Labshake search
Citations for Illumina :
4851 - 4900 of 5691 citations for TD 5108 CAS 866933 46 2 99% since 2020
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Genomics 2023Quote: Poly-A selected stranded mRNA libraries were constructed from 1 μg total RNA using the Illumina TruSeq Stranded mRNA Sample Prep Kits (Illumina, San Diego, CA) according to manufacturer’s instructions with the following exception ...
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bioRxiv - Physiology 2023Quote: ... RNA samples with RQNs ranging from 8 to 10 were used for RNA library preparation with the TruSeq Stranded mRNA Library Prep Kit (Illumina, San Diego, CA). Briefly ...
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bioRxiv - Evolutionary Biology 2023Quote: ... The presence of a ∼275 bp peak indicated successful amplification and these libraries were then sequenced using a MiSeq instrument (Illumina, San Diego, CA). Raw fastq reads was extracted by Illumina bcl2fastq (v2.20.0 ...
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bioRxiv - Microbiology 2023Quote: ... Resulting libraries were sequenced as 28/10/10/50 base reads on the NovaSeq instrument using the S2 Reagent kit in paired-end mode (Illumina, San Diego, CA). Fastq files were processed with Spaceranger-1.4.2 pipeline ...
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Differences in gut metagenomes between dairy workers and community controls: a cross-sectional studybioRxiv - Genomics 2023Quote: Sequencing libraries were prepared from 250pg gDNA with a quarter reaction workflow using the Nextera XT Library Prep Kit (Illumina, San Diego, CA) and 12 cycles of indexing PCR ...
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bioRxiv - Systems Biology 2023Quote: ... greater than 8.0 were used to generate RNA sequencing libraries using the TruSeq Stranded mRNA Sample Prep Kit with TruSeq Unique Dual Indexes (Illumina, San Diego, CA). Samples were processed following manufacturer’s instructions ...
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bioRxiv - Systems Biology 2023Quote: ... region were PCR amplified as previous described [35] and the resulting amplicons were quantified and sequenced on the Illumina Miseq PE300 sequencing platform (Illumina, San Diego, CA).
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bioRxiv - Plant Biology 2023Quote: ... RNA-seq library was constructed from the total extracted RNA using the Illumina TruSeq RNA Library Prep Kit (Illumina, San Diego, CA, USA) according to the manufacturer’s protocol ...
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bioRxiv - Microbiology 2023Quote: ... Poly(A)-enriched mRNA sequencing libraries were prepared using an Illumina TruSeq® stranded mRNA Library Prep Kit (Illumina, San Diego, CA, USA) according to the manufacturer’s instructions ...
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bioRxiv - Developmental Biology 2023Quote: RNA sequencing was performed in Georgia Genomics and Bioinformatics Core Facility at the University of Georgia using the NextSeq 500 system (Illumina, San Diego, CA) following the procedures as described previously (Ishan et al. ...
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bioRxiv - Cell Biology 2023Quote: ... and sequencing reagents were used throughout the process using NEBNext Ultra DNA Library Prep kit following the manufacturer’s recommendations (Illumina, San Diego, CA, USA). End repaired adapters were ligated after adenylation of the 3’ends followed by enrichment by limited cycle PCR ...
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bioRxiv - Biochemistry 2023Quote: ... Library pools were mixed with Illumina PhiX control libraries and sequenced using the Illumina MiSeq or HiSeq platforms (Illumina, San Diego, CA, USA) at JAMSTEC or Macrogen (Seoul ...
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bioRxiv - Molecular Biology 2023Quote: ... and the pooled library (from 27 RNA samples) was loaded to an SP flow cell and sequenced on the NovaSeq 6000 platform (Illumina; San Diego, CA) with 2 x 150 bp paired-end sequencing ...
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bioRxiv - Bioengineering 2023Quote: ... Coates Genomics Sequencing Laboratory at UC Berkeley using the 300 PE MiSeq platform and TruSeq SBS Kit v3-HS (Illumina, San Diego, CA). Illumina FASTQ files were demultiplexed ...
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bioRxiv - Neuroscience 2023Quote: ... We produced libraries for 31-mRNA sequencing using 200 ng of purified RNA per sample processed with a TruSeq Stranded RNA Kit (Illumina, San Diego, CA) according to the manufacturer’s protocol ...
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bioRxiv - Genomics 2023Quote: ... All samples were sequenced in the MSU RTSF Genomics core with paired-end 150 bp reads on an HiSeq 6000 system (Illumina, San Diego, CA). Reads were quality and adapter trimmed using trimmomatic version 0.38 62 ...
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bioRxiv - Genomics 2023Quote: ... The resulting sequencing libraries were sequenced by the Institute for Integrative Genome Biology Core facility at the University of California at Riverside using the MiSeq instrument with 100 bp paired-end reads (Illumina, San Diego, CA).
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bioRxiv - Cell Biology 2023Quote: ... and then subjected to the transcriptomic sequencing by Beijing Genomics Institute (BGI, Shenzhen, China) on an Illumina HiSeq 2000 sequencing system (Illumina, San Diego, CA). All the detected mRNAs were fragmented into short fragments of approximately 200 bp ...
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bioRxiv - Immunology 2023Quote: ... Samples were randomly grouped and run with two libraries per sequencing run on three NextSeq High Output 150 cycle reagent kits (Illumina, San Diego, CA), with 1% PhiX ...
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bioRxiv - Systems Biology 2023Quote: ... The final library was submitted for sequencing on an Illumina sequencer (different sequencers were used, namely NovaSeq, HiSeq, NextSet, and MiSeq; all from Illumina, San Diego, CA). 50 bp single-end sequencing was performed in all cases to cover the barcode region ...
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bioRxiv - Evolutionary Biology 2023Quote: We sequenced the targeted Y-chromosome regions in 5,020 samples using the YHseqY3000 panel on the Illumina platform (Illumina, San Diego, CA, USA) and used the BWA v.0.7.13 (Li and Durbin 2009 ...
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bioRxiv - Cell Biology 2023Quote: ... The library was prepared with PCR products pooled in equimolar amounts following the manufacture’s protocol and loaded in a Micro MiSeq Reagent Kit v2 (500-cycles) (Illumina, San Diego, CA, USA) on a MiSeq platform (Illumina) ...
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bioRxiv - Microbiology 2023Quote: ... Rapid DNA extraction from microbial isolates was adapted from Köser et al.63 and sequenced as previously described28 on the NovaSeq 6000 Sequencing System (Illumina, San Diego, CA, USA), 2×150bp paired end to approximately 100X coverage per genome ...
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bioRxiv - Evolutionary Biology 2023Quote: ... multiplexed and sequenced as 150 bp paired-end reads using two lanes on an Illumina Hi-Seq 2000 (Illumina, San Diego, CA, USA) through Novogene (Beijing ...
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bioRxiv - Microbiology 2023Quote: ... cDNA libraries were prepared using Illumina TruSeq Stranded Total RNA with the Ribo-Zero Library Prep Kit (Illumina Inc., San Diego, CA USA) and RNA sequencing was performed by Psomagen (Psomagen Inc. ...
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bioRxiv - Microbiology 2023Quote: ... We prepared DNA libraries employing the Nextera XT library preparation kit and the Nextera XT v2 index kit (Illumina, San Diego, CA, USA). The library was sequenced on a HiSeq4000 (Illumina ...
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bioRxiv - Synthetic Biology 2023Quote: ... Sequencing was performed on an Illumina MiSeq instrument using the 300-cycle MiSeq Reagent Kit v2 (Illumina, San Diego, CA, USA, MS102-2002).
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bioRxiv - Cell Biology 2023Quote: ... were used instead of the primers that came with the SMARTer Stranded Total RNA HI Mammalian kit to allow for sequencing on the NovaSeq (Illumina, San Diego, CA) by the Biopolymers Facility at Harvard Medical School.
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bioRxiv - Genomics 2023Quote: ... and it was subsequently sequenced using an Illumina Genome Analyzer IIx with the TruSeq SBS 36-Cycle Kit (Illumina, San Diego, CA, USA) for 72 bp PE reads ...
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bioRxiv - Genomics 2023Quote: ... The libraries were sequenced at a target depth of 20,000 paired-end 150 bp reads per sample using a MiSeq machine (Illumina, San Diego, CA, USA). Reads were filtered by length <150 bp and using a maximum expected error threshold of 1.0 ...
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bioRxiv - Microbiology 2023Quote: ... Prepared libraries were sequenced to an expected sequencing depth of 100,000 paired-end reads per sample on an Illumina MiSeq instrument (Illumina Inc, San Diego, CA) using a 600 (2×300 base pair ...
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bioRxiv - Microbiology 2023Quote: ... The pooled library (600 μL at 20 picomolar) was denatured and sequenced on an Illumina MiSeq sequencer (Illumina Inc., San Diego, CA, US).
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bioRxiv - Microbiology 2023Quote: ... Separate libraries for the two experimental conditions belonging to three independent experiments were prepared with the TruSeq RNA Sample Prep kit (Illumina, San Diego, CA) according to the manufacturer’s protocol ...
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bioRxiv - Genomics 2023Quote: ... paired-end libraries were prepared from total RNA by ribosomal depletion using the Ribo-Zero Gold plant rRNA removal kit (Illumina, San Diego, CA). Samples were processed following the manufacturer’s instructions.
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bioRxiv - Genomics 2023Quote: ... Libraries were pooled in groups of twelve and sequenced (twelve samples per lane) on an Illumina HiSeq 2500 ultra high-throughput DNA sequencing platform (Illumina, San Diego, CA) at the DNA Core facility at the University of Missouri ...
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bioRxiv - Genomics 2023Quote: ... we normalize all libraries to 10mM and pool all for sequencing using paired-end 2x150 bp reads over one lane of an S4 flowcell on an Illumina NovaSeq 6000 DNA sequencer (Illumina, San Diego, CA) run at the UCSD Institute for Genomic Medicine Genomics Center ...
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bioRxiv - Evolutionary Biology 2023Quote: ... and were then sent to the Swedish National Genomics Infrastructure’s SNP & SEQ platform in Uppsala for Illumina HiSeq 2500 sequencing (8 lanes; 126 bp Paired-End sequencing; Illumina, San Diego, CA, USA).
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bioRxiv - Developmental Biology 2023Quote: ... Total RNA-Seq libraries were generated from 150-300 ng of total RNA using TruSeq Stranded Total RNA LT Sample Prep Kit with Ribo-Zero Gold (Illumina, San Diego, CA), according to manufacturer’s instructions ...
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bioRxiv - Developmental Biology 2023Quote: ... All the libraries were sequenced in a PE150 mode (Pair-End for 150bp read) in the X Ten instrument (Illumina, San Diego, CA).
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bioRxiv - Microbiology 2023Quote: ... DNA extracts were used for metagenomic library preparation as described previously (32) using Illumina Nextera DNA Library Preparation Kit (Illumina, San Diego, CA) and sequenced with 2×150 bp paired-end reads on a NovaSeq platform (Illumina).
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bioRxiv - Cancer Biology 2023Quote: ... and the RNA-seq analysis was performed using Illumina HiSeq2500 system using paired-end sequencing chemistry with 100bp read length (Illumina, San Diego, CA) at the Finnish Functional Genomics Centre ...
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bioRxiv - Cell Biology 2023Quote: ... Editing frequencies in samples collected following transplantation were assessed via deep sequencing of PCR amplified libraries of the CD33 gRNA target region (Table S1) on an Illumina Miseq (Illumina, San Diego, CA) via 300bp paired end reads and a median sequencing depth of 100,000 reads/gRNA target site ...
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bioRxiv - Neuroscience 2023Quote: ... RNA samples with RQNs ranging from 8 to 10 were used for RNA library preparation with the TruSeq Stranded mRNA Library Prep Kit (Illumina, San Diego, CA). Briefly ...
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bioRxiv - Plant Biology 2024Quote: RNA samples were submitted to the Cornell Institute for Biotechnology Genomics Center for 3’ mRNA-seq library construction using a QuantSeq FWD kit (Lexogen, Vienna, Austria) followed by 1×75 bp sequencing on an Illumina NextSeq500 (Illumina, Hayward, CA, USA). Sequencing statistics were calculated with v0.15.0 seqkit stats with parameters -j 10 -T(Shen et al. ...
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bioRxiv - Cancer Biology 2024Quote: ... The two final libraries were diluted to 2nM and pooled for paired-end sequencing 51+8+0+71 cycles in one NovaSeq 6000 S4 lane (Illumina, San Diego, CA) at the SNP&SEQ Technology Platform (Uppsala ...
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bioRxiv - Microbiology 2024Quote: ... and amplicon sequencing were performed using 300-bp paired-end sequencing on the MiSeq Reagent Kit v3 (Illumina Inc., San Diego, CA, USA) and Illumina MiSeq platform (Illumina Inc. ...
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bioRxiv - Microbiology 2024Quote: ... Sequencing of the metagenomic DNA was performed at the Genomics Core at the University of Tennessee using the NovaSeq 6000 platform (NovaSeq 6000 SP reagent kit, Illumina, San Diego, CA) to generate metagenomic datasets with 2 ξ 250 bp read length (Table S2).
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bioRxiv - Microbiology 2024Quote: ... Paired-end sequencing was carried out on an Illumina MiniSeq system according to the manufacturer’s instructions using a 300-cycle Mid or High kit (Illumina, San Diego, CA, USA), depending on the number of samples in each pool.
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bioRxiv - Microbiology 2024Quote: Whole-genome sequencing was performed on each sample using Illumina Technology (MiSeq and HiSeq 2500) and Nextera XT library preparation kits as instructed by the manufacturer (Illumina, San Diego, CA). Fastq files (raw sequencing data ...
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bioRxiv - Immunology 2024Quote: Paired-end sequencing of the hypervariable V4 region of the 16S rRNA gene was performed with the 515 forward and 806 reverse primers using an Illumina MiSeq instrument (Illumina, San Diego, CA) to produce 150 base-paired reads ...