Labshake search
Citations for Illumina :
1351 - 1400 of 10000+ citations since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Evolutionary Biology 2024Quote: ... Construction of DNA libraries was performed by the Michigan Department of Health and Human Services using the Nextera XT library prep kit (Illumina, San Diego, CA, USA) followed by sequencing on the MiSeq (Illumina ...
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bioRxiv - Evolutionary Biology 2024Quote: ... RNA-Seq evidence was provided by Illumina paired-end and single-end RNA-seq ...
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bioRxiv - Evolutionary Biology 2024Quote: ... The RNA-seq protocols of fat and diencephalon tissues were based on the methods of rRNA-depletion and strand-specific RNA-seq provided by Illumina (Illumina, San Diego, CA). The sequencing for CUT&Tag and RNA-seq was performed with the Illumina NovaSeq6000 (PE150 ...
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bioRxiv - Developmental Biology 2024Quote: ... pair-end sequencing was performed on the Illumina platform (Illumina, CA, USA).
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bioRxiv - Evolutionary Biology 2024Quote: ... on a 2x150 bp SP line on an Illumina NovaSeq sequencer (Illumina, San Diego, CA, USA) at the GenomiX platform in Montpellier ...
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bioRxiv - Developmental Biology 2024Quote: ... The DNA extracted from these samples was used for subsequent library construction using the TruSeq Nano DNA LT Library Preparation Kit (Illumina Inc., USA) whose purity and size were validated using an Agilent Bioanalyzer 2100 (Agilent Technologies ...
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bioRxiv - Developmental Biology 2024Quote: ... and sequenced using a Hiseq 1500 (Illumina) to obtain 2 × 127 base-pair (bp ...
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bioRxiv - Developmental Biology 2024Quote: ... cDNA library preparation and sequencing (Illumina Novaseq SP, 2 × 50 bp read length). Differential expression was filtered by selecting transcripts with fold change ≥ |1.5| and a significance level of P ≤ 0.05 using PartekFlow.
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bioRxiv - Genomics 2024Quote: ... Equimolar pooling of libraries was performed based on QC values and sequenced on an Illumina® NovaSeq S4 (Illumina, California, USA) with a read length configuration of 150 PE for 50 M PE reads per sample (25M in each direction).
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bioRxiv - Immunology 2024Quote: ... and a sequencing library was created with the Nextera XT method (FC-131-1096, Illumina). Libraries were sequenced on Illumina HiSeq4000 and resulting reads were aligned to ensembl build GRCm38.78 with STAR (v2.4.2a) ...
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bioRxiv - Genetics 2024Quote: ... Ribosomal RNA was depleted from samples using Ribo-Zero Plus rRNA Depletion Kit (Illumina) and purified using RNA Clean & Concentrator - 5 Kit ...
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bioRxiv - Genomics 2024Quote: ... it enables the observation of all variable sequence elements (spacers, iBARs, and the middle tRNA) with 150-cycle sequencing kits (e.g. Illumina MS-102-3001) and positions spacers and iBARs as early as possible within NGS reads ...
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bioRxiv - Genetics 2024Quote: ... Sequencing was conducted on a Nextseq instrument (Illumina Inc.) according to the manufacturer’s instructions ...
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bioRxiv - Genetics 2024Quote: ... RNA-Seq libraries were generated using the TruSeq RNA Sample Prep Kit (Illumina, San Diego, CA). Low-quality bases were trimmed using Trim-galore ...
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bioRxiv - Genomics 2024Quote: ... Sequencing was performed on an Illumina® NovaSeq (Illumina, California, USA) with a read length configuration of 150 PE for 40M PE reads 20M in each direction ...
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bioRxiv - Genomics 2024Quote: DRAGEN (Dynamic Read Analysis for GENomics) is a bioinformatics platform developed by Illumina that is designed to accelerate and improve the analysis of genomic sequencing data ...
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bioRxiv - Genomics 2024Quote: ... We evaluated all the SV call sets based on HG002 only using Witty.er (v0.3.5.1) with default config file provided in github repo (https://github.com/Illumina/witty.er) and -em SimpleCounting parameters ...
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bioRxiv - Genomics 2024Quote: The DRAGEN Structural Variant (SV) Caller is designed to detect structural variants (SV) and indel calls (50bp or larger by default) from Illumina data ...
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bioRxiv - Genomics 2024Quote: The chromatin conformation capture (Hi-C) fragment libraries were constructed from 300-700 bp insert size and were measured by Illumina platform for auxiliary assembly (Rao et al. ...
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bioRxiv - Genomics 2024Quote: ... R2:75 cycles” on a NextSeq 500 sequencer (Illumina, San Diego, CA).
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bioRxiv - Genomics 2024Quote: ... The samples had been sequenced using either the Illumina HiSeq 2500 platform using the HiSeq Rapid SBS Kit v2 500-cycles (Illumina) or the MiSeq platform (Illumina ...
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bioRxiv - Genomics 2024Quote: ... 4.5 µl of sample were used to generate single cell RNA-Seq libraries by following the Illumina Bio-Rad SureCell WTA 3’ Library Prep Guide (Illumina, San Diego CA and Bio-Rad ...
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bioRxiv - Genomics 2024Quote: ... or the MiSeq platform (Illumina) using the MiSeq Reagent Kit v2 500-cycles (Illumina) ...
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bioRxiv - Genomics 2024Quote: ... using the MiSeq Reagent Kit v2 500-cycles (Illumina). All isolates included in this study are summarised in Supplementary Table 1.
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bioRxiv - Genetics 2024Quote: ... Libraries for next-generation sequencing were prepared and sequenced with a NovaSeq 6000 instrument (Illumina). Quality of received raw data files was assessed with FastQC and data under quality threshold was removed using Trimmomatic (29) ...
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bioRxiv - Genetics 2024Quote: Total RNA sequencing was performed by a pair-end strategy for all samples using Novaseq PE150 (Illumina Inc). Raw data is stored in .fastq format (.fq.gz compressed ...
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The transcriptomic landscape of monosomy X (45,X) during early human fetal and placental developmentbioRxiv - Genetics 2024Quote: ... Libraries were subsequently sequenced on a NovaSeq S2 Flowcell (paired end 2×56bp) (Illumina). All samples in this study were prepared and sequenced at the same time ...
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bioRxiv - Genetics 2024Quote: ... the high-quality DNA was used to construct a paired-end library (150 bp × 2) and sequenced by Illumina X Ten platform according to standard protocol ...
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bioRxiv - Genomics 2024Quote: Whole blood DNA methylation was profiled using the Infinium MethylationEPIC BeadChip (Illumina Inc.) in two sets of GS participants at two separate times by the Wellcome Trust Clinical Research Facility ...
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bioRxiv - Genetics 2024Quote: ... * indicates a phosphorothioate (PTO) linked base) were added and the amplicons were sequenced on the MiSeq system (Illumina). FASTQ sequencing files were analyzed using the branch 1.1 version [50] of a previously described analysis pipeline (https://github.com/rajchari2/ngs_amplicon_analysis) ...
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bioRxiv - Genomics 2024Quote: ... and size-selected libraries (300-500 bp) were sequenced by 1x 50bp single reads using NovaSeq 6000 instrument (Illumina). Antibodies used for ChIP-Seq are listed in the Key Resources Table.
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bioRxiv - Genomics 2024Quote: ... Paired-end (150-bp) sequencing of each library (approx. 20 million reads per library) was then performed on the NextSeq 550 platform (Illumina). All library preparation and sequencing procedures were carried out by the Analytical Facility at QIMRB.
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bioRxiv - Evolutionary Biology 2024Quote: ... The amplified library was sequenced on NovaSeq 6000 (Illumina) with a read length of 2×151 bp.
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bioRxiv - Evolutionary Biology 2024Quote: ... (Seoul, South Korea) using TruSeq DNA PCR-Free Protocol (Illumina, San Diego, CA) and genome sequencing was performed with the Illumina HiSeq 2000 platform in pair-end mode (2×151bp) ...
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bioRxiv - Evolutionary Biology 2024Quote: ... Samples were subjected to Illumina’s TruSeq Stranded mRNA library preparation kit and sequenced on NovaSeq 6000 (Illumina, 2×151 bp). In total ∼127 million reads were generated.
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bioRxiv - Evolutionary Biology 2024Quote: Raw paired reads from Illumina metagenomic data from each sample were merged into a single interleaved file using the reformat.sh script from the BBMap/BBTool package (https://github.com/BioInfoTools/BBMap/blob/master/sh/reformat.sh) ...
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bioRxiv - Evolutionary Biology 2024Quote: ... and short (Illumina) read sequencing ...
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bioRxiv - Evolutionary Biology 2024Quote: ... The library was sequenced on NovaSeq 6000 (Illumina) with a read length of 2×151 bp ...
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Multiple horizontal mini-chromosome transfers drive genome evolution of clonal blast fungus lineagesbioRxiv - Evolutionary Biology 2024Quote: ... Sequencing of mini-chromosomal DNA libraries was carried out on a NextSeq500 system (Illumina). For whole-genome sequencing and de novo assembly generation of the Br62 isolate ...
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bioRxiv - Evolutionary Biology 2024Quote: ... and the pool was sequenced on the Illumina NovaSeq 6000 (Illumina, CA, USA) on one lane of a NVS300S4 flowcell with v1.5 chemistry producing a total of 3,370,873,981 reads.
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bioRxiv - Evolutionary Biology 2024Quote: ... NGS libraries were constructed from genomic DNA using the Nextera protocol34 and the Illumina NextSeq 500 platform with 2 x 151 bp runs (Illumina, San Diego, CA, USA). We additionally sequenced with PacBio long-read sequencing on an RSII instrument (Pacific Biosciences ...
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bioRxiv - Evolutionary Biology 2024Quote: ... Mitochondrial genomes for all individuals in the sister-species dataset were extracted directly from Illumina reads with GetOrganelle v1.7.5.3 (Jin et al ...
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Multiple horizontal mini-chromosome transfers drive genome evolution of clonal blast fungus lineagesbioRxiv - Evolutionary Biology 2024Quote: ... DNA was eluted from gel plugs and sequencing libraries were prepared using a modified version (custom barcodes) of the Nextera Flex library preparation kit (Illumina). Sequencing of mini-chromosomal DNA libraries was carried out on a NextSeq500 system (Illumina) ...
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bioRxiv - Evolutionary Biology 2024Quote: ... Libraries were individually created for each clone following a modified Nextera XT DNA Library Prep Kit protocol (Illumina). Tagmentation and amplification was carried out at one-quarter volume with Nextera XT Index Kit v2 adapters ...
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bioRxiv - Genomics 2024Quote: ... The RNA- seq libraies were sequenced by NovaSeq 6000 (Illumina) to either 2 x 50 bp or 2 x 150 bp reads.
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bioRxiv - Genomics 2024Quote: Methylation analysis was conducted using the Illumina Infinium chemistry.43 DNAm levels across ∼850,000 CpG sites were measured using the Infinium Methylation EPIC BeadChip (Illumina, Inc.; San Diego, CA). Beta values for CpG sites across the genome were measured according to kit protocols and filtered to remove polymorphic positions ...
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bioRxiv - Genomics 2024Quote: ... was used for a tagmentation reaction that included 3 µL of 2X TMP buffer and 0.5 µL of Transposome (BLT; CAT # 20015880, Illumina Inc.), incubated in a thermocycler at 53 ℃ for 30 minutes with the lid set at 80 ℃ ...
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bioRxiv - Genomics 2024Quote: ... The ChIA-PET libraries were sequenced with 150 bps long paired-end reads using NovaSeq 6000 instrument (Illumina).
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bioRxiv - Genomics 2024Quote: ... Libraries were prepared using the tagment DNA Enzyme and Buffer Large Kit (Illumina), and size-selected libraries (300-500 bp ...
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bioRxiv - Evolutionary Biology 2024Quote: ... and then sequenced using a Miniseq (Illumina). For CF269 communities ...