). Raw sequence reads of each variety were divided into two subsets with the trio-binning strategy8 using the short-read data of C ...
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bioRxiv - Genomics 2021Quote: ... Long-read DNA libraries were constructed using the SMRTbell Express Template Prep Kit 2.0 (PacBio, Menlo Park, CA, USA) and sequenced on SMRT cells (1M v3 LR ...
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bioRxiv - Genomics 2021Quote: ... The size-selected DNA was prepared into a PacBio library using the SMRTbell® Express Template Preparation Kit 2.0 (PacBio, USA), then sequenced across two PacBio Sequel II 8M SMRT cells (PN:101-389-001) ...
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bioRxiv - Genomics 2021Quote: ... Two rounds of Arrow polishing (PacBio gcpp v2.0.2) using PacBio reads ...
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bioRxiv - Genomics 2021Quote: ... Libraries were sequenced with four samples per run on a Sequel II System (PacBio). One library failed sequencing due to a problem with its library preparation (treatment sample from Participant 6) ...
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bioRxiv - Genomics 2021Quote: ... Sequencing libraries for each sample were created using the SMRTbell Express Template Prep Kit 2.0 (PacBio, Cat. No. 100-938-900) per manufacturer’s instructions ...
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bioRxiv - Genomics 2021Quote: The amplicon library was created using the SMRTbell Express Template Prep Kit 2.0 (PacBio, Cat. No. 100-938-900) as per manufacturer’s instructions ...
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bioRxiv - Genomics 2021Quote: ... The library was sequenced on the Sequel II System (PacBio). After sequencing ...
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bioRxiv - Genomics 2021Quote: All procedures were conducted according to the standard protocol supplied by PacBio. Library construction consisted of the following steps ...
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bioRxiv - Microbiology 2021Quote: ... and the DNA libraries prepared using the SMRTbell Template Prep kit (PacBio). Hybrid assembly of Illumina paired-end reads and MinION or PacBio reads was performed using Unicycler (v.0.4.8 ...
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bioRxiv - Microbiology 2021Quote: ... coli strain UPEC129 was also performed using Pacific Biosciences (PacBio) RSII sequencer (Genoscreen ...
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bioRxiv - Genomics 2021Quote: We use the diploid assembly produced by hifiasm v0.11 using 34x coverage (two 15 kb and two 20 kb libraries) by PacBio HiFi Sequel II System with Chemistry 2.0 reads (https://github.com/human-pangenomics/HG002_Data_Freeze_v1.0#hg002-data-freeze-v10-recommended-downsampled-data-mix ...
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bioRxiv - Microbiology 2021Quote: Total RNA extracted from nasopharyngeal swabs were prepared according to Iso-seq Express Template Preparation (Pacbio). Full length cDNA is generated using NEBNext Single Cell/ Low Input cDNA synthesis and Amplification Module in combination with Iso-seq Express Oligo Kit ...
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bioRxiv - Evolutionary Biology 2021Quote: ... A 20kb SMRTbell template library was constructed for each pool separately and sequenced individually on the PacBio Sequel system using 3 PacBio SMRT® sequencing cells per library (6 PacBio SMRT® sequencing cells in total)(Macrogen Europe) ...
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bioRxiv - Genetics 2021Quote: ... and the Express Library Prep Kit v2 (PacBio), size selecting on the SageELF platform (Sage Science ...
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bioRxiv - Microbiology 2021Quote: ... DNA from November 2017 was sequenced in addition by PacBio sequencing on a Sequel instrument (Pacific Biosciences ...
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bioRxiv - Microbiology 2021Quote: ... coli isolates were selected for long read sequencing using Sequel II System (PacBio Biosciences Inc.) or MinION device (Oxford Nanopore Technology ...
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bioRxiv - Genomics 2021Quote: HiFi SMRTbell Libraries of FCtx1 and FCtx2 were constructed according to the manufacturer’s manual (entitled “Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 2.0”) by using SMRTbell Express Template Prep Kit 2.0 (PacBio, catalog no. 100-938-900). For both samples ...
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bioRxiv - Evolutionary Biology 2021Quote: ... The obtained circular consensus sequences (CCS) reads were quality-filtered as described previously (PacBio RS II)29 ...
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bioRxiv - Evolutionary Biology 2021Quote: The Pacific Bioscience (PacBio) data were then sequenced at the Centre for Genomic Research ...
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bioRxiv - Genomics 2021Quote: ... HMW DNA was submitted to the Australian Genome Research Facility (Brisbane) for Pacific Biosciences (PacBio) HiFi sequencing ...
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Genome Assembly of the Roundjaw Bonefish (Albula glossodonta), a Vulnerable Circumtropical SportfishbioRxiv - Genomics 2021Quote: DNA was prepared for long-read sequencing with Pacific Biosciences (PacBio; Menlo Park, California, USA) [37] SMRTbell Library kits ...
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bioRxiv - Genomics 2021Quote: ... The draft genome was constructed from PacBio long reads using wtdbg2 v2.5 (Ruan and Li 2020) ...
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bioRxiv - Immunology 2021Quote: ... Sequencing results by PacBio returned 35-47k reads per sample sequenced ...
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bioRxiv - Evolutionary Biology 2021Quote: ... HGAP4 in SMRT Link v.6 (PacBio) was used to obtain polished long reads in fastq format ...
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bioRxiv - Microbiology 2021Quote: ... the RK13 cells we used were confirmed to be of European rabbit (Oryctolagus cuniculus) origin by PacBio sequencing (ArrayExpress accession ...
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bioRxiv - Microbiology 2021Quote: ... nonchimeric reads were then generated using the lima (version 2.0.0) and Isoseq3 (version 3.4.0) packages provided by PacBio.
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bioRxiv - Microbiology 2021Quote: ... The genome of strain CS1 was sequenced by PacBio platform (PacBio, USA) using single molecule real-time (SMRT ...
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bioRxiv - Microbiology 2021Quote: ... MetaQUAST was used to compare assemblies from the three sequencing methods (Illumina-WGA, PacBio-WGA, and PacBio).
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bioRxiv - Microbiology 2021Quote: ... and AM were assembled with the ‘HGAP4’ pipeline (SMRT Link Software, PacBio) with a seed coverage of 30 for CB-01 ...