Labshake search
Citations for Illumina :
4751 - 4800 of 5691 citations for TD 5108 CAS 866933 46 2 99% since 2020
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Microbiology 2023Quote: ... a targeted bait-enrichment approach was used to enrich RNA-seq libraries for sequencing on the MiSeq platform (Illumina, San Diego, CA, USA). Hantavirus sequences from each genomic segment (S ...
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bioRxiv - Microbiology 2023Quote: The sequencing library was prepared using the TruSeq Stranded mRNA Sample Prep Kit and sequenced on NovaSeq 6000 (Illumina, San Diego, CA, USA), yielding more than 6G bases of sequence for each sample ...
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bioRxiv - Pharmacology and Toxicology 2023Quote: Then libraries with different indices were multiplexed and loaded on an Illumina HiSeq instrument according to the manufacturer’s instructions (Illumina, San Diego, CA, USA). Sequencing was carried out using a 2×150bp paired-end (PE ...
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bioRxiv - Systems Biology 2022Quote: ... All DNA samples were adjusted to the same volume and concentration for sodium bisulfite conversion followed by DNAm analysis on the Illumina Infinium MethylationEPIC Beadchip (Illumina, San Diego, CA) at the University of Southern California Epigenome Center Core Facilities ...
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bioRxiv - Neuroscience 2023Quote: ... The pool was sequenced at the MGH Next-Generation Sequencing Core using an Illumina MiSeq Instrument that performed 20,000 paired-end 250bp reads per sample (Illumina, San Diego, CA, USA).
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bioRxiv - Molecular Biology 2023Quote: ... and the pooled library (from 27 RNA samples) was loaded to an SP flow cell and sequenced on the NovaSeq 6000 platform (Illumina; San Diego, CA) with 2 x 150 bp paired-end sequencing ...
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bioRxiv - Bioengineering 2023Quote: ... Coates Genomics Sequencing Laboratory at UC Berkeley using the 300 PE MiSeq platform and TruSeq SBS Kit v3-HS (Illumina, San Diego, CA). Illumina FASTQ files were demultiplexed ...
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bioRxiv - Genomics 2023Quote: ... using custom probes designed for targeted exome capture (TEC) and sequenced on paired-end mode (150 bp) on an Illumina NovaSeq 6000 platform (Illumina, San Diego, CA). Target resequencing was based on a custom probe design covering 1,609 nuclear genes with a 3.2M bp cumulative target size and reduced sequence redundancy (Milesi et al ...
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bioRxiv - Genomics 2023Quote: ... All samples were sequenced in the MSU RTSF Genomics core with paired-end 150 bp reads on an HiSeq 6000 system (Illumina, San Diego, CA). Reads were quality and adapter trimmed using trimmomatic version 0.38 62 ...
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bioRxiv - Cell Biology 2023Quote: ... and then subjected to the transcriptomic sequencing by Beijing Genomics Institute (BGI, Shenzhen, China) on an Illumina HiSeq 2000 sequencing system (Illumina, San Diego, CA). All the detected mRNAs were fragmented into short fragments of approximately 200 bp ...
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bioRxiv - Genomics 2023Quote: ... The RNA library was prepared using TruSeq Stranded Total RNA Library Preparation kit with the Ribo-Zero Plant workflow (Illumina Inc., CA, USA). The transcriptome library was sequenced on Illumina NovaSeq 6000 instrument to generate 150 bp paired-end reads.
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bioRxiv - Genomics 2023Quote: ... sitchensis from a previous genotyping study using P. glauca Infinium genotyping arrays (Pavy et al. 2013) to develop a new Infinium iSelect array (Illumina, San Diego, CA) for genomic analyses ...
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bioRxiv - Developmental Biology 2023Quote: ... Sequencing libraries were prepared at the Genomics Technology Core at the University of Missouri using the TruSeq Stranded mRNA kit (Illumina, San Diego, CA). Approximately 35 million pair-end sequences of 100 nucleotides long were produced per sample in a NovaSeq6000 instrument (Illumina ...
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bioRxiv - Cell Biology 2023Quote: ... Samples with an RNA integrity number of > 9 were used for construction of a complementary DNA library by an Illumina TruSeq kit (Illumina, San Diego, CA). The sequencing strategy was 100 bp paired-end by an Illumina HiSeq 4000 ...
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bioRxiv - Genomics 2023Quote: ... RNA sequencing was performed at the Estonian Genome Centre Core Facility using paired-end 50-bp sequencing technology (Illumina, San Diego, CA, USA), according to the manufacturer’s specifications.
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bioRxiv - Zoology 2023Quote: Each total genomic eDNA sample was used to library prep for high-throughput sequencing using a MiSeq platform (Illumina, San Diego, CA, USA). The primers set ...
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bioRxiv - Developmental Biology 2023Quote: ... libraries were prepared using the Illumina stranded mRNA Kit and 100bp paired-ends reads were sequenced to an average depth pf 40 million reads/replicate on the NovaSeq 6000 (Illumina, San Diego, CA).
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bioRxiv - Cell Biology 2023Quote: ... Six hundred pg of pre-amplified cDNAs were then used as input for Tn5 transposon tagmentation by the Nextera XT DNA Library Preparation Kit (96 samples) (Illumina, San Diego, CA) followed by 12 cycles of library amplification ...
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bioRxiv - Genetics 2023Quote: ... Each pool was sequenced using standard paired-end (100bp) rapid run chemistry in a single lane on a HiSeq 2500 (Illumina, San Diego, CA). The final batch contained repeats from previous batches ...
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bioRxiv - Developmental Biology 2023Quote: ... We amplified cDNA using a modified mcSCRB-seq protocol and produced libraries using the Illumina DNA Prep kit (Illumina, Inc, San Diego, CA) (112 ...
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bioRxiv - Microbiology 2023Quote: ... The diluted library was combined with the subsequent PhiX control v3 (20%, v/v) and loaded onto a MiSeq v2 (500 cycles) reagent cartridge (Illumina, Carlsbad, CA, USA). The resulting sequences were uploaded to BaseSpace (Illumina ...
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bioRxiv - Plant Biology 2023Quote: ... A paired-end genomic libraries with an insert size of 470 bp was prepared using the Genomic DNA Sample Prep kit (Illumina, San Diego, CA) and sequenced on an Illumina NextSeq 1000 platform ...
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bioRxiv - Molecular Biology 2023Quote: Multiplex sequencing libraries were generated from 500 ng of total RNA (per library) using Illumina’s TruSeq sample prep kit and multiplexing sample preparation oligonucleotide kit (Illumina Inc., San Diego, CA) following the manufacturer’s instructions ...
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bioRxiv - Genomics 2023Quote: ... The resulting sequencing libraries were sequenced by the Institute for Integrative Genome Biology Core facility at the University of California at Riverside using the MiSeq instrument with 100 bp paired-end reads (Illumina, San Diego, CA).
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bioRxiv - Neuroscience 2022Quote: ... Libraries were sequenced at Canada’s Michael Smith Genome Sciences Centre (BC Cancer Research, Vancouver, BC, Canada) using the Illumina HiseqX (Illumina Inc., San Diego, CA). On average ...
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bioRxiv - Neuroscience 2022Quote: ... The input sample and enriched DNA samples obtained from the ChIP assays were used for library construction using the TruSeq ChIP Sample Prep Kit (Illumina; San Diego, CA) according to manufacturer’s instructions ...
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bioRxiv - Molecular Biology 2022Quote: ... RNA-Seq libraries were generated from 100 to 300 ng of RNA using TruSeq Stranded Total RNA Library Prep Gold kit and TruSeq RNA Single Indexes kits A and B (Illumina, San Diego, CA), according to manufacturer’s instructions ...
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bioRxiv - Molecular Biology 2022Quote: Amplified cDNA (0.25 ng) was used for preparing the sequencing library with the Nextera XT DNA Library Prep Kit (Illumina, San Francisco, CA, USA). Paired-end sequencing was performed on the MiSeq platform ...
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bioRxiv - Microbiology 2022Quote: ... greater than 8.0 were used to generate RNA sequencing libraries using the TruSeq Stranded mRNA Sample Prep Kit with TruSeq Unique Dual Indexes (Illumina, San Diego, CA). Samples were processed following manufacturer’s instructions ...
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bioRxiv - Microbiology 2022Quote: Purified ribodepleted RNA underwent library preparation using the Illumina TruSeq Stranded mRNA Sample Preparation kit following the manufacturer’s protocol modification for purified mRNA as input (Illumina, San Diego, CA, USA). Libraries were validated for length and adapter dimer removal using the Agilent TapeStation 4200 D1000 High Sensitivity assay (Agilent Technologies ...
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bioRxiv - Genomics 2022Quote: Illumina RNAseq libraries were prepared for both Porites lobata and Pocillopora meandrina using the TruSeq Stranded mRNA kit (Illumina, San Diego, CA, USA), according to the manufacturer’s protocol starting with 500 ng total RNA ...
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bioRxiv - Plant Biology 2022Quote: ... Hi-C libraries were sequenced on a S4 flowcell in paired end mode generating 151 nt reads on an Illumina NovaSeq 6000 (Illumina, San Diego, CA). Contigs less than 10 kb were removed from the assembly using seqtk (v1.3;https://github.com/lh3/seqtk) ...
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bioRxiv - Plant Biology 2022Quote: ... 100 ng of this genomic DNA was subsequently used to prepare Bisulfite libraries with the TruSeq Nano kit (Illumina, San Diego, CA, USA) according to the manufacturer’s instructions ...
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bioRxiv - Neuroscience 2022Quote: ... after which the pooled library was sequenced on a MiSeq system using a 600-cycle MiSeq Reagent Kit v3 as per manufacturer’s instructions (Illumina, San Diego, CA, USA). Post-processing of the data resulting from the MiSeq sequencing was conducted using QIIME 2 (Bolyen et al. ...
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bioRxiv - Evolutionary Biology 2024Quote: The transcriptome was sequenced using Illumina HiSeq 2000 2x150bp platform from cDNA libraries prepared using TruSeq RNA sample prep kit v2 (Illumina, San Diego, CA) at Macrogen Inc ...
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bioRxiv - Bioengineering 2024Quote: ... then the target exon was extracted with B2M exon primers with attached Nextera XT DNA Library Preparation Kit (Illumina, San Diego, Ca, USA) index adapter sequences ...
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bioRxiv - Microbiology 2024Quote: ... The V4 – V5 region of the 16S rRNA gene was amplified with the 515F/926R primer pair (45,46) and sequenced on the MiSeq platform (Illumina, Inc., San Diego, CA).
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bioRxiv - Neuroscience 2024Quote: ... RNA-Seq libraries were generated from 200 ng of total RNA using TruSeq Stranded mRNA Library Prep Kit and TruSeq RNA Single Indexes kits A and B (Illumina, San Diego, CA), according to the manufacturer’s instructions ...
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bioRxiv - Microbiology 2024Quote: ... regions ITS1-ITS2 were constructed using a dual-indexing method and sequenced on a MiSeq platform with a 2x300 bp run format (Illumina, San Diego, CA) at the University of Wisconsin – Madison Biotechnology Center ...
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bioRxiv - Pharmacology and Toxicology 2024Quote: ... we used the standard Illumina TruSeq protocol (TruSeq Stranded mRNA LP, Cat # 20020594 and TruSeq RNA Sg Idx SetB, Cat # 20020493, Illumina, San Diego, CA)) following the manufacturers recommendations and as was done previously 31 ...
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bioRxiv - Pathology 2024Quote: ... Library preparation and sequencing was performed by the Genomics and Computational Biology Core (NIDCR, NIH) using an Illumina HiSeq 2500 (Illumina, San Diego, CA) configured for 37 paired-end reads (human ...
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bioRxiv - Neuroscience 2024Quote: Approximately 500 ng of total RNA was used for cDNA library preparation with oligo-dT primers following the Illumina TruSeq preparation guide (Illumina, San Diego, CA) (Mecklenburg et al. ...
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bioRxiv - Immunology 2024Quote: ... Texas A&M Institute for Genome Sciences and Society (College Station, TX, USA) constructed sequencing libraries for each sample using a standard protocol (Illumina, San Diego, CA). RNA-Seq library quality was assessed with the Cutadapt package and mapped to the equine genome using the HISTAT2 package ...
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bioRxiv - Microbiology 2024Quote: ... Sequencing libraries were prepared as described by the Earth Microbiome Project [53] and sequenced on an Illumina MiSeq Sequencer (Illumina, San Diego, CA).
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bioRxiv - Immunology 2024Quote: ... TRB sequencing was performed on pools of libraries from 11 - 15 tumor or skin samples on the Illumina MiSeq platform using a v3 150-cycle kit (Illumina, San Diego, CA) in the FHCC Genomics Core Facility (Seattle ...
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bioRxiv - Immunology 2024Quote: ... Sequencing of the PCR amplicons spanning the MHC loci was performed on the Illumina MiSeq platform using a v2 500-cycle kit (Illumina, San Diego, CA) in the FHCC Genomics Core Facility or the UCI-Fred Hutch Cancer Centre Laboratory.
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bioRxiv - Microbiology 2024Quote: Total RNA of 5 μg was used to construct strand-specific RNA-sequencing libraries using the TruSeq RNA sample preparation Kit from Illumina (San Diego, CA). Briefly ...
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bioRxiv - Genomics 2024Quote: Methylation analysis was conducted using the Illumina Infinium chemistry.43 DNAm levels across ∼850,000 CpG sites were measured using the Infinium Methylation EPIC BeadChip (Illumina, Inc.; San Diego, CA). Beta values for CpG sites across the genome were measured according to kit protocols and filtered to remove polymorphic positions ...
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bioRxiv - Developmental Biology 2024Quote: ... >7 passed quality control and were used for library preparation with the Illumina Stranded mRNA Library Prep Kit according to manufacturer’s instructions (Cat #20040532, Illumina Inc., San Diego, CA). This procedure includes mRNA purification and fragmentation ...
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bioRxiv - Microbiology 2024Quote: DNA samples were sequenced at the Center for Quantitative Life Sciences at Oregon State University (Corvallis, OR) on an Illumina HiSeq platform using a Nextera XT library preparation kit (Illumina, San Diego, CA). Primer and adaptor removal and read-trimming were performed with fastP using default settings for Nextera adapters (35) ...