Labshake search
Citations for Illumina :
4801 - 4850 of 5691 citations for TD 5108 CAS 866933 46 2 99% since 2020
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Microbiology 2024Quote: We whole-genome sequenced each sample with Illumina technology (MiSeq and HiSeq 2500) using Nextera XT library preparation kits as instructed by the manufacturer (Illumina, San Diego, CA). Fastq files (raw sequencing data ...
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bioRxiv - Molecular Biology 2024Quote: ... Paired-end sequencing was carried out on an Illumina MiniSeq system according to the manufacturer’s instructions using a 300-cycle Mid or 300-cycle High kit (Illumina, San Diego, CA, USA), depending on the number of samples in each pool ...
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bioRxiv - Microbiology 2023Quote: ... We prepared DNA libraries employing the Nextera XT library preparation kit and the Nextera XT v2 index kit (Illumina, San Diego, CA, USA). The library was sequenced on a HiSeq4000 (Illumina ...
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bioRxiv - Synthetic Biology 2023Quote: ... Sequencing was performed on an Illumina MiSeq instrument using the 300-cycle MiSeq Reagent Kit v2 (Illumina, San Diego, CA, USA, MS102-2002).
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bioRxiv - Developmental Biology 2023Quote: ... Total RNA-Seq libraries were generated from 150-300 ng of total RNA using TruSeq Stranded Total RNA LT Sample Prep Kit with Ribo-Zero Gold (Illumina, San Diego, CA), according to manufacturer’s instructions ...
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bioRxiv - Developmental Biology 2023Quote: ... All the libraries were sequenced in a PE150 mode (Pair-End for 150bp read) in the X Ten instrument (Illumina, San Diego, CA).
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bioRxiv - Evolutionary Biology 2023Quote: ... and were then sent to the Swedish National Genomics Infrastructure’s SNP & SEQ platform in Uppsala for Illumina HiSeq 2500 sequencing (8 lanes; 126 bp Paired-End sequencing; Illumina, San Diego, CA, USA).
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bioRxiv - Microbiology 2023Quote: ... The pooled library (600 μL at 20 picomolar) was denatured and sequenced on an Illumina MiSeq sequencer (Illumina Inc., San Diego, CA, US).
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bioRxiv - Genomics 2023Quote: ... The libraries were sequenced at a target depth of 20,000 paired-end 150 bp reads per sample using a MiSeq machine (Illumina, San Diego, CA, USA). Reads were filtered by length <150 bp and using a maximum expected error threshold of 1.0 ...
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bioRxiv - Evolutionary Biology 2023Quote: We sequenced the targeted Y-chromosome regions in 5,020 samples using the YHseqY3000 panel on the Illumina platform (Illumina, San Diego, CA, USA) and used the BWA v.0.7.13 (Li and Durbin 2009 ...
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bioRxiv - Cell Biology 2023Quote: ... The library was prepared with PCR products pooled in equimolar amounts following the manufacture’s protocol and loaded in a Micro MiSeq Reagent Kit v2 (500-cycles) (Illumina, San Diego, CA, USA) on a MiSeq platform (Illumina) ...
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bioRxiv - Systems Biology 2023Quote: ... The final library was submitted for sequencing on an Illumina sequencer (different sequencers were used, namely NovaSeq, HiSeq, NextSet, and MiSeq; all from Illumina, San Diego, CA). 50 bp single-end sequencing was performed in all cases to cover the barcode region ...
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bioRxiv - Cell Biology 2023Quote: ... were used instead of the primers that came with the SMARTer Stranded Total RNA HI Mammalian kit to allow for sequencing on the NovaSeq (Illumina, San Diego, CA) by the Biopolymers Facility at Harvard Medical School.
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bioRxiv - Genomics 2023Quote: ... and it was subsequently sequenced using an Illumina Genome Analyzer IIx with the TruSeq SBS 36-Cycle Kit (Illumina, San Diego, CA, USA) for 72 bp PE reads ...
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bioRxiv - Microbiology 2023Quote: ... Separate libraries for the two experimental conditions belonging to three independent experiments were prepared with the TruSeq RNA Sample Prep kit (Illumina, San Diego, CA) according to the manufacturer’s protocol ...
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bioRxiv - Microbiology 2023Quote: ... Prepared libraries were sequenced to an expected sequencing depth of 100,000 paired-end reads per sample on an Illumina MiSeq instrument (Illumina Inc, San Diego, CA) using a 600 (2×300 base pair ...
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bioRxiv - Genomics 2023Quote: ... we normalize all libraries to 10mM and pool all for sequencing using paired-end 2x150 bp reads over one lane of an S4 flowcell on an Illumina NovaSeq 6000 DNA sequencer (Illumina, San Diego, CA) run at the UCSD Institute for Genomic Medicine Genomics Center ...
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bioRxiv - Genomics 2023Quote: ... paired-end libraries were prepared from total RNA by ribosomal depletion using the Ribo-Zero Gold plant rRNA removal kit (Illumina, San Diego, CA). Samples were processed following the manufacturer’s instructions.
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bioRxiv - Genomics 2023Quote: ... Libraries were pooled in groups of twelve and sequenced (twelve samples per lane) on an Illumina HiSeq 2500 ultra high-throughput DNA sequencing platform (Illumina, San Diego, CA) at the DNA Core facility at the University of Missouri ...
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bioRxiv - Cancer Biology 2023Quote: ... and the RNA-seq analysis was performed using Illumina HiSeq2500 system using paired-end sequencing chemistry with 100bp read length (Illumina, San Diego, CA) at the Finnish Functional Genomics Centre ...
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bioRxiv - Microbiology 2023Quote: ... DNA extracts were used for metagenomic library preparation as described previously (32) using Illumina Nextera DNA Library Preparation Kit (Illumina, San Diego, CA) and sequenced with 2×150 bp paired-end reads on a NovaSeq platform (Illumina).
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bioRxiv - Microbiology 2023Quote: ... Rapid DNA extraction from microbial isolates was adapted from Köser et al.63 and sequenced as previously described28 on the NovaSeq 6000 Sequencing System (Illumina, San Diego, CA, USA), 2×150bp paired end to approximately 100X coverage per genome ...
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bioRxiv - Evolutionary Biology 2023Quote: ... multiplexed and sequenced as 150 bp paired-end reads using two lanes on an Illumina Hi-Seq 2000 (Illumina, San Diego, CA, USA) through Novogene (Beijing ...
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bioRxiv - Neuroscience 2023Quote: ... We produced libraries for 31-mRNA sequencing using 200 ng of purified RNA per sample processed with a TruSeq Stranded RNA Kit (Illumina, San Diego, CA) according to the manufacturer’s protocol ...
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bioRxiv - Microbiology 2023Quote: ... cDNA libraries were prepared using Illumina TruSeq Stranded Total RNA with the Ribo-Zero Library Prep Kit (Illumina Inc., San Diego, CA USA) and RNA sequencing was performed by Psomagen (Psomagen Inc. ...
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bioRxiv - Genomics 2023Quote: ... was used to demultiplex reads with options --use-bases-mask Y*,I8Y*,I*,Y* --mask-short-adapter-reads 0 --minimum-trimmed-read-length 0 (Illumina, San Diego, CA). FastQC (v0.11.8 ...
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bioRxiv - Cancer Biology 2023Quote: ... After purification from dimers by size selection in the agarose gel the libraries were sequenced on a NovaSeq 6000 (Illumina, San Diego, CA).
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bioRxiv - Microbiology 2023Quote: ... Short-read genome sequencing was provided by MicrobesNG (microbesng.com) where DNA was prepared using the Nextera XT kit (Illumina, San Diego, CA, USA) and sequenced on the Illumina HiSeq platform (Illumina) ...
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bioRxiv - Cell Biology 2023Quote: ... Editing frequencies in samples collected following transplantation were assessed via deep sequencing of PCR amplified libraries of the CD33 gRNA target region (Table S1) on an Illumina Miseq (Illumina, San Diego, CA) via 300bp paired end reads and a median sequencing depth of 100,000 reads/gRNA target site ...
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bioRxiv - Neuroscience 2023Quote: ... RNA samples with RQNs ranging from 8 to 10 were used for RNA library preparation with the TruSeq Stranded mRNA Library Prep Kit (Illumina, San Diego, CA). Briefly ...
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bioRxiv - Microbiology 2023Quote: The V1 and V2 regions of the 16S rRNA gene were amplified using universal bacterial primers 27F and 355R74 with CS1 and CS2 adapters (Illumina, San Diego, CA). PCR was conducted with the following reaction composition ...
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bioRxiv - Immunology 2024Quote: ... The libraries were diluted to 2nM and pooled for paired-end sequencing (Read1: 51bp, Read2: 71bp + i7 Indexes: 8bp) on a NovaSeq 6000 S Prime sequencer (Illumina, San Diego, CA) at the SNP&SEQ Technology Platform (Uppsala ...
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bioRxiv - Microbiology 2024Quote: ... Final purified products were quantified and pooled at equimolar concentrations for high-throughput sequencing on the Illumina MiSeq platform (Illumina, San Diego, CA) at the University of North Carolina at Chapel Hill high-throughput sequencing facility.
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bioRxiv - Immunology 2023Quote: ... Samples were randomly grouped and run with two libraries per sequencing run on three NextSeq High Output 150 cycle reagent kits (Illumina, San Diego, CA), with 1% PhiX ...
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bioRxiv - Immunology 2022Quote: ... at endpoints A and B (total 18 samples) was used to construct cDNA libraries with the TruSeq Stranded mRNA kit (Illumina, San Diego, CA) and the indexed fragments were sequenced on the NGS NextSeq 500 (Illumina ...
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bioRxiv - Cancer Biology 2022Quote: ... Paired-end DNA sequencing with 150bp read length was performed at the SNP&SEQ Technology Platform in Uppsala (Uppsala University, Uppsala, Sweden) using an Illumina HiSeqX sequencer (Illumina, San Diego, CA) with v2.5 sequencing chemistry.
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bioRxiv - Microbiology 2022Quote: The gut mycobiome composition was determined using Illumina MiSeq amplicon-based sequencing of ITS2 gene regions with adapters compatible for the Nextera Index Kit® (Illumina, CA, USA). For the library preparation ...
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bioRxiv - Biochemistry 2022Quote: ... SITE-Seq assay library preparation and sequencing was performed as described previously and the final library was loaded onto the Illumina NextSeq platform (Illumina, San Diego, CA), and ~1-3 M reads were obtained for each sample.
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bioRxiv - Cell Biology 2022Quote: ... Libraries were sequenced on an Illumina NextSeq 500/550 system using NextSeq 500/550 High Output Kit v2.5 (75-cycles, Illumina, San Diego, CA, USA).
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bioRxiv - Molecular Biology 2022Quote: Small RNA-Seq libraries were generated from 1000 ng of total RNA using TruSeq Small RNA Library Prep Kit (Illumina, San Diego, CA), according to manufacturer’s instructions ...
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bioRxiv - Neuroscience 2022Quote: ... at the HIHG or The American Genome Center at Uniformed Services University of the Health Sciences (USUHS) using the TruSeq DNA PCR-Free library preparation kit and sequencing on the Novaseq 6000 (Illumina, San Diego, CA). WGS was analyzed through a bioinformatics pipeline including alignment to the GRCh38 genome build with BWA mem ...
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bioRxiv - Cancer Biology 2022Quote: ... The targeted amplicon libraries were spiked into the remainder of the gene expression and immunophenotyping libraries to be sequenced together on a NovaSeq (Illumina, San Diego, CA). The cycle settings were as follows ...
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bioRxiv - Cancer Biology 2022Quote: Total RNA isolated from BM was processed using the TruSeq RNA Sample Preparation v2 kit (low-throughput protocol; Illumina, San Diego, CA, USA) to prepare the barcoded libraries ...
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bioRxiv - Cancer Biology 2022Quote: ... and high-throughput sequencing was performed at Shanghai Jiao Tong University School of Medicine (Shanghai, China) using the HiSeq 4000 (Illumina, San Diego, CA).
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bioRxiv - Cancer Biology 2022Quote: ... RNA-seq libraries were generated from 500 ng of total RNA using the TruSeq Stranded mRNA Library Prep Kit and TruSeq RNA Single Indexes kits A and B (Illumina, San Diego, CA), according to the manufacturer’s instructions ...
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bioRxiv - Genomics 2022Quote: ... 3 μg of total RNA from each sample was converted into cDNA using the TruSeq Stranded mRNA LT Sample Prep Kit (Catalog No. RS-122-2101, Illumina, San Diego, CA) to construct cDNA libraries ...
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bioRxiv - Genomics 2022Quote: ... according to the manufacturer’s protocol and sequenced using 50bp paired end sequencing mode on Illumina Novaseq 6000 platform (Illumina, San Diego, CA, USA). To perform counts of transcripts from paired-end reads we used Salmon (62 ...
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bioRxiv - Genetics 2022Quote: ... Single-end 150-bp sequencing to a depth of 2.5 million reads per sample was performed on an Illumina NovaSeq machine (Illumina, San Diego, CA, USA). Raw data were deposited in the National Center for Biotechnology Information Short Read Archive (NCBI SRA ...
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bioRxiv - Genomics 2022Quote: ... WG and Small RNA libraries were prepared using the Nextera DNA Library Preparation Kit for paired end reads (Illumina, San Diego CA, USA) and the NEBNext Small RNA Library Prep Set (New England Biolabs ...
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bioRxiv - Genetics 2022Quote: ... Total RNA-Seq libraries were generated from a minimum of 150-300 ng of total RNA using TruSeq Stranded Total RNA LT Sample Prep Kit with Ribo-Zero Gold (Illumina, San Diego, CA), according to the manufacturer’s instructions ...