Labshake search
Citations for Illumina :
6451 - 6500 of 10000+ citations since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Genetics 2023Quote: ... Sequencing for both input and output libraries were performed using a NextSeq Mid or High Output Kit with 150-cycles (Illumina). Additionally ...
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bioRxiv - Genetics 2023Quote: ... Sequencing was performed with a paired-end run using a NextSeq High Output Kit with 150-cycles (Illumina).
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bioRxiv - Genetics 2023Quote: ... Illumina’s gvcfgenotyper v2019.02.26 (https://github.com/Illumina/gvcfgenotyper/) was used to merge the strelka genome VCF (gVCF ...
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bioRxiv - Genetics 2023Quote: ... australis were reconstructed from Illumina paired end reads (SRA run accession number ...
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bioRxiv - Genetics 2023Quote: ... but the results were verified using the data from the parallel genome assemblies that were made from Illumina and nanopore reads as well as the transcriptome assemblies produced using Trinity.
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bioRxiv - Genetics 2023Quote: ... then prepared library using the Illumina Nextera DNA Library Preparation Kit (Illumina, Inc., San Diego, CA, USA). Samples were sequenced on a fraction of a HiSeq2000 lane to an average depth ranging from 4 to 12 ...
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bioRxiv - Genetics 2023Quote: ... the input libraries were also sequenced using a MiSeq with 300-cycles (Illumina).
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bioRxiv - Genetics 2023Quote: ... Sequencing was performed with a paired-end run using a NextSeq High Output Kit with 150-cycles (Illumina).
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bioRxiv - Genetics 2023Quote: We had the genotypes of 6958 individuals with the 50K SNPs chip (Illumina Infinium® BovineSNP50 BeadChip). Quality control was performed by removing SNPs with a call rate inferior to 99% ...
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bioRxiv - Genomics 2023Quote: The Illumina® TruSeq® Stranded mRNA Sample Preparation kit (Illumina Inc., San Diego, California, USA) was used to construct the libraries ...
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bioRxiv - Cell Biology 2023Quote: ... and a NovaSeq 6000 sequencer (Illumina). Variants were filtered at a minor allele frequency of < 0.1% or missing in gnomAD ...
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bioRxiv - Evolutionary Biology 2023Quote: ... Samples were prepared for sequencing on the Illumina HiSeq 3000 using Nextera DNA Library Prep kits (Illumina), and metagenomes (2×150 bp ...
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bioRxiv - Evolutionary Biology 2023Quote: ... The sequencing was performed using a Nextseq 500 Instrument (Illumina, USA) with a 2×150 bp paired-end protocol at the Plateforme de Microbiologie Mutualisée (P2M ...
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bioRxiv - Evolutionary Biology 2023Quote: ... Ribo-Zero Plus library preparation and next-generation sequencing (Illumina NovaSeq S4) were performed at AGRF ...
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bioRxiv - Evolutionary Biology 2023Quote: ... Tisiphia’ genomes (including the Illumina assembly from the first step) to identify sequences belonging to this strain of ‘Ca ...
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bioRxiv - Genetics 2023Quote: ... and 4 μl of bisulfite-converted DNA was measured on the Illumina HumanMethylation450 array using the manufacturer’s protocol (Illumina, San Diego, CA, USA). Preprocessing and normalization of the data were done using DNAmArray workflow previously developed by our group (https://molepi.github.io/DNAmArray_workflow/) ...
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bioRxiv - Genetics 2023Quote: ... 500ng of total RNA with RIN values of 6.5-10 underwent polyA selection and TruSeq library preparation according to instructions provided by Illumina (TruSeq Stranded mRNA LT Kit ...
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bioRxiv - Evolutionary Biology 2023Quote: ... pooled and sequenced on a NovaSeq 6000 sequencer (Illumina, San Diego ...
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bioRxiv - Evolutionary Biology 2023Quote: ... Sequencing was performed using a NextSeq500 sequencer (Illumina). Mutations and their frequency were called using breseq (Deatherage and Barrick ...
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bioRxiv - Evolutionary Biology 2023Quote: ... Sequencing on a MiSeq sequencer (Illumina, San Diego ...
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bioRxiv - Evolutionary Biology 2023Quote: ... Illumina Nextera kit (Illumina, San Diego, CA) was used for library preparation and the samples were sequenced with NextSeq 550 platform ...
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bioRxiv - Evolutionary Biology 2023Quote: ... Libraries were prepared according to the manufacturer’s instructions using the TruSeq Stranded mRNA Prep Kit (Illumina #20020594). The resulting libraries were quantified using a Bioanalyzer (Agilent Technologies ...
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bioRxiv - Evolutionary Biology 2023Quote: ... Amplicons of the V3-V4 hypervariable region (341f/806r) were sequenced using the Illumina MiSeq platform (Illumina, USA) with 2x 300-bp paired-end read settings at the IKMB ...
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bioRxiv - Evolutionary Biology 2023Quote: ... after which a custom second-strand synthesis buffer (Illumina), dNTPs ...
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bioRxiv - Genetics 2023Quote: ... using the HiSeq 3000/4000 SBS Kit or NovaSeq 6000 S1 Reagent Kit (100 Cycles) (Illumina).
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bioRxiv - Genetics 2023Quote: ... The transposition reaction containing TDE1 Tagment DNA Enzyme (Illumina; 20034198) was incubated at 37°C for 30 minutes ...
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bioRxiv - Genetics 2023Quote: ... using the HiSeq 3000/4000 SBS Kit or NovaSeq 6000 SP or S2 Reagent Kit (100 Cycles) (Illumina).
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bioRxiv - Developmental Biology 2023Quote: The bcl files were converted to fastq using bcl2fastq (Illumina) and quality controlled using FastQC65 and demultiplexed using Pheniqs66 ...
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bioRxiv - Genetics 2023Quote: ... followed by the Nextera XT DNA sample preparation Kit (Illumina) and sequenced using the Illumina Hiseq 4000 technology (1x50 bases) ...
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bioRxiv - Genomics 2023Quote: ... we estimate the posterior probability palt that the barcode deviates from the standard list due to sequencing error using the quality scores for the putatively errant base provided by Illumina or Element palt = falt10-q/10 where q is the quality score ...
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bioRxiv - Genomics 2023Quote: ... WES with at least 97% coverage at 20x was performed using the Illumina NovaSeq6000 System (Illumina, San Diego, CA, USA). Library preparation was performed using the Illumina Exome Panel (Illumina ...
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bioRxiv - Genomics 2023Quote: ... and scATAC-seq libraries were sequenced on Illumina NextSeq instruments using NextSeq High Output Kit (Illumina #20024907) with 64 cycles for read 1 ...
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bioRxiv - Genomics 2023Quote: Variants called from Illumina along with pedigree information (trios ...
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bioRxiv - Genomics 2023Quote: ... coverage and eight additional female genomes (4 Asian and 4 African) at ~30× (1 lane of Illumina Hiseq X Ten) coverage using 10x Linked-Reads at HudsonAlpha Institute of Biotechnology ...
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bioRxiv - Genomics 2023Quote: ... Tissue-specific libraries were sequenced PE150 on two lanes of NovaSeq 6000 (Illumina) (table S1) ...
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bioRxiv - Genomics 2023Quote: ... Library preparation was performed using the Illumina Exome Panel (Illumina) according to the manufacturer’s protocol ...
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bioRxiv - Genomics 2023Quote: We sequenced one elephant reference genome (Em538) to ~60× (2 lanes of Illumina Hiseq X Ten) coverage and eight additional female genomes (4 Asian and 4 African ...
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bioRxiv - Genomics 2023Quote: ... and paired-end sequencing was done with a HiSeq 2500 instrument (Illumina).
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bioRxiv - Genomics 2023Quote: ... a library with an average insert size ∼150 bp was constructed and sequenced using the Illumina NovaSeq 6000 (Illumina, San Diego, CA, USA) platform ...
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bioRxiv - Genomics 2023Quote: We used the tool hap.py (https://github.com/Illumina/hap.py) which we downloaded as a Docker image (jmcdani20/hap.py:v0.3.12 ...
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bioRxiv - Genomics 2023Quote: ... Libraries for sequencing were prepared according to the manufacturer’s instructions with TruSeq Stranded Total RNA Library Prep Kit with Ribo-Zero Gold (Illumina, RS-122-2301) and paired-end sequencing was done with a HiSeq 2500 instrument (Illumina).
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bioRxiv - Genomics 2023Quote: ... Libraries for next-generation sequencing were prepared and sequenced with a HiSeq 2500 or 3000 instrument (Illumina). Quality filtering and alignment of the raw reads was done using Trimmomatic23 (version 0.36 ...
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bioRxiv - Genomics 2023Quote: ... for each sample using Illumina protocol25 and the PE150bp strategy were used to sequence the 16S Metagenomic Sequencing Library following protocol (Part # 15044223 Rev. B) of MiSeq 2500 platform (Illumina). The amplified 16S gene by PCR was resolved in a 1.5% agarose gel.
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bioRxiv - Evolutionary Biology 2023Quote: ... 28 and 91-base reads on a NextSeq 2000 sequencer (Illumina). The Cas9-edited Molecular Recorder barcodes were PCR amplified from single-cell cDNA libraries as previously described [Chan et al. ...
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bioRxiv - Developmental Biology 2023Quote: ... Primers were designed based upon sequences obtained from the sequenced transcriptome (Illumina) of D ...
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bioRxiv - Developmental Biology 2023Quote: ... Set A (Illumina #RS-122-2301) according to manufacturer’s recommendation ...
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bioRxiv - Developmental Biology 2023Quote: ... poly-A selection and RNA-sequencing library preparation was done using non strand massively-parallel cDNA sequencing (mRNA-Seq) protocol from Illumina, the TruSeq RNA Library Preparation Kit v2 ...
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bioRxiv - Developmental Biology 2023Quote: ... Libraries were sequenced by Illumina Nova-seq 6000 platform with pair-end reads of 150 bp.
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bioRxiv - Developmental Biology 2023Quote: ... RNA-seq libraries were sequenced by Illumina NovaSeq 6000 platform with pair-end reads of 150 bp ...
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bioRxiv - Developmental Biology 2023Quote: ... The amplified fragmented cDNAs of 300 bp in size were sequenced in single-end mode using the NextSeq500 (Illumina) with a read length of 101 bp ...