Labshake search
Citations for Illumina :
2251 - 2300 of 10000+ citations since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Neuroscience 2024Quote: ... Sequencing was done on a Nextseq 75 cycles high output kit (Illumina; paired end sequencing with gene read from one side of the library and the barcode read from the other side ...
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bioRxiv - Neuroscience 2024Quote: ... These libraries were subjected to paired end sequencing on the NovaSeq 6000 system (Illumina). Demultiplexed FASTQ files were aligned to the GRCm39 Mus musculus reference genome using Cell Ranger 6.1.2 with the include-introns flag selected ...
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bioRxiv - Neuroscience 2024Quote: ... cDNA libraries were prepared from the purified RNA using the TruSeq Stranded Total RNA LT library preparation kit (Illumina) following the manufacturer’s protocol ...
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bioRxiv - Neuroscience 2024Quote: ... Samples were tagmented and indexed using a NexteraXT DNA Library Preparation kit (Illumina Cat#FC-131-1096) with NexteraXT Index Kit V2 Set A (Illumina Cat#FC-131-2001 ...
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bioRxiv - Neuroscience 2024Quote: ... with NexteraXT Index Kit V2 Set A (Illumina Cat#FC-131-2001) according to manufacturer’s instructions except for decreases in volumes of all reagents ...
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bioRxiv - Developmental Biology 2024Quote: ... bcl2fastq v2.17.1.14 conversion software (Illumina, Inc.) was used to demultiplex sequencing data and convert base call (BCL ...
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bioRxiv - Microbiology 2024Quote: ... Quantified libraries were then pooled and sequenced using the Illumina NovaSeq 6000 platform (Illumina Inc., San Diego, CA, USA) according to the effective library concentration and the required data amount ...
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bioRxiv - Genomics 2024Quote: ... Six pooled libraries were then loaded at 4nM and sequenced on a NovaSeq SP flow cell (Illumina) with 28 bases for read1 ...
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bioRxiv - Developmental Biology 2024Quote: ... Samples were demultiplexed using bcl2fastq Conversion Software (Illumina). Adaptor trimmed FASTQ paired- end reads were aligned using STAR (v.2.6.1a ...
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bioRxiv - Cell Biology 2024Quote: ... Illumina sequencing (Illumina HiSeq), and analyses were performed by Novogene Bioinformatics Technology Co. ...
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bioRxiv - Developmental Biology 2024Quote: ... and samples with an RNA Integrity Number (RIN) >8 were used to generate RNA sequencing libraries using the Illumina® Stranded mRNA Prep kit (Illumina).
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bioRxiv - Neuroscience 2024Quote: ... Qualified libraries were sequenced on an Illumina NovaSeq 6000 platform using S4 flow cells (Illumina, USA) using a SE50 bp mode ...
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bioRxiv - Neuroscience 2024Quote: Total RNA was employed for library preparation using the TruSeq RNA Library Prep Kit v2 (Illumina, USA), following the manufacturer’s instructions ...
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bioRxiv - Neuroscience 2024Quote: ... Multiplexed libraries were directly loaded onto a HiSeq2000 (Illumina) with a 50 bp single-read configuration ...
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bioRxiv - Neuroscience 2024Quote: ... Then the libraries were sequenced at the paired-end 150 bp using HiSeq X Ten (Illumina).
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bioRxiv - Neuroscience 2024Quote: ... The cDNA libraries were sequenced using the HiSeq 4000 platform (Illumina) to achieve an average depth of 50,000 reads per cell and 2,500 genes per cell ...
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bioRxiv - Neuroscience 2024Quote: DNA libraries were prepared using the Nextera XT DNA Library Preparation Kit (Illumina) and IDT Unique Dual Indexes with total DNA input of 1ng ...
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bioRxiv - Neuroscience 2024Quote: ... RNA samples were rRNA and globin depleted via the Globin-Zero Gold kit (Illumina, USA) and first-strand synthesis and second strand synthesis were performed using the Ultra II First Strand Module and Ultra II Directional Second Strand Module (New England Biolabs ...
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bioRxiv - Neuroscience 2024Quote: ... Samples were sequenced on a Nova-seq (Illumina) at the Johns Hopkins University Single Cell and Transcriptomics Sequencing Core at a minimum read depth of 50000 reads per nucleus.
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bioRxiv - Neuroscience 2024Quote: ... Pooled libraries were paired-end sequenced on a High Throughput Run Mode flow cell with the V4 sequencing chemistry on an Illumina HiSeq 2500 platform (Illumina, Inc., San Diego, CA) following Illumina’s recommended protocol to generate paired-end reads of 126-bases in length.
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bioRxiv - Neuroscience 2024Quote: ... Base calling was done by Illumina Real Time Analysis 3 and output of NextSeq Control Software was demultiplexed and converted to FastQ format with the Illumina Bcl2fastq software (version 1.9.0).
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bioRxiv - Neuroscience 2024Quote: ... 200 bp sequencing kit (Illumina Inc.) with 10% PhiX included to improve base diversity ...
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bioRxiv - Neuroscience 2024Quote: ... and sequenced on an Illumina MiniSeq using the MiniSeq Mid Output Kit with standard sequencing primers (Illumina #FC-420-1002 ...
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bioRxiv - Neuroscience 2024Quote: ... Libraries were sequenced (75 bp, single-end) on a NextSeq 500 platform (Illumina) in accordance with the manufacturer’s protocol ...
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bioRxiv - Neuroscience 2024Quote: Nuclei from activated and non-activated cells were transposed using Illumina’s transposition kit (Illumina; cat#20034198) for 35 minutes for non-activated and 40 minutes for activated nuclei at 37°C at 1000RPM ...
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bioRxiv - Neuroscience 2024Quote: ... Libraries were prepared using the strand specific RNA-Seq library preparation TruSeq Stranded mRNA kit (Illumina). They were next multiplexed by 6 on 2 high-output flow cells ...
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bioRxiv - Neuroscience 2024Quote: ... A 75-bp single read sequencing was performed on a NextSeq 500 (Illumina). A mean of 49 ± 9 million passing Illumina quality filter reads was obtained for each of the 12 samples.
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bioRxiv - Neuroscience 2024Quote: ... Genotypes were determined with the Illumina Infinium Omni2.5M-8 array (Illumina, San Diego, CA, USA). The PLINK toolset (http://pngu.mgh.harvard.edu/purcell/plink/ ...
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bioRxiv - Neuroscience 2024Quote: ... and Illumina Nextera XT (Illumina, San Diego, CA, USA) library was used for sequencing library preparation ...
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bioRxiv - Molecular Biology 2024Quote: ... validated for activity in a corresponding assay and three clones of each cell line were subjected to a genotyping array screening using a Infinium Global Screening Array-24 Kit (Illumina, #20030770) to check for chromosomal rearrangements in iPSCs clones ...
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bioRxiv - Molecular Biology 2024Quote: ... Small RNA libraries were generated using NEXTFlex Small RNA Library Prep Kit v3 (Cat #NOVA-5132–06) and sequenced on the NextSeq 500 system (Illumina, CA, USA) by the Genomic Unit at Genyo ...
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bioRxiv - Molecular Biology 2024Quote: ... 100 cycle lane (Illumina).
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bioRxiv - Molecular Biology 2024Quote: Whole genome sequencing was performed using the MiSeq (Illumina). FASTQ files with 2,110,430 reads of Churi genome derived from the sequencing were assembled with Unicycler version 0.4.853 ...
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bioRxiv - Molecular Biology 2024Quote: ... Sequencing libraries were prepared with the TruSeq Stranded mRNA kit (Illumina) and run on the NextSeq 2000 ...
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bioRxiv - Microbiology 2024Quote: ... The obtained RNA-sequencing library was sequenced on a NextSeq 500 instrument with a 150 cycles Mid Output Kit (Illumina, San Diego, CA, USA) in paired-end mode ...
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bioRxiv - Molecular Biology 2024Quote: ... The transposition reaction was performed with 25 μl 2x TD buffer from and 2.5 μl transposase (100nM final) from Illumina Tagment DNA Enzyme and Buffer Small Kit (Illumina ...
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bioRxiv - Microbiology 2024Quote: ... flanked by Illumina standard adapter sequences ...
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bioRxiv - Neuroscience 2024Quote: ... Library construction and sequencing were carried out at the Dresden Concept Genome Center (DcGC) using the HiSeq 2000 Next Generation Sequencer (Illumina, Inc., USA). Sequenced data was processed with the Space Ranger (10X Genomics ...
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bioRxiv - Microbiology 2024Quote: ... Sequencing libraries were prepared using the Nextera XT kit (Illumina, Cambridge, UK) and analysed on a NextSeq sequencer (Illumina ...
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bioRxiv - Microbiology 2024Quote: ... Metagenomic shotgun libraries were prepared using the Nextera XT DNA Library Preparation Kit (Illumina) and passed to paired-end sequencing (2 × 150 bp ...
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bioRxiv - Microbiology 2024Quote: ... and a second round of PCR was carried out with the IDT for Illumina UD indexes (Illumina Corp.) to add adapter tags ...
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bioRxiv - Microbiology 2024Quote: ... Libraries were pooled and sequenced (single-end 75-bp reads) on Illumina NextSeq 500 using the High Output V2 kit (Illumina). Sequencing data were analyzed as described previously76 (additional details are provided in Supplementary Methods).
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bioRxiv - Genomics 2024Quote: ... Sequencing was performed in the Miseq system using the MiSeq Reagent Kit v3 (150-cycle) (Illumina, MS-102-3001). Following sequencing and demultiplexing ...
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bioRxiv - Genomics 2024Quote: ... The transposition reaction was performed by incubating 25,000 nuclei with Nextera Tn5 transposase (Illumina) at 37°C for 1 hour ...
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bioRxiv - Genomics 2024Quote: ... We used the Nextera XT DNA Library Preparation Kit (Illumina, FC-131-1024) for tagmentation with a few modifications ...
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bioRxiv - Cancer Biology 2024Quote: ... RNA sequencing libraries were generated using TruSeq RNA Access Library Prep Kits (TruSeq RNA Exome kits; Illumina) and sequenced on NextSeq500 sequencers using 75bp paired-end sequencing method (Illumina ...
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bioRxiv - Microbiology 2024Quote: ... Transposon mutants were obtained from the University of Washington and confirmed by Illumina sequencing (47) ...
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bioRxiv - Cancer Biology 2024Quote: ... and sequenced on NextSeq500 sequencers using 75bp paired-end sequencing method (Illumina, San Diego, CA). Each sample was processed through an RNA sequencing data analysis pipeline where reads were mapped to the ENSEMBL human genome GRCh37 build 71 using TopHat2 (42) ...
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bioRxiv - Plant Biology 2024Quote: RNA samples were submitted to the Cornell Institute for Biotechnology Genomics Center for 3’ mRNA-seq library construction using a QuantSeq FWD kit (Lexogen, Vienna, Austria) followed by 1×75 bp sequencing on an Illumina NextSeq500 (Illumina, Hayward, CA, USA). Sequencing statistics were calculated with v0.15.0 seqkit stats with parameters -j 10 -T(Shen et al. ...
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bioRxiv - Plant Biology 2024Quote: ... and resulting bcl files were converted to fastq files using bcl2fastq (Illumina). The RNA-seq raw data are available in ArrayExpress database under accession number E-MTAB-14027 ...