Labshake search
Citations for Illumina :
1051 - 1100 of 10000+ citations since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Developmental Biology 2024Quote: ... 75-nucleotide sequence reads generated by Illumina sequencing (NextSeq 500 ...
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bioRxiv - Developmental Biology 2024Quote: ... 25 million 2x100 bp reads were generated per sample on the Illumina NovaSeq 6000 system (Illumina Inc., San Diego, CA, USA). For this ...
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bioRxiv - Genetics 2024Quote: DNA methylation was assessed with the Infinium HumanMethylation450 BeadChip Kit (Illumina, San Diego, CA, USA) by the Human Genotyping facility (HugeF ...
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bioRxiv - Genetics 2024Quote: ... the libraries were diluted and sequenced in a sequencer HiSeq 2500 System (Illumina, Inc). The SNP calling was carried out following the pipeline TASSEL-GBS (Glaubitz et al ...
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bioRxiv - Genetics 2024Quote: ... on the NovaSeq platform (Illumina) After initial de-multiplexing by the Illumina platform ...
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bioRxiv - Genetics 2024Quote: ... Indexed libraries were pooled and sequenced (2*75 bp paired-end sequencing) on an Illumina NextSeq 500 platform (Illumina, USA).
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bioRxiv - Immunology 2024Quote: ... The RNA was fragmented and transformed into double-stranded cDNA libraries using the TruSeq RNA Sample Preparation Kit v2 (Illumina), following manufacturer’s protocol ...
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bioRxiv - Immunology 2024Quote: ... after cluster generation on a cBot station (Illumina). Raw sequencing reads underwent quality control with fastQC 0.11.9 (https://www.bioinformatics.babraham.ac.uk/projects/fastqc/ ...
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bioRxiv - Immunology 2024Quote: ... Sequencing was performed with 2 x 100 bp read length and 50 million clusters/probe on NovaSeq 6000 (Illumina). Normalization data was provided by CeGat ...
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bioRxiv - Immunology 2024Quote: ... The resulting pools were sequenced on a NovaSeq 6000 instrument (Illumina, San Diego, CA, USA) in 50 base pair paired-end configuration ...
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bioRxiv - Immunology 2024Quote: ... After centrifugation at 500ξ g for 5min at 4°C, the cell pellets were resuspended in tagmentation-mix (containing Tagment DNA buffer, Tagment DNA Enzyme (Illumina), Digitonin (Promega ...
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bioRxiv - Genetics 2024Quote: ... and barcoded using Nextera XT DNA Library Prep Kit (Illumina) per the manufacturer’s protocol ...
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bioRxiv - Genetics 2024Quote: ... PCR amplicons were gel-purified and sequenced on a NextSeq500 (Illumina). Screens were analyzed using Python (v.2.7.13) ...
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bioRxiv - Genetics 2024Quote: ... Raw data was processed with the software CASAVA v1.8.2 (Illumina, San Diego, California, USA) for both format conversion and demultiplexing ...
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bioRxiv - Genetics 2024Quote: ... Sequencing was carried out in paired-end mode (150 bp) by using NovaSeq 6000 (Illumina, San Diego, California, USA) with a targeted sequencing depth of 80 million reads per sample ...
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bioRxiv - Genetics 2024Quote: ... Primers were designed to amplify barcoded donor sequences on the plasmid pools to quantify strain abundance by Illumina sequencing with 2 × 150 bp reads (Novogene).
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bioRxiv - Genetics 2024Quote: The effects of SNVs on pre-mRNA splicing were predicted using the SpliceAI (Illumina, USA) (23) ...
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bioRxiv - Genetics 2024Quote: ... Sequencing was carried out in single-end mode (75 bp) by using NextSeq 500 (Illumina, San Diego, California, USA) with a targeted sequencing depth of 30 million reads per sample ...
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bioRxiv - Genomics 2024Quote: ... and sequenced on an Illumina MiSeq with a 150-cycle kit (Illumina MS-102-3001) with 75 cycles for each read and 8 cycles for each index ...
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bioRxiv - Genomics 2024Quote: ... The nuclei were resuspended in transposition reaction mix (2x TD Buffer (Illumina Cat #FC-121–1030, Nextera), 2.5 µl Tn5 Transposase (Illumina ...
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bioRxiv - Genomics 2024Quote: ... 2.5 µl Tn5 Transposase (Illumina, 20034197 Cat #FC-121–1030, Nextera) and Nuclease Free H2O ...
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bioRxiv - Genomics 2024Quote: ... and the Illumina TruSeq HT Library Preparation Kit (Illumina, Inc. San Diego, CA, USA) (Figure 2) ...
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bioRxiv - Genomics 2024Quote: ... Barcoded libraries were sequenced to a read depth of 20 million reads using the Novaseq 6000 (Illumina) to generate 100 base pair paired-end reads.
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bioRxiv - Immunology 2024Quote: ... Sequence libraries were multiplexed and sequencing was performed using a 2x 150 paired end configuration (Illumina HiSeq). Raw data files were converted to fastq files ...
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bioRxiv - Immunology 2024Quote: ... DNA whole-exome sequencing (WES, Illumina platform) and mRNA expression arrays (Human U133 Plus2.0 ...
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bioRxiv - Genomics 2024Quote: Chicago and Hi-C libraries were prepared by Dovetail Genomics (Dovetail Genomics, Scotts Valley, CA, USA) and sequenced at the Genoscope on a HiSeq 4000 instrument (Illumina, San Diego, CA, USA).
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bioRxiv - Genomics 2024Quote: ... A library was generated from pooled cDNAs and sequenced with a NovaSeq 6000 (Illumina). FASTQ files generated from each sequencing run were initially analyzed using the Cell Ranger v6.0.1 count pipeline ...
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bioRxiv - Genomics 2024Quote: ... RNA-seq libraries were prepared using the TruSeq Stranded mRNA Sample Prep (Illumina) according to the manufacturer’s protocol ...
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bioRxiv - Genomics 2024Quote: ... These libraries were sequenced with 150 bp paired-end reads on an Illumina HiSeq 4000 or NovaSeq 6000 instrument (Illumina, San Diego, CA, USA).
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bioRxiv - Genomics 2024Quote: ... and paired-end sequenced (2 x 150 bp) on an Illumina HiSeq 4000 platform (Illumina, San Diego, CA, United States).
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bioRxiv - Genomics 2024Quote: ... and the final sequencing library was amplified utilizing the KAPA HiFi HotStart Uracil+ ReadyMix PCR Kit along with index primers from the Nextera XT Index Kit (Illumina, FC-131-1001). The amplification protocol involved an initial step at 98°C for 45 seconds ...
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bioRxiv - Genomics 2024Quote: ... and then sequenced using an Illumina NovaSeq6000 sequenator (Illumina, USA).
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bioRxiv - Genomics 2024Quote: ... HiSeq 4000 or NovaSeq 6000 instruments (Illumina, San Diego, CA, USA) in paired-end mode ...
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bioRxiv - Genomics 2024Quote: ... before carrying out the Tn5 transposase reaction with Illumina Tagment DNA TDE1 enzyme (37°C, 30 min, 1000 RPM, Illumina) following the standard “OmniATAC protocol” (Corces et al. ...
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bioRxiv - Genomics 2024Quote: ... Single cell libraries were sequenced on the Nova-seq platform (Illumina) using a 200-cycle kit (Read 1 ...
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bioRxiv - Genomics 2024Quote: mRNA sequencing libraries were prepared from 500 ng total RNA using the TruSeq stranded mRNA library preparation kit (cat# 20020595, Illumina) according to manufacturer’s protocol ...
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bioRxiv - Genomics 2024Quote: ... with IDT for Illumina UD Indexes (96x, Plate A, Set 1, Illumina). Library size selection was performed to remove fragments below 180 bp and above 700 bp using AMPure XP beads (Beckman coulter) ...
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bioRxiv - Genomics 2024Quote: ... The libraries were sequenced on a NovaSeq 6000 system (Illumina), with paired-end 150 bp read lengths ...
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bioRxiv - Immunology 2024Quote: ... PCR was performed using 4 µL of each sample and the oligos from each ROI were indexed using unique i5 and i7 dual-indexing systems (Illumina). PCR reactions were purified twice using AMPure XP beads (Beckman Coulter ...
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Recurrent loss of crossover interference punctuates the recombination landscape across yeast speciesbioRxiv - Genomics 2024Quote: ... A combination of 48 i7 oligos (NEBNext Multiplex Oligos for Illumina, NEB) and 24 i5 oligos (Microsynth ...
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bioRxiv - Genomics 2024Quote: ... followed by enzymatic fragmentation and application of the samples to BeadChips (Illumina). The arrays were fluorescently stained and scanned ...
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bioRxiv - Genomics 2024Quote: ... Hi-C libraries for scaffolding were generated and sequenced by Arima Genomics (200.48 million PE 150-bp reads; Illumina NovaSeq; Arima Genomics, USA). To aid gene annotation ...
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bioRxiv - Genomics 2024Quote: ... 2nM pools for each kit were prepared for sequencing on a NextSeq 2000 (Illumina) according to the manufacturer’s instructions and sequenced to ∼0.5X coverage per sample.
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bioRxiv - Genomics 2024Quote: ... DNA Prep (Illumina, 20060059), the library prep kit from IDT ...
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bioRxiv - Genomics 2024Quote: ... Ligation (Illumina, San Diego, USA), according to manufacturer’s instructions ...
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bioRxiv - Genomics 2024Quote: ... Miniaturization involved testing libraries at 1/6th (IDT mini) or 1/8th (Roche mini, Illumina mini) of reaction volume tailoring input DNA to each kit between 24-45 ng total (Table 2) ...
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bioRxiv - Genomics 2024Quote: ... We also generated 545.60 million paired-end (PE) 151-bp reads (Illumina NovaSeq ...
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bioRxiv - Genomics 2024Quote: ... Sequencing was performed on the NextSeq500 machine (Illumina). For RRBS ...
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bioRxiv - Genomics 2024Quote: ... using a 100-cycle S2 Kit or NextSeq2000 (Illumina) using a 100-cycle P3 kit (ATAC ...
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bioRxiv - Genomics 2024Quote: ... Paired-end reads of 150 bp were generated using TruSeq RNA Access sequencing chemistry on HiSeq X instrument (Illumina, San Diego, CA) by an external service provider (Macrogen Europe ...