Labshake search
Citations for Illumina :
4601 - 4650 of 10000+ citations since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
-
bioRxiv - Neuroscience 2023Quote: ... culminating in a strand-specific total RNA-Seq library created using the VAHTSTM total RNA-Seq v2 Library Prep Kit from Illumina (Vazyme Biotech). The resulting libraries were then sequenced using the Illumina HiSeq 2500 following the manufacturer’s protocol ...
-
bioRxiv - Molecular Biology 2023Quote: ... mRNA and sRNA libraries were constructed by Illumina trueseq stranded mRNA library preparation kit (Cat ...
-
bioRxiv - Microbiology 2023Quote: ... the libraries were sequenced on the Illumina MiSeq platform (Illumina, Inc., San Diego, USA) by paired-end sequencing of 300 bp ...
-
bioRxiv - Microbiology 2023Quote: ... and sequenced on an Illumina HiSeq 4000 platform (Illumina, San Diego, CA, USA) in 2×150bp paired-end with the aim of 1.5 Gbp average setup at the Genomics Core Facility (EMBL ...
-
bioRxiv - Molecular Biology 2023Quote: ... mRNA and sRNA libraries were constructed by Illumina trueseq stranded mRNA library preparation kit (Cat. No. 20020594) and TruSeq small RNA sample preparation guide (Illumina, San Diego, CA, United States) as per the manufacturer’s protocol ...
-
bioRxiv - Molecular Biology 2023Quote: ... ribosomal RNA was removed by using the Ribo-Zero rRNA Removal Kit (Illumina, San Diego, CA, USA). From the rRNA depleted total RNA ...
-
bioRxiv - Neuroscience 2023Quote: ... all 30 libraries were pooled and diluted to 3.5 nM for sequencing on one lane of a Hiseq 3000 sequencer (Illumina), using a single read 50 bp and dual indexed sequencing strategy.
-
bioRxiv - Microbiology 2023Quote: ... Amplicon sequencing was carried out using an Illumina MiSeq platform (Illumina, CA, USA) generating 2×250 bp paired-end reads ...
-
bioRxiv - Microbiology 2023Quote: The sequencing library was prepared using the TruSeq Stranded mRNA Sample Prep Kit and sequenced on NovaSeq 6000 (Illumina, San Diego, CA, USA), yielding more than 6G bases of sequence for each sample ...
-
bioRxiv - Microbiology 2023Quote: ... NGS was performed on a NovaSeq 6000 system (Illumina, San Diego, CA, USA) for 25 M reads per library ...
-
bioRxiv - Microbiology 2023Quote: ... 150 bp paired-end fragments were sequenced using the NovaSeq6000 sequencing platform (Illumina). Reads for each sample were collected over two individual sequencing runs.
-
bioRxiv - Microbiology 2023Quote: ... Libraries were run on Novaseq 6000 (Illumina) on NovaSeq 6000 SP Reagent Kit v1.5 (100 cycles ...
-
bioRxiv - Microbiology 2023Quote: ... mRNA enrichment was achieved using the Ribo-Zero Kit (Illumina) and libraries were constructed using the Illumina Tru-seq stranded mRNA sample prep kit ...
-
bioRxiv - Microbiology 2023Quote: ... The prepared library was sequenced using a MiSeq sequencing system with a V3 reagent kit (300 × 2 bp; Illumina, 4–6 samples). Lake Biwa viral contigs/genomes (LBVs ...
-
bioRxiv - Microbiology 2023Quote: ... mRNA sequencing was then performed on an Illumina NextSeq 550 sequencer using the NextSeq High Output Kit v2 sequencing reagent kit. Primary data analysis (i.e. base-calling) was performed using ‘bcl2fastq’ software (version 2.17.1.14, Illumina). Characteristic fragment parameters are summarised in Supplementary Table 2.
-
bioRxiv - Microbiology 2023Quote: ... and then indexed using a Nextera XT DNA Library Preparation Kit (Illumina; San Diego, CA). Finally ...
-
bioRxiv - Microbiology 2023Quote: We closely followed all manufacturer recommendations for the Illumina sequencing platform (Illumina Inc., San Diego, USA). Pooled genomic DNA samples were used to sequence libraries constructed using the NEBNext Ultra II Library Prep Kit (NEB ...
-
bioRxiv - Microbiology 2023Quote: ... Library preparation was performed using the Nextera XT DNA Library Preparation Kit (Illumina; San Diego, CA) with 1.2 ng/μL of input material ...
-
bioRxiv - Microbiology 2023Quote: ... Samples were pooled into equal molar proportions and sequenced on the Illumina MiSeq platform (Illumina; San Diego, CA).
-
bioRxiv - Microbiology 2023Quote: ... using Nextera DNA CD indexes (Illumina Catalog No. 20018708). DNA yield was measured with a Qubit High Sensitivity dsDNA assay kit (ThermoFisher Catalog No ...
-
bioRxiv - Microbiology 2023Quote: ... Libraries were pooled into a 4 nM solution and sequenced on the Illumina MiSeq platform (Illumina; San Diego; CA) with a target sequencing yield of 500MB-1GB per virome.
-
bioRxiv - Microbiology 2023Quote: ... We used the Nextera XT kit (Illumina, San Diego, CA, USA) to prepare the metagenomic libraries ...
-
bioRxiv - Microbiology 2023Quote: The sequences of the KSHVLRI BAC and of BAC16 genomes were verified by Illumina deep sequencing ...
-
bioRxiv - Microbiology 2023Quote: ... WGS libraries were constructed with the NEBNext Ultra DNA Library Preparation Kit (Illumina, San Diego, CA). Sequencing was performed on the Illumina MiSeq instrument using a MiSeq v2 sequencing kit to obtain 250-bp paired-end reads.
-
bioRxiv - Microbiology 2023Quote: ... using TruSeq SBS Kit v3 - HS (Illumina) for 50 cycles ...
-
bioRxiv - Microbiology 2023Quote: ... Sequencing was performed on HiSeq 2500 (Illumina) using TruSeq SBS Kit v3 - HS (Illumina ...
-
bioRxiv - Microbiology 2023Quote: ... 1 μl of forward and 1 μl of reverse 25 μM PCR primers (Illumina), and 0.5 μl of Phusion high-fidelity DNA polymerase (New England Biolabs) ...
-
Dual RNA-seq identifies proteins and pathways modulated during Clostridioides difficile colonisationbioRxiv - Microbiology 2023Quote: ... Single-end sequencing was performed using a NextSeqR 500/550 High Output Kit v2 (75 cycles) on an Illumina NextSeq™500 system (Illumina, USA). Bacterial controls were sequenced using single-end sequencing with a MiSeq™ v3 cartridge (150 cycles ...
-
bioRxiv - Microbiology 2023Quote: ... Ribosomal RNA was depleted using the RiboZero rRNA Removal Kits for Gram-positive bacteria and/or for human/mouse/rat (Illumina). 300 bp-insert RNA-seq Illumina libraries were constructed using ∼1.0 μg of enriched mRNA that was fragmented then used for synthesis of strand-specific cDNA using the NEBnext Ultra Directional RNA Library Prep Kit (NEB-E7420L) ...
-
bioRxiv - Microbiology 2023Quote: DNA libraries were prepared using the Nextera XT DNA Library Preparation Kit (Illumina) and IDT Unique Dual Indexes with total DNA input of 1 ng ...
-
bioRxiv - Microbiology 2023Quote: ... Ribosomal RNA depletion was performed using the Bacteria RiboZero kit (Illumina). From rRNA-depleted RNA ...
-
bioRxiv - Microbiology 2023Quote: ... Libraries were prepared using the Nextera XT DNA library preparation kits (Illumina) and pooled ...
-
bioRxiv - Microbiology 2023Quote: The influenza genome was amplified from RNA extracted from virus isolates using a multi-segment RT-PCR with universal primers (39, 40) and sequenced using Nextera DNA library preparation and MiSeq (PE300) sequencer (Illumina, San Diego, CA, USA), as previously described (13) ...
-
bioRxiv - Microbiology 2023Quote: ... 150 bp paired read sequences were generated on the Nextseq 500 (high output) sequencer according to manufacturer’s instructions (Illumina). The multiplexing level was 10 samples per lane ...
-
bioRxiv - Microbiology 2023Quote: ... Whole plasmid sequences were assembled using Unicycler v0.4.8 (Wick et al., 2017) and Flye v2.6 (Lin et al., 2016) and polished by Illumina reads using Pilon v1.23 (Walker et al. ...
-
bioRxiv - Microbiology 2023Quote: ... and sequenced (paired-end, 150 bp) on the NovaSeq S4 platform (Illumina) by the DNA Technologies and Expression Analysis Core at the University of California ...
-
bioRxiv - Microbiology 2023Quote: ... Libraries were sequenced on the MiSeq platform (Illumina) by the DNA Technologies and Expression Analysis Core at the University of California ...
-
bioRxiv - Microbiology 2023Quote: ... genomic DNA libraries were prepared using the Nextera XT Library Prep Kit (Illumina, San Diego, USA) following the manufacturer’s protocol with the following modifications ...
-
bioRxiv - Microbiology 2023Quote: ... The libraries were prepared using Nextera XT DNA Sample Preparation Kit and sequenced on MiSeq or NovaSeq 6000 platform (Illumina, San Diego, CA, USA). Raw reads were quality- and adaptor-trimmed using Trimmomatic v0.39 (Bolger at al. ...
-
bioRxiv - Microbiology 2023Quote: ... The retained libraries were sequenced using MiSeq V3 (2 × 300 bp) (Illumina).
-
bioRxiv - Microbiology 2023Quote: ... Basecalling and demultiplexing were done on the sequencer using the manufacturer’s software (Illumina). Reads were then trimmed and filtered using Alien trimmer in order to remove adapters and bases under q20 quality score ...
-
bioRxiv - Microbiology 2023Quote: ... Illumina fastq files data were also obtained from Illumina sequencing at the National Reference Centre for respiratory viruses (Institut Pasteur Paris) ...
-
bioRxiv - Microbiology 2023Quote: ... version 3 (2×300 bp read length; Illumina, San Diego, CA, USA).
-
bioRxiv - Microbiology 2023Quote: ... Libraries were prepared using a Nextera XT DNA sample preparation kit (Illumina) according to the manufacturer’s protocol ...
-
bioRxiv - Microbiology 2023Quote: ... The resulting libraries were sequenced in a paired-end format on a NovaSeq 6000 (Illumina).
-
bioRxiv - Microbiology 2023Quote: ... for each sample 2 μl of 5’ adapter (Illumina) (total 12 μl ...
-
bioRxiv - Microbiology 2023Quote: ... 2 μl of the v1.5 sRNA 3’ adapter (Illumina) was mixed with the 14 μl eluate of the previous step in a 200 μl nuclease-free ...
-
bioRxiv - Microbiology 2023Quote: BS and NBS reads were subjected to adaptor trimming (Illumina paired-end sequencing adapters) using Cutadapt v1.2.1 52 with parameter O = 3 ...
-
bioRxiv - Microbiology 2023Quote: ... 4 μl of the 3’-5’-adapter-ligated RNA was mixed with barcoded RT primers (Illumina) and cDNA synthesis was performed using SuperScript™ II Reverse Transcriptase (Invitrogen ...
-
bioRxiv - Microbiology 2023Quote: ... The samples were prepared for sequencing using the Nextera XT DNA Library Preparation Kit (Illumina) and paired-end sequenced (2 × 300 bp ...