Labshake search
Citations for Illumina :
951 - 1000 of 10000+ citations since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Evolutionary Biology 2024Quote: ... and short (Illumina) read sequencing ...
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bioRxiv - Evolutionary Biology 2024Quote: ... The library was sequenced on NovaSeq 6000 (Illumina) with a read length of 2×151 bp ...
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Multiple horizontal mini-chromosome transfers drive genome evolution of clonal blast fungus lineagesbioRxiv - Evolutionary Biology 2024Quote: ... Sequencing of mini-chromosomal DNA libraries was carried out on a NextSeq500 system (Illumina). For whole-genome sequencing and de novo assembly generation of the Br62 isolate ...
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bioRxiv - Evolutionary Biology 2024Quote: ... and the pool was sequenced on the Illumina NovaSeq 6000 (Illumina, CA, USA) on one lane of a NVS300S4 flowcell with v1.5 chemistry producing a total of 3,370,873,981 reads.
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bioRxiv - Evolutionary Biology 2024Quote: ... NGS libraries were constructed from genomic DNA using the Nextera protocol34 and the Illumina NextSeq 500 platform with 2 x 151 bp runs (Illumina, San Diego, CA, USA). We additionally sequenced with PacBio long-read sequencing on an RSII instrument (Pacific Biosciences ...
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bioRxiv - Evolutionary Biology 2024Quote: ... Mitochondrial genomes for all individuals in the sister-species dataset were extracted directly from Illumina reads with GetOrganelle v1.7.5.3 (Jin et al ...
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Multiple horizontal mini-chromosome transfers drive genome evolution of clonal blast fungus lineagesbioRxiv - Evolutionary Biology 2024Quote: ... DNA was eluted from gel plugs and sequencing libraries were prepared using a modified version (custom barcodes) of the Nextera Flex library preparation kit (Illumina). Sequencing of mini-chromosomal DNA libraries was carried out on a NextSeq500 system (Illumina) ...
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bioRxiv - Evolutionary Biology 2024Quote: ... Libraries were individually created for each clone following a modified Nextera XT DNA Library Prep Kit protocol (Illumina). Tagmentation and amplification was carried out at one-quarter volume with Nextera XT Index Kit v2 adapters ...
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bioRxiv - Genomics 2024Quote: ... The RNA- seq libraies were sequenced by NovaSeq 6000 (Illumina) to either 2 x 50 bp or 2 x 150 bp reads.
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bioRxiv - Genomics 2024Quote: Methylation analysis was conducted using the Illumina Infinium chemistry.43 DNAm levels across ∼850,000 CpG sites were measured using the Infinium Methylation EPIC BeadChip (Illumina, Inc.; San Diego, CA). Beta values for CpG sites across the genome were measured according to kit protocols and filtered to remove polymorphic positions ...
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bioRxiv - Genomics 2024Quote: ... was used for a tagmentation reaction that included 3 µL of 2X TMP buffer and 0.5 µL of Transposome (BLT; CAT # 20015880, Illumina Inc.), incubated in a thermocycler at 53 ℃ for 30 minutes with the lid set at 80 ℃ ...
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bioRxiv - Genomics 2024Quote: ... The ChIA-PET libraries were sequenced with 150 bps long paired-end reads using NovaSeq 6000 instrument (Illumina).
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bioRxiv - Genomics 2024Quote: ... Libraries were prepared using the tagment DNA Enzyme and Buffer Large Kit (Illumina), and size-selected libraries (300-500 bp ...
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bioRxiv - Immunology 2024Quote: ... The 150-bp paired-end sequencing was done with a HiSeq X Ten (Illumina). gRNA sequences were extracted and analysed with the CaRpools package (https://github.com/boutroslab/carpools) ...
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bioRxiv - Immunology 2024Quote: ... Live purified CD4+ T cells were processed using OMNI-ATAC protocol and libraries sequenced using NextSeq 500 sequencer (Illumina).
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bioRxiv - Immunology 2024Quote: ... the antibody barcode library was pooled at a ratio of 1:5 with the gene expression library and sequenced on a NextSeq 2000 (Illumina) to an average depth of 34,000 reads per cell.
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bioRxiv - Immunology 2024Quote: ... then sequenced using Hi-seq 4000 sequencer (Illumina).
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bioRxiv - Immunology 2024Quote: ... With the aid of a Nextera XT DNA Library Preparation Kit (Illumina), first-strand cDNA was subjected to limited PCR amplification followed by transposon-based fragmentation ...
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bioRxiv - Immunology 2024Quote: ... transposition reaction was done with 350 rpm mixing and using the transposase from the Illumina Tagment DNA TDE1 Enzyme and Buffer Kit (Illumina, San Diego, CA, USA). Libraries were quantified using KAPA Library Quantification kit (Roche ...
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bioRxiv - Genomics 2024Quote: ... Sequencing was performed using Illumina Miseq (Illumina Inc.). A reference-based genome assembly was conducted using the ViralFlow 1.0 pipeline (Dezordi et al. ...
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bioRxiv - Genomics 2024Quote: ... Unique dual indexes (cat# 20022371, Illumina) were used ...
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bioRxiv - Genomics 2024Quote: ... gDNA from Illumina short-read sequencing (gDNA ILMN ...
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bioRxiv - Genomics 2024Quote: ... The sequencing library was prepared with 1 μg of DNA using the TruSeq PCR-free DNA sample preparation kit (cat# 20015962, Illumina), according to the TruSeq DNA PCR-free Reference Guide ...
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bioRxiv - Genomics 2024Quote: ... and sequenced using a NovaSeq 6000 (Illumina, San Diego, CA) with 150 bp paired-end reads ...
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bioRxiv - Genomics 2024Quote: ... Bulk libraries were sequenced on the Nova-seq platform (Illumina) using a 100-cycle kit 483 (Read 1 ...
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bioRxiv - Genomics 2024Quote: ... The library was sequenced on a NovaSeq 6000 system (Illumina), with paired-end 150 bp read lengths ...
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bioRxiv - Genomics 2024Quote: ... using unique dual indexes (cat# 20022370, Illumina) and targeting an insert size of 350 bp ...
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bioRxiv - Genomics 2024Quote: ... The final libraries were sequenced on a HiSeq Xten platform with paired-end mode (Illumina, San Diego, CA, USA). After trimming using fastp64 (v0.23.1) ...
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bioRxiv - Genetics 2024Quote: ... Libraries were denatured and diluted to 10 pM according before loading on MiSeq (Illumina) for next generation sequencing ...
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bioRxiv - Genetics 2024Quote: ... using Nextera (Illumina) reagents scaled to small volume reactions (Vonesch et al ...
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bioRxiv - Genetics 2024Quote: ... Nextera XT DNA Library Preparation (Illumina, FC-131-1096) was carried out according to the manufacturer protocol ...
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bioRxiv - Genetics 2024Quote: ... Small RNA libraries were prepared from ∼20–45 nt total RNAs using Small RNA Library Preparation kit (Illumina) and analyzed by Illumina HiSeq 2500 platform.
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bioRxiv - Genetics 2024Quote: The Infinium Human Methylation EPIC BeadChip (Illumina, USA) array was performed according to manufacturer’s instructions ...
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bioRxiv - Genetics 2024Quote: ... The final libraries were sequenced on a NovaSeq 6000 System (Illumina) for 150 bp pair-end reads ...
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bioRxiv - Genetics 2024Quote: ... and analyzed by Illumina HiSeq 2500 platform.
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bioRxiv - Genomics 2024Quote: ... The trimmed reads were mapped separately to our reference genome using the tool bwa mem (-M-R’@RG\tID:$Population\tSM:$Individual\tPL:ILLUMINA’, v0.7.17, Li 2013). Low quality alignments were removed using samtools (-q 30-f 0×0002-F 0×0004-F0×0008 ...
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bioRxiv - Genetics 2024Quote: ... The DNA was sequenced with a NextSeq 550 using a NextSeq 550 High output 75 cycle or Mid output 150 cycle kit (Illumina).
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bioRxiv - Developmental Biology 2024Quote: ... The cell pellet was resuspended in transposition reaction mix (12.5 μl TD-Buffer, 1.25 μl Tn5, 11.25 μl water) (Nextera DNA Library Prep Kit, Illumina, Cat# 15028212) and incubated for 30 min at 37°C ...
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bioRxiv - Developmental Biology 2024Quote: Total RNA was sent to the Cologne Center for Genomics (CCG) for library preparation (Illumina Stranded TruSeq) and sequencing on the NovaSeq 6000 with a read length of 101 bp.
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bioRxiv - Developmental Biology 2024Quote: ... Amplification was carried out using 3 µl of NMP per sample and adding 1 µl of each dual-indexed (i7 and i5; Illumina) primer ...
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bioRxiv - Developmental Biology 2024Quote: ... cDNA was normalised to 0.2 ng/μL before Nextera (Illumina, San Diego, CA, USA) library preparation in a total reaction volume of 4 μL ...
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bioRxiv - Developmental Biology 2024Quote: ... Approximately 1 ng of cDNA per cell was transformed into a single-cell library using the Nextera XT DNA Library prep kit (Illumina FC-131-1096) and following the manufacturer’s instructions with slight modifications ...
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bioRxiv - Developmental Biology 2024Quote: ... Another cleanup step with SPRIselect was performed before the Sample Index PCR when P5 and P7 sequences (for Illumina sequencing) and sample indices (to allow for multiplexing in the sequencer ...
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bioRxiv - Genetics 2024Quote: ... according to manufacturer’s protocols (Illumina Inc.). Quality control for individual and variant data was completed as previously described (https://github.com/neurogenetics/GWAS-pipeline) ...
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bioRxiv - Developmental Biology 2024Quote: ... Sequencing was done using NovaSeq v1.5 STD (Illumina protocol #1000000106351 v03) for around 100,000 reads per cell ...
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bioRxiv - Developmental Biology 2024Quote: ... library construction was immediately carried out using a Chromium Single Cell 3’ Reagent Kit (Version 3) and sequenced on an Illumina HiSeq 4000 or an Illumina NextSeq2000 (Illumina, cat no. 20040559) by the Technion Medicine Faculty Azrieli-Technion Genomics Center ...
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bioRxiv - Developmental Biology 2024Quote: ... Poly-dT pull down enrichment of mRNA was performed before sequencing 101 bp paired-end reads on an Illumina NovaSeq 6000 (Illumina), generating between 37 and 57 million read pairs per sample ...
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bioRxiv - Developmental Biology 2024Quote: ... and sequenced on a NovaSeq6000 instrument (Illumina).
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bioRxiv - Developmental Biology 2024Quote: ... libraries were prepared (TruSeq Stranded Total RNA kit from Illumina) and sequenced on a NovaSeq6000 instrument (Illumina).
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bioRxiv - Developmental Biology 2024Quote: ... using the Nextera XT kit (Illumina). Libraries were assessed by Tapestation and Bioanalyzer with a DNA High Sensitivity Chip ...