Labshake search
Citations for Illumina :
1151 - 1200 of 10000+ citations since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Genomics 2024Quote: ... Total RNA-seq libraries were then generated using TruSeq Stranded mRNA Library Prep kit and TruSeq RNA Single Indexes kits A and B (Illumina, San Diego, CA) omitting the poly-A selection step and starting from the fragmentation step ...
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bioRxiv - Genomics 2024Quote: ... and generated 80.00 million PE 150-bp reads (Illumina NovaSeq; FGCZ, Switzerland).
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bioRxiv - Genomics 2024Quote: ... Base calling was done by Illumina RTA3 and output of NCS was demultiplexed and converted to FastQ format with Illumina Bcl2fastq (v1.9.0).
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bioRxiv - Genomics 2024Quote: ... RNA-seq libraries were prepared from 200ng RNA using the Illumina Truseq stranded mRNA library prep (Illumina, 20020595) after depletion of ribosomal RNA with Ribo Zero Gold (Illumina ...
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bioRxiv - Genomics 2024Quote: ... Subsequent methylation analysis was performed on an Illumina (San Diego, CA, USA) iScan platform using the Infinium MethylationEPIC BeadChip according to standard protocols provided by Illumina. Briefly ...
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bioRxiv - Genomics 2024Quote: ... The final barcoded library was pooled on a quarter S4 flow cell in 2x150 bp paired-end mode on an Illumina NovaSeq sequencer (Illumina, USA). Hi-C library preparation and sequencing were done at the Norwegian Sequencing Centre (Oslo ...
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bioRxiv - Genomics 2024Quote: ... after depletion of ribosomal RNA with Ribo Zero Gold (Illumina, 20037135). Both whole-transcriptome amplification and sequencing library preparations were performed in two 96-well plates with half the samples each ...
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bioRxiv - Genomics 2024Quote: We followed the general GATK version 4 Best Practices to call genetic variants from Illumina RNA-seq data ...
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bioRxiv - Developmental Biology 2024Quote: ... Libraries were multiplexed and sequenced using P2 and P3 (100 Cycles) reagents on a NextSeq 2000 device (Illumina, Table 1S). Sequencing data was demultiplexed and converted to FASTQ format using bcl2fastq2 v2.20 (Illumina ...
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bioRxiv - Developmental Biology 2024Quote: ... Sequencing data was demultiplexed and converted to FASTQ format using bcl2fastq2 v2.20 (Illumina) and count matrices were generated with Cellranger v5.0.1 (10X Genomics ...
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bioRxiv - Developmental Biology 2024Quote: ... The final pool contained 16 samples each with 10000 cells per time point and they were sequenced on NovaSeq 6000 platform using NovaSeq 6000 S4 Reagent Kit v1.5 /200 cycles (Illumina) with 28×10×10×90 configuration run leading to 70000 reads/cell.
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bioRxiv - Developmental Biology 2024Quote: ... Samples were then processed with the Illumina Infinium HumanMethylation450 BeadChip (Illumina Inc., San Diego, CA). Quality control occurred separately in each cohort18 and data from both cohorts were then normalized together as a single set to minimize technical variability ...
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bioRxiv - Developmental Biology 2024Quote: ... Barcoded cDNA libraries were multiplexed onto a TruSeq paired-end flow cell and sequenced (100-bp paired-end reads) with a TruSeq 200-cycle SBS kit (Illumina). Samples were run on Illumina HiSeq2500 sequencers located at the KUMC Genome Sequencing Facility ...
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bioRxiv - Developmental Biology 2024Quote: ... Pellets were resuspended in 50 µL of transposition reaction (2X TD buffer, 1X PBS, 0.1% Tween-20, 0.1% Digitonin, 5µL of Illumina Tn5 transposase) and incubated for 30 min at 37°C with 1,000 rpm agitation ...
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bioRxiv - Developmental Biology 2024Quote: ... 200 pg of cDNA were used with the Nextera XT kit (Illumina, FC-131-1096). Library molarity and quality was assessed with the Qubit and TapeStation using a DNA High sensitivity chip (Agilent Technologies) ...
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bioRxiv - Cell Biology 2024Quote: ... Libraries were prepared using non-strand-specific Illumina TruSeq Sample Preparation Kits followed by Illumina sequencing ...
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bioRxiv - Cell Biology 2024Quote: ... in conjunction with the TruSeq RNA UD Indexes (Cat# 20022371, Illumina). 15 cycles of PCR were performed ...
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bioRxiv - Cell Biology 2024Quote: ... 8 bases for index 1 and 8 bases for index 2) on NextSeq 500 using the NextSeq 500 High Output Kit 75-cycles (Illumina, Cat# FC-404-1005). Flow lanes were loaded at 1.8pM ...
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bioRxiv - Cell Biology 2024Quote: ... Prime Finish Mix provided in the TruSeq Stranded Total RNA Library Prep Gold Kit (Cat# 20020599, Illumina, San Diego, CA, USA) used for completing library preparation ...
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bioRxiv - Cell Biology 2024Quote: ... 8 bases for index 1 and 8 bases for index 2) on NextSeq 500 using the NextSeq 500 High Output Kit 75-cycles (Illumina, Cat# FC-404-1005). Flow lanes were loaded at 1.8pM ...
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bioRxiv - Cell Biology 2024Quote: ... Ribo-Zero Plus stranded library preparation kit (Illumina) was used to generate libraries from a total of 1µg RNA for each sample ...
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bioRxiv - Cell Biology 2024Quote: ... sequenced on the NovaSeq 6000 S2 platform (Illumina), and aligned to the human genome (hg38 ...
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bioRxiv - Cell Biology 2024Quote: ... while MultiQC (v1.7; Illumina) handled the overall data quality evaluation.
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bioRxiv - Cell Biology 2024Quote: ... The RTA and NCS (1.8.0; Illumina) managed base calling ...
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bioRxiv - Developmental Biology 2024Quote: ... The integrity of the CRISPRi library was validated by Illumina Miseq through Cornell Genomics Facility (detailed library preparation steps are presented below in “Library validation and CRISPRi dropout screening”).
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bioRxiv - Developmental Biology 2024Quote: ... a shallow sequencing run was performed on a NextSeq 500 (Illumina) prior to deep sequencing on a NovaSeq S4 (Illumina) ...
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bioRxiv - Cell Biology 2024Quote: ... RNA libraries were prepared using the TruSeq Stranded Total RNA method according to the manufacturers instructions (Illumina). Qubit values were taken of the final library and the nM concentration was calculated based on the concentration and base pair size with initial library concentrations ranging from 33.7-40.5 ng/ul.
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bioRxiv - Cell Biology 2024Quote: ... Libraries were prepared using the Illumina TruSeq Stranded mRNA sample prep kit according to manufacturer’s instructions and sequencing was performed on Illumina NovaSeq 6000 (Illumina, Cambridge, U.K.) with 75pb paired-end reads at the University of Warwick Genomics Facility (Warwick ...
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bioRxiv - Cell Biology 2024Quote: ... and sequenced on NovaSeq instrument (Illumina) using 151bp paired-end reads ...
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bioRxiv - Cell Biology 2024Quote: ... The reads were demultiplexed into FASTQ files using the BCL Convert Conversion Software (Illumina, v4) and the adapters were trimmed using Cutadapt v2.3 39 ...
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bioRxiv - Immunology 2024Quote: ... followed by 35–base pair (bp) paired-end sequencing on a NextSeq 500 instrument (Illumina). Five million to 10 million reads were obtained from each sample and reads were analyzed as detailed below ...
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bioRxiv - Immunology 2024Quote: ... Two arrays were sequenced per sequencing run with an Illumina 75 Cycle NextSeq500/550v2 kit (Illumina FC-404–2005) at a final concentration of 2.4 pM ...
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bioRxiv - Immunology 2024Quote: ... Libraries were constructed using the Nextera XT DNA tagmentation method (Illumina FC-131–1096) on a total of 750 pg of pooled cDNA library from 16,000 recovered beads using index primers with format as previously described [49] ...
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bioRxiv - Immunology 2024Quote: ... Gene expression and surface protein libraries were generated using the Chromium Next GEM Single Cell 3 ’Reagent Kits v3.1 and sequenced by Illumina MiSeq or NextSeq2000 ...
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bioRxiv - Immunology 2024Quote: ... Sequencing data were demultiplexed using the bcl2fastq2 Conversion Software (v. 2.20, Illumina) and primary data analysis performed with the Cell Ranger Gene Expression pipeline (version 7.1.0 ...
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bioRxiv - Immunology 2024Quote: ... The 10nM library was denatured and further diluted prior to loading on the NovaSeq6000 sequencing platform (Illumina, v1.5 chemistry ...
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bioRxiv - Immunology 2024Quote: ... Briefly 50,000 BMDMs per sample were lysed to collect nuclei and treated with Tn5 transposase (Illumina) for 30 min at 37°C with gentle agitation ...
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bioRxiv - Immunology 2024Quote: ... and unique dual indexes (Illumina). The ATAC-seq library amplification was confirmed by real-time PCR ...
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bioRxiv - Immunology 2024Quote: ... and library preparation was performed using a TruSeq-stranded mRNA sample prep kit (Illumina, San Diego, CA, USA) according to the manufacturer’s instructions ...
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bioRxiv - Immunology 2024Quote: ... and sequenced on Novaseq 6000 platform (Illumina). TCR sequences were pre-processed as previously described (20) ...
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bioRxiv - Immunology 2024Quote: ... The products were then purified and enriched by PCR using paired-end primers (Illumina) for 15 cycles to create the final cDNA library ...
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bioRxiv - Immunology 2024Quote: ... RNA-seq libraries were prepared using the TruSeq Stranded mRNA Kit (Illumina) following the manufacturer’s instructions ...
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bioRxiv - Immunology 2024Quote: ... Libraries were sequenced by Edinburgh Genomics using a NovaSeq 6000 sequencing system (Illumina®, San Diego, USA). Initial processing was performed using Cellranger (v2.1.1 ...
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bioRxiv - Microbiology 2024Quote: ... total RNA from mouse gut or human donors was subjected to ribosomal RNA depletion by Ribo-Zero Plus Microbiome rRNA Depletion Kit (Illumina) and cDNA libraries were generated by using Illumina Stranded Total RNA Prep (Illumina ...
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bioRxiv - Microbiology 2024Quote: ... Sequencing was performed on an Illumina NovaSeq 6000 instrument using the NovaSeq 6000 S1 Reagent Kit v1.5 (200 cycles) (Illumina, cat. no. 20028317), in a pair-end 2x100 cycle mode ...
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bioRxiv - Microbiology 2024Quote: ... and cDNA libraries were generated by using Illumina Stranded Total RNA Prep (Illumina) following manufacturer’s instructions.
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bioRxiv - Microbiology 2024Quote: ... using the standard procedure recommended by the manufacturer with a 0.5% addition of the PhiX control library (Illumina, cat. no. FC-110-3001).
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bioRxiv - Immunology 2024Quote: Library preparation was performed starting from 200ng total RNA of each sample using the TruSeq Stranded mRNA Library Kit (Illumina, cat. # 20020595) and the TruSeq RNA UD Indexes (Illumina ...
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bioRxiv - Immunology 2024Quote: ... and the TruSeq RNA UD Indexes (Illumina, cat. # 20022371). Gene set enrichment analysis was performed with the function camera from the edgeR package[58] (using the default parameter value of 0.01 for the correlations of genes within gene sets ...
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bioRxiv - Microbiology 2024Quote: ... and TruSeq DNA UD Indexes adapters (Illumina, cat. no. 20020590) according to the manufacturer’s recommendations ...