Labshake search
Citations for Illumina :
7951 - 8000 of 10000+ citations since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Immunology 2023Quote: ... Total RNA samples (200-500 ng) were hybridized with Ribo-Zero Plus (Illumina) to deplete cytoplasmic and mitochondrial and ribosomal RNA from samples ...
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bioRxiv - Developmental Biology 2023Quote: ... Demultiplexing was performed with Illumina Bcl2fastq2 program (version 2.19.1.403; Illumina Inc.).
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bioRxiv - Plant Biology 2023Quote: ... the Illumina HiSeq 1000 System User Guide (Illumina), and the KAPA Library Quantification Kit-Illumina/ABI Prism User Guide (Roche) ...
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bioRxiv - Neuroscience 2023Quote: ... RNA-Seq libraries were subsequently prepared with the TruSeq Stranded mRNA Sample Prep Kit (Illumina) and subjected to 125 bp paired-end sequencing using a HiSeq2500 (Illumina) ...
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bioRxiv - Physiology 2023Quote: ... Paired-end sequencing of 100 bp was performed on an NovaSeq 6000 system (Illumina, Inc.). Quality control metrics of raw sequencing reads were performed with FastQC version 0.11.7 ...
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bioRxiv - Neuroscience 2023Quote: ... followed by genome-wide genotyping using the Global Screening Array (Illumina, Inc., San Diego, CA). For a full description of genotyping ...
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bioRxiv - Physiology 2023Quote: ... A second round of PCR was performed with 50 ng DNA input for 8 cycles to attach Nextera XT indices and adapters using the Illumina Nextera XT Index Kit (Illumina, Catalog #FC-131-200x) and Phusion HF PCR master mix (Thermo Fisher Scientific ...
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bioRxiv - Systems Biology 2023Quote: Raw reads were demultiplexed from BCL into FASTQ files using bcl2fastq (Illumina) with run-appropriate settings and indexing run sheet ...
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bioRxiv - Plant Biology 2023Quote: ... together with a wild type (WT) plant were whole genome sequenced with an Illumina sequencer (Illumina Inc., San Diego, USA). One μg of DNA was used to prepare short insert (length 350 bp ...
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bioRxiv - Plant Biology 2023Quote: ... utilizing indexes from TruSeq DNA UD indexes for Illumina (Illumina). Finally ...
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bioRxiv - Plant Biology 2023Quote: ... DNA fragments were sequenced on an Illumina HiSeq 2500 sequencer (Illumina, San Diego, CA, USA) using the paired-ended mode (2 × 100 bp ...
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bioRxiv - Plant Biology 2023Quote: ... 1 µg DNA from all the samples was used to prepare sequencing libraries with TruSeq Nano DNA HT Sample Preparation Kit (Illumina, USA) and qualified libraries were sequenced on the Illumina HiSeq2500 platform to obtain 2x150 bp reads at approximately 40x coverage ...
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bioRxiv - Plant Biology 2023Quote: The generation of FASTQ files from the RNA-Seq sequences was performed by CASAVA software v1.8.2 (Illumina Inc.). Sequence reads were filtered and trimmed for low quality at a score of 20 using Sickle v1.33 41 ...
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bioRxiv - Plant Biology 2023Quote: ... PolyA-enriched mRNA libraries were prepared from three biological replicates of dark and light samples using the TruSeqTM RNA Sample Preparation Kits (v2) and sequenced as 51-bp single-end reads using the Illumina HiSeq 2000 instrument (Illumina Inc., USA) according to the manufacturer’s protocol at the Center for Genomic Research and Biocomputing ...
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bioRxiv - Plant Biology 2023Quote: ... Bcl files obtained from image analyses and base calling were converted into fastq files using the bcl2fastq v2.18 software (Illumina). Library construction and RNA-Seq were performed at the Regensburg University service facility KFB (Competence Center for Fluorescent Bioanalytics).
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bioRxiv - Plant Biology 2023Quote: ... Libraries were sequenced on a paired-end Illumina platform to generate 250bp paired-end raw reads (Illumina Novaseq ...
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bioRxiv - Systems Biology 2023Quote: They performed 2 × 50 bp paired-end sequencing on the NextSeq 2000 platform (Illumina Inc, #20038897) using NextSeq 1000/2000 P2 Reagents (100 cycles ...
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bioRxiv - Systems Biology 2023Quote: ... The data produced by the NextSeq 1000/2000 Control Software (Version 1.4.1.39716) was then automatically uploaded to BaseSpace (Illumina) and converted into FASTQ files.
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bioRxiv - Systems Biology 2023Quote: ... the library was submitted for sequencing on a single lane of the Illumina HiSeq 2500 System (Illumina, San Diego, CA) with the 50 bp single-end sequencing run type ...
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bioRxiv - Synthetic Biology 2023Quote: Sequencing of the mutagenic PCR fragments was done by NGS (Illumina). DNA samples were converted to Illumina sequencing libraries using Illumina’s Truseq NanoDNA Sample Preparation Kit (Cat ...
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bioRxiv - Plant Biology 2023Quote: ... and the extracted DNA was sequenced by Illumina paired-end 150 bp sequencing at the UC Davis Genome Center ...
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bioRxiv - Physiology 2023Quote: The TruSeq Stranded mRNA Sample Prep Kit (Illumina, Inc., San Diego, CA) was used to construct mRNA paired-end libraries ...
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bioRxiv - Physiology 2023Quote: ... Libraries were prepared using the Takara SMART-Seq v4 Ultra low input RNA kit and analyzed on a NovaSeq platform (Illumina) using paired-end (PE100/150 ...
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bioRxiv - Physiology 2023Quote: ... The mRNA-Seq libraries were prepared and sequenced by Novogene (Illumina, PE 150). The data were processed exactly as previously described [98] ...
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bioRxiv - Molecular Biology 2023Quote: ... or NovaSeq 6000 systems (all Illumina).
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bioRxiv - Microbiology 2023Quote: ... Library preparation was carried out with the Nextera XT DNA Library Prep kit (Illumina) following the manufacturer’s instructions ...
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bioRxiv - Molecular Biology 2023Quote: ... Paired end sequencing (2 x 150bp) was carried out on an Illumina Nextseq or Novaseq (Illumina).
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bioRxiv - Molecular Biology 2023Quote: ... Human Ribo-Zero rRNA depletion kit (Illumina). Paired-end 150+150 bp sequencing was performed at the Institute for Molecular Medicine Finland FIMM Genomics unit with Illumina NovaSeq 6000 using partial S4 flow cell lane ...
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bioRxiv - Molecular Biology 2023Quote: ... Libraries were sequenced using the NovaSeq 6000 platform (Illumina) to a depth of approximately 300 million reads per library with read lengths of 26 (read 1 ...
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bioRxiv - Molecular Biology 2023Quote: ... RNAseq libraries were constructed using Illumina TruSeq Stranded Total RNA kit (Illumina) Human Ribo-Zero rRNA depletion kit (Illumina) ...
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bioRxiv - Neuroscience 2023Quote: ... 100 bp runs on the Nextseq 2000 (Illumina) utilizing a pooling strategy that minimized batch effects from extraction ...
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bioRxiv - Neuroscience 2023Quote: ... the tagmented DNA was amplified using Illumina primers (NEBNext® Multiplex Oligos for Illumina, NEB #7335S) with the following cycling conditions ...
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bioRxiv - Neuroscience 2023Quote: ... Pooled libraries were sequenced on the Illumina NextSeq 500 platform using the High Output Kit v2.5 for 150 Cycles (Illumina, 20024907).
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bioRxiv - Neuroscience 2023Quote: ... and Illumina sequenced (150-nt pair-end sequencing; Illumina NovaSeq 6000).
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bioRxiv - Neuroscience 2023Quote: ... Transcriptome data were measured with Illumina HumanHT-12 V3 bead chips (Illumina, San Diego, CA, USA). Proteome data were measured by liquid chromatography-mass spectrometry (LC-MS/MS) ...
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bioRxiv - Cancer Biology 2023Quote: ... with the NovaSeq 6000 S4 Reagent Kit (Illumina). On average ...
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bioRxiv - Molecular Biology 2023Quote: ... using the HiSeq 3000/4000 SBS Kit (Illumina). An average of 27 million paired reads was generated per sample.
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bioRxiv - Molecular Biology 2023Quote: Alignment was generated in Dragen v3.10 (Illumina) against the hg38-alt-masked-v2 reference acquired from GENCODE v43 with default parameters ...
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bioRxiv - Molecular Biology 2023Quote: ... 50-500 ng of total RNA underwent polyA selection and TruSeq library preparation according to instructions provided by Illumina (TruSeq Stranded mRNA LT Kit ...
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bioRxiv - Microbiology 2023Quote: ... and sequenced on the Illumina MiSeq instrument (Illumina) as paired-end 2 X 250 base pair reads ...
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bioRxiv - Neuroscience 2023Quote: ... the TruSeq stranded RNA kit (Illumina Inc.) was used according to the manufacturer’s protocol ...
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bioRxiv - Evolutionary Biology 2023Quote: ... The pooled libraries were sequenced on an Illumina Miseq sequencer using Miseq Reagent V3 for 600 cycles (Illumina, San Diego, CA, USA). Raw reads were demultiplexed automatically on the Miseq.
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bioRxiv - Microbiology 2023Quote: ... as well as 6 PCR negative control and 3 extraction negatives on a NovaSeq 6000 (Illumina), with 2 Gb requested per sample.
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bioRxiv - Cancer Biology 2023Quote: ... Base calling was done by Illumina RTA3 and the output of NCS was demultiplexed and converted to FastQ format with Illumina Bcl2fastq v1.9.0 ...
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bioRxiv - Cell Biology 2023Quote: ... were used instead of the primers that came with the SMARTer Stranded Total RNA HI Mammalian kit to allow for sequencing on the NovaSeq (Illumina, San Diego, CA) by the Biopolymers Facility at Harvard Medical School.
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bioRxiv - Microbiology 2023Quote: ... genomic DNA was used to generate dual indexed Nextera-XT short-read sequencing libraries (Illumina). We sequenced these libraries in paired end format with 250 bp read length ...
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bioRxiv - Cell Biology 2023Quote: ... Libraries were sequenced on the NextSeq (Illumina, San Diego, CA) by the Biopolymers Facility at Harvard Medical School.
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Mitigating a TDP-43 proteinopathy by targeting ataxin-2 using RNA-targeting CRISPR effector proteinsbioRxiv - Bioengineering 2023Quote: ... FASTQ files were generated and demultiplexed with the bcl2fastq v2.20 Conversion Software (Illumina). The quality of the demultiplexed FastQ files was evaluated using FastQC (version 0.11.8) ...
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bioRxiv - Developmental Biology 2023Quote: ... The Tn5 (Illumina FC-121-1030), and the transposition reaction was carried out for 30 min at 37°C ...
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bioRxiv - Developmental Biology 2023Quote: ... according to manufacturer’s instructions and sequenced with NextSeq 500 (Illumina, San Diego, CA) in the DNA Genomics and Sequencing core facility ...