Labshake search
Citations for Illumina :
2201 - 2250 of 10000+ citations since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Genomics 2024Quote: ... Methylation was measured from 250 ng of bisulfite-converted DNA using the Illumina EPIC Beadchip (Illumina Inc, San Diego, CA, USA). Quality control and preprocessing for muscle tissue DNAm was carried out from IDATs in the Geroscience Core in the Butler Columbia Aging Center ...
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bioRxiv - Microbiology 2024Quote: ... 16S rRNA PCR amplification and next-generation sequencing were performed at MR DNA (www.mrdnalab.com) using primers 515F-Y (5’-GTGCCAGCMGCCGCGGTAA-3’)73 and 806R (5’-GGACTACHVGGTWTCTAAT-3’)74 using Illumina MiSeq (Illumina Corp) 2x300 paired- end reads ...
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bioRxiv - Genomics 2024Quote: ... and reduced representation libraries were sequenced using single-end reads with a NextSeq 2000 P2 reagent kit (100 Cycles; Illumina).
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bioRxiv - Genomics 2024Quote: ... The libraries were prepared with Ampliseq Library Plus for Illumina kit (Illumina, San Diego, CA, USA and using Illumina’s Ampliseq CD indexes set A(Illumina), and their quality was assessed with High Sensitivity DNA reagents on an Agilent 2100 Bioanalyzer System ...
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bioRxiv - Genomics 2024Quote: ... The libraries were prepared with Ampliseq Library Plus for Illumina kit (Illumina, San Diego, CA, USA and using Illumina’s Ampliseq CD indexes set A(Illumina), and their quality was assessed with High Sensitivity DNA reagents on an Agilent 2100 Bioanalyzer System ...
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bioRxiv - Microbiology 2024Quote: ... Pair-end libraries were generated using a Nextera XT DNA Kit and sequenced using a NovaSeq 6000 system (both from Illumina, San Diego, CA, USA). Sequenced data were preprocessed using Trimmomatic v.0.33 and FastQC v.0.12.1 ...
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bioRxiv - Microbiology 2024Quote: ... and 250 bp paired-end libraries were then generated from the extracted DNA using a Nextera XT DNA Kit (Illumina, San Diego, CA, USA). Libraries were sequenced using a NovaSeq 6000 system (Illumina ...
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bioRxiv - Genomics 2024Quote: ... The libraries were prepared with Ampliseq Library Plus for Illumina kit (Illumina, San Diego ...
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bioRxiv - Genomics 2024Quote: ... Paired-end sequencing was performed on a MiSeq sequencer (Illumina, San Diego, CA, USA) using the MiSeq Reagent kit v3 (600 cycles ...
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bioRxiv - Genomics 2024Quote: ... After preliminary sequencing on a Miseq Nano flow cell (Illumina, San Diego, CA, USA), libraries were sequenced on the Novaseq 6000 S Prime (Illumina ...
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bioRxiv - Genomics 2024Quote: ... libraries were sequenced on the Novaseq 6000 S Prime (Illumina, San Diego, CA, USA) sequencing system with 150bp paired-end chemistry.
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bioRxiv - Genomics 2024Quote: ... RNA extracted from these fruits was pooled to create a single sample for the construction of cDNA libraries using the TruSeq RNA Library Prep Kit v2 (Illumina, Inc., USA) (Illumina ...
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bioRxiv - Genomics 2024Quote: ... –s 4.75 (for mapped Illumina reads) or 1.5 (for mapped PacBio reads) ...
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bioRxiv - Genomics 2024Quote: ... libraries were prepared using the Illumina DNA Prep followed by Illumina NovaSeq 6000 sequencing with 150-bp paired-end technology to a target depth of 16x ...
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bioRxiv - Genomics 2024Quote: ... Libraries were multiplexed where appropriate and at least 35 million reads collected per condition by 80 bp single end sequencing using NextSeq 500 (Illumina) as [13].
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bioRxiv - Genomics 2024Quote: ... Genomic sequencing library was prepared from 1 ng of purified DNA using the Illumina Nextera XT library preparation kit (Illumina #FC-131-1096), following the manufacturer’s instructions or with a reduced volume of reagents to 20% ...
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bioRxiv - Genomics 2024Quote: ... and M29) and the W2017 Morex line using the 10X Genomics linked read library preparation followed by Illumina NovaSeq 6000 sequencing with 150-bp paired-end technology to a target depth of 40x ...
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bioRxiv - Genomics 2024Quote: ... Sequences for the 13 landraces were generated using the Illumina TruSeq DNA Nano Prep followed by Illumina NovaSeq 6000 sequencing with 150-bp paired-end technology to a target depth of 40x.
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bioRxiv - Genomics 2024Quote: ... Trimmomatic v0.39 [26] was used to trim adapters from Illumina RNA-seq reads with the flags ...
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bioRxiv - Microbiology 2024Quote: ... The NovaSeq Sequencing System (Illumina, San Diego, CA, USA) was used to generate 150 bp paired-end reads to obtain ∼35 million reads per sample ...
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bioRxiv - Microbiology 2024Quote: ... The libraries were clustered and sequenced (2 x 150 bp) on a NextSeq 550 Sequencing System (Illumina) using a NextSeq 500/550 Mid Output v2.5 kit (300 cycles ...
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bioRxiv - Microbiology 2024Quote: ... Ribo-Zero(TM) rRNA Removal Kit (Illumina, San Diego, CA, USA) and QIAseq FastSelect rRNA Removal Kit (Qiagen ...
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bioRxiv - Microbiology 2024Quote: An equimolar pool of the prepared libraries was sequenced with a NovaSeq 600 instrument (Illumina, San Diego, California, USA) in paired-end mode (2 × 100 bp) ...
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bioRxiv - Microbiology 2024Quote: ... Final sequencing was conducted using the v3 chemistry (PE300) on the Illumina MiSeq platform (Illumina Inc.).
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bioRxiv - Microbiology 2024Quote: ... Qualified RNA was subjected to cDNA library preparation using the Illumina stranded mRNA-Kit (Illumina, San Diego, USA) quantified and qualified (DNA High Sensitivity assay ...
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bioRxiv - Genomics 2024Quote: ... the genomic libraries were prepared with Nextera XT Kits (Illumina, USA) and DNA sequencing was performed using paired-end reads on a MiSeq ...
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bioRxiv - Genomics 2024Quote: ... NextSeq or HiSeq system (Illumina, USA).
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bioRxiv - Genomics 2024Quote: Paired-end sequencing was performed using an Illumina HiSeq3000 (Illumina, California, USA) system ...
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bioRxiv - Genomics 2024Quote: ... Samples were finally demultiplexed using bcl2fastq v2.20 Conversion Software (Illumina, San Diego, CA).
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bioRxiv - Genomics 2024Quote: ... Libraries were sequenced on a NovaSeq 6000 (Illumina, San Diego, CA) at SE75.
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bioRxiv - Genomics 2024Quote: ... with ∼30,000 add-on markers from Infinium PsychArray-24 focused content panel (Illumina, San Diego, CA). Briefly ...
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bioRxiv - Genomics 2024Quote: ... Methylation was measured from 160ng of bisulfite-converted DNA using the Illumina EPIC Beadchip (Illumina Inc, San Diego, CA, USA).
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bioRxiv - Genomics 2024Quote: ... nQuire Tool 92 in conjunction with statistics of variants from Illumina short reads were utilized (Supplementary Table 5).
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bioRxiv - Genomics 2024Quote: Applying K-mer-based techniques to Illumina short reads from Illumina sequencing libraries allowed us to estimate the genome’s size ...
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bioRxiv - Genomics 2024Quote: ... Gap-filled scaffolds were polished with HyPo (Kundu et al., 2019) by using mapped short (Illumina) and long reads (PacBio) ...
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bioRxiv - Genomics 2024Quote: ... montana RNAseq data (Illumina Truseq 150bp PE) [62] ...
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Chromosome-level assembly of Cucumis sativus cv. ‘Tokiwa’ as a reference genome of Japanese cucumberbioRxiv - Genomics 2024Quote: ... We also sequenced the RNA with Hiseq4000 (Illumina Inc., San Diego, USA) for gene annotation ...
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bioRxiv - Genomics 2024Quote: ... 16S rRNA gene reads were retrieved from Illumina (Short Read “SR”) and PacBio (Long Read “LR” ...
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bioRxiv - Genomics 2024Quote: ... and precision/recall/F1 were calculated with hap.py (v0.3.15) (https://github.com/Illumina/hap.py), stratifying by region with a bed file containing annotated exon coordinates based on their expression level quantified in transcripts per million (TPM).
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bioRxiv - Genomics 2024Quote: ... RNA extracted from these fruits was pooled to create a single sample for the construction of cDNA libraries using the TruSeq RNA Library Prep Kit v2 (Illumina, Inc., USA) (Illumina, Inc., USA). The Agilent 2100 Bioanalyzer (Agilent ...
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bioRxiv - Microbiology 2024Quote: DNA was extracted from pelleted cells using a standard SDS buffer and phenol: chloroform:isoamyl alcohol chemical lysis method [16] and sequenced using in-house MiSeq (Illumina, San Diego, USA) and MinION (Oxford Nanopore ...
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bioRxiv - Microbiology 2024Quote: Library preparation was conducted using the TruSeq Stranded mRNA sample preparation kit (Illumina, San Diego, California) following the manufacturer’s instructions ...
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STAT5B SH2 variants disrupt mammary enhancers and the stability of genetic programs during pregnancybioRxiv - Genetics 2024Quote: ... and paired-end sequencing was done with a NovaSeq 6000 instrument (Illumina).
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STAT5B SH2 variants disrupt mammary enhancers and the stability of genetic programs during pregnancybioRxiv - Genetics 2024Quote: ... Whole exome sequencing was performed on a NovaSeq 6000 instrument (Illumina).
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STAT5B SH2 variants disrupt mammary enhancers and the stability of genetic programs during pregnancybioRxiv - Genetics 2024Quote: ... Libraries for sequencing were prepared according to the manufacturer’s instructions with TruSeq Stranded Total RNA Library Prep Kit with Ribo- Zero Gold (Illumina, RS-122-2301) and paired-end sequencing was done with a NovaSeq 6000 instrument (Illumina).
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bioRxiv - Genetics 2024Quote: ... Samples were preamplified using High-Fidelity 2X PCR Master Mix (New England Bio-labs, #M0541L) and adapters (Illumina Nextera XT Index kit #FC-131-1001). The number of additional cycles was determined by quantitative PCR ...
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bioRxiv - Immunology 2024Quote: ... the Truseq Stranded mRNA kit (Illumina) was used with an input of 100 nanograms of total RNA ...
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bioRxiv - Genomics 2024Quote: ... Then the CHi-C library was sequenced (paired-end 150bp, Illumina NovaSeq6000) for a total of 500 million reads per replicate ...
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bioRxiv - Evolutionary Biology 2024Quote: ... Common garden experiment WGBS libraries were created following the TruSeq DNA Methylation kit (Illumina Inc., EGMK91324) according to the manufacturers’ protocol ...
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bioRxiv - Evolutionary Biology 2024Quote: ... and a Nextera XT Index kit (Illumina, FC-131-1001). Sequencing was done on a HiSeq 2500 (100 bp PE ...