Labshake search
Citations for Illumina :
6601 - 6650 of 10000+ citations since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Bioengineering 2023Quote: Total RNA samples (RIN > 8) were sequenced on HiSeq 1500 (Illumina Inc.) using HiSeqV2 Rapid chemistry according manufacturer’s instructions in Monash Health Translation Precinct RNA-Seq facility ...
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bioRxiv - Biochemistry 2023Quote: ... which were sequenced using NextSeq 500 (Illumina).
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bioRxiv - Genomics 2023Quote: ... Basecalling and de-multiplexing of indexed reads were performed by CASAVA version 1.8.2 (Illumina). De-multiplexed fastq files were trimmed to remove Illumina adapter sequences using Cutadapt version 1.2.1 (30) ...
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bioRxiv - Microbiology 2023Quote: The V3/V4 variable region of the 16S rRNA gene was amplified using primers 341F 5’CCTACGGGNGGCWGCAG′3 and 785R 5′GACTACHVGGGTATCTAATCC′3 (Klindworth et al., 2013 with Illumina Nextera XT overhang adapters for a dual-barcoding PCR library preparation approach ...
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bioRxiv - Microbiology 2023Quote: ... 2 × 1 μl (concentration of 10pmol/μl) MiSeq Nextera XT adapters (dual indexed, Illumina), and 6.5 μl of mQ water (Ultrapure) ...
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bioRxiv - Microbiology 2023Quote: ... The resulted pool of normalized DNA was cleaned one last time using magnetic beads at a ratio of 0.65:1 and thereafter sequenced at a commercial company (Baseclear, Leiden, The Netherlands) on the Illumina MiSeq platform using 2 × 300 bp paired-end sequencing (Illumina MiSeq PE300). Three negative control samples were included to detect possible contamination during library preparation and sequencing ...
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bioRxiv - Microbiology 2023Quote: ... PCR products were purified with AMPure XP purification kit and Sixteen-plexed samples were pooled in approximately equimolar amounts of 5 nM and run in a single and double index reads on a Hiseq 4000 (Illumina).
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bioRxiv - Molecular Biology 2023Quote: ... The TruSeq RNA Sample Prep Kit v2 (Illumina, Inc, California, USA) was used in the succeeding steps ...
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bioRxiv - Molecular Biology 2023Quote: ... Sequencing was performed on the Illumina HiSeq 2500 single end 100bp using the TruSeq SBS Kit HS2500 (Illumina, Inc, California, USA). Reads were aligned to the reference genome (hg38 ...
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bioRxiv - Microbiology 2023Quote: ... Sequencing was either performed using the MinION sequencer (Oxford Nanopore Technologies) or with the Nextera XT DNA Sample Preparation kit (Illumina) as described elsewhere (46 ...
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bioRxiv - Immunology 2023Quote: Sequencing was performed in a paired-end mode with S1 and S4 flow cells (2 × 150 cycles) on a NovaSeq 6000 sequencer (Illumina).
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bioRxiv - Genetics 2023Quote: ... the TruSeq DNA Methylation Kit (Illumina Inc.) was used ...
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bioRxiv - Genomics 2023Quote: The libraries were prepared using Illumina COVIDSeq Test (RUO) kit (Illumina, 20043675) as per manufacturer’s instructions at the Next Generation Genomics Facility of NCBS-TIFR ...
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bioRxiv - Genomics 2023Quote: ... custom 100 or 120 cycles single read runs were performed on HiSeq 2500 instrument (Illumina, USA) using HiSeq Rapid SBS kit v2 (50 cycle ...
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bioRxiv - Genetics 2023Quote: ... PhiX Control v3 (Illumina) was spiked into the run at a concentration of 30% to improve cluster resolution and enable troubleshooting in the event of a run failure.
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bioRxiv - Genomics 2023Quote: ... and Nextera DNA UD Indexes (Illumina 20027215). The resulting libraries were quality controlled using High Sensitivity DNA kits (Agilent 5067-4626 ...
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bioRxiv - Genetics 2023Quote: ... DNA was extracted from whole blood using MasterPure DNA Purification Kit (Biozym, Illumina Inc, USA). DNA quality and quantity estimation was done by agarose gel electrophoresis and spectrophotometry ...
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bioRxiv - Genomics 2023Quote: ... Amplification products were prepared into barcoded sequencing libraries using DNA Prep Kits (Illumina 20060059) and Nextera DNA UD Indexes (Illumina 20027215) ...
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bioRxiv - Genomics 2023Quote: ... indexed using IDT for Illumina Nextera UD indexes Sets 1–4 (384 Indexes, Cat no: 20043137, Illumina, USA) and products were amplified ...
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bioRxiv - Microbiology 2023Quote: ... The Illumina MiSeq platform (Illumina Inc., San Diego, CA, USA) was used for paired-end sequencing (2 × 300 ...
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bioRxiv - Immunology 2023Quote: ... Library preparation for Illumina sequencing was completed with NovaSeq 6000 Reagent Kits (Illumina; 20028400). cDNA was fragmented ...
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bioRxiv - Immunology 2023Quote: ... The pooled library was multiplexed sequenced (Illumina MiSeq ...
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bioRxiv - Immunology 2023Quote: ... Libraries were pooled and single end sequenced (1X75) on the Illumina NextSeq 500 using the High output V2 kit (Illumina Inc., San Diego CA).
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bioRxiv - Immunology 2023Quote: ... using Truseq stranded mRNA library construction from Illumina. Libraries were sequenced at the same platform ...
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bioRxiv - Microbiology 2023Quote: ... The raw fastq files (2 × 150 bp) generated by an Illumina® NovaSeq 6000 (Illumina®, San Diego, USA) were trimmed to remove Illumina adapter sequences using Cutadapt v1.2 ...
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bioRxiv - Biochemistry 2023Quote: ... were downloaded from Illumina iGenomes (https://support.illumina.com/sequencing/sequencing_software/igenome.html) ...
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bioRxiv - Neuroscience 2023Quote: ... DNA samples for available twin participants were genotyped using the Infinium Global Screening Array-24 v3.0 BeadChip (Illumina, California, USA). Genotyping data is expected to be available in 2023 ...
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bioRxiv - Genomics 2023Quote: ... Bisulfite converted DNA was then put through the standard Infinium HD array based methylation assay (Illumina) with Illumina Infinium HumanMethylation EPIC BeadChips ...
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bioRxiv - Genomics 2023Quote: ... The bcl files were demultiplexed using bcl2fastq v2.19.1.403 (Illumina) using default parameters ...
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bioRxiv - Bioengineering 2023Quote: ... whole-transcriptome sequencing was performed using a NovaSeq 6000 System (Illumina, Inc., San Diego, CA) at the Yale Center for Genome Analysis ...
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bioRxiv - Bioengineering 2023Quote: ... using a 150-cycle MiSeq Reagent Kit v3 (Illumina) following the manufacturer’s procedure ...
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bioRxiv - Bioengineering 2023Quote: NGS was performed on an Illumina MiSeq Next Generation Sequencer (Illumina) using a 150-cycle MiSeq Reagent Kit v3 (Illumina ...
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bioRxiv - Bioengineering 2023Quote: ... The scRNA-seq libraries were sequenced on a HiSeq 4000 System (Illumina) at the Yale Center for Genome Analysis.
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bioRxiv - Cancer Biology 2023Quote: ... DNA samples were indexed using the Nextera XT kit (Illumina). Indexed and size-selected samples were quantified using the KAPA Illumina Library Quantification kit (KAPA Biosystems ...
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bioRxiv - Cancer Biology 2023Quote: ... Sequencing was performed on a NovaSeq 6000 System S1 200 (Illumina, USA) at a sequencing depth of approximately 250 megadread pairs per sample.
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bioRxiv - Bioengineering 2023Quote: ... Libraries were pooled and paired-end sequenced at 100bp per end with an additional 10bp of index reads on a NovaSeq S4 flow cell (Illumina, Novaseq 6000).
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bioRxiv - Cancer Biology 2023Quote: ... Libraries were built using TruSeq Stranded Total RNA Library Prep (Illumina) after rRNA depletion according to the manufacturer’s protocol ...
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bioRxiv - Cancer Biology 2023Quote: ... using TruSeq ChIP Sample Preparation Kit (Illumina) or ThruPLEX® DNA-seq Kit (Rubicon Genomics ...
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bioRxiv - Cancer Biology 2023Quote: ... libraries were sequenced 2 x 150 paired end using a NovaSeq 6000 instrument (Illumina) to get 30x coverage on the genome ...
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bioRxiv - Cell Biology 2023Quote: ... The library was sequenced by Illumina NovaSeq.
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bioRxiv - Molecular Biology 2023Quote: ... We obtained a total of 952M reads with q30 of 91.32% with an SP100 cycles (Illumina, San Diego, CA, USA, 20028401) kit ...
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bioRxiv - Molecular Biology 2023Quote: ... We loaded the cancer patient samples on one lane of a NovaSeq 6000 (Illumina, San Diego, CA, USA) instrument at a concentration of 300 pM with 10% PhiX using the NovaSeq 6000 SP Reagent Kit v1.5 (100 cycles ...
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bioRxiv - Genomics 2023Quote: ... and 1.25µM indexing primers (Ad1_noMX primer and Ad2.x indexing primer 45 or IDT for Illumina dual index primers (Illumina ...
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bioRxiv - Genomics 2023Quote: ... and 1.25µM indexing primers (Ad1_noMX primer and Ad2.x indexing primer 45 or IDT for Illumina dual index primers (Illumina, Nextera DNA UD Indexes Set A Ref 20025019) ...
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bioRxiv - Neuroscience 2023Quote: ... and sequenced at 40M reads per sample (YCGA platform for library preparation with rRNA depletion, paired-end 100bp reads sequencing on Illumina Hiseq/Novaseq). Reads were aligned to GRCh38 using STAR88 and gene counts were estimated using featureCounts89 and GENCODE annotation V33 (https://www.gencodegenes.org/) ...
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bioRxiv - Evolutionary Biology 2023Quote: ... and Miseq (Illumina) for library quality ...
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bioRxiv - Cancer Biology 2023Quote: ... or the NovaSeq 6000 (Illumina) to the depth of 100,000 reads per cell ...
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bioRxiv - Developmental Biology 2023Quote: ... Libraries from amplified cDNA and gDNA were prepared following the Nextera XT (Illumina) protocol with quarter volumes ...
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bioRxiv - Developmental Biology 2023Quote: ... Illumina’s Infinium® HumanMethylation450 BeadChip (450K; Illumina, Inc., San Diego, CA, USA), covering >450,000 CpGs across 99% of RefSeq genes ...
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bioRxiv - Microbiology 2023Quote: Raw FASTQ files provided by the GTF containing all reads and corresponding tags indicating whether they were accepted or filtered out according to the CASAVA 1.82 pipeline (Illumina). Only reads tagged as accepted were kept for further analysis ...