Labshake search
Citations for Illumina :
4801 - 4850 of 10000+ citations since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Molecular Biology 2023Quote: ... K-mer filtering (which removes reads with a 31-mer match to an Illumina spike-in), and Entropy filtering (>0.90 ...
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bioRxiv - Molecular Biology 2023Quote: ... using Illumina MiSeq Reagent Kit V3 (Illumina, USA). Reads were quality-controlled using BBduk for adaptor trimming ...
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bioRxiv - Molecular Biology 2023Quote: ... DNA libraries for shotgun metagenomic sequencing of viral concentrates were prepared using an Accel-NGS® 1S Plus DNA Library Kit (Swift Biosciences, USA) and sequenced on an Illumina MiSeq platform (Illumina, USA) using Illumina MiSeq Reagent Kit V3 (Illumina ...
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bioRxiv - Molecular Biology 2023Quote: ... The sample libraries were prepared for sequencing according to the HiSeq Reagent Kit Preparation Guide (Illumina, San Diego, CA, USA). Briefly ...
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bioRxiv - Molecular Biology 2023Quote: ... The library of RNA-seq was generated and sequenced on an Illumina HiSeq platform (Illumina, San Diego, CA, USA). Gene expression levels were estimated by RSEM (Li & Dewey ...
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bioRxiv - Molecular Biology 2023Quote: ... RNA-seq libraries for yeast (n = 3 per tested condition) and neuroblastoma cells (n = 3 per tested condition) were prepared according to the TruSeq stranded mRNA protocol (Illumina) and 101-bp single-end reads produced on an Illumina NovaSeq 6000 instrument ...
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bioRxiv - Molecular Biology 2023Quote: Novaseq 6000 (Illumina) was used for transcriptome sequencing to understand further the molecular response mechanism of Cr detoxification in C ...
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bioRxiv - Molecular Biology 2023Quote: BCL files obtained from Illumina HiSeq2500 were converted to FastQ and demultiplexed based on the index primer sequences ...
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bioRxiv - Molecular Biology 2023Quote: ... Library construction of 300 ng total RNA for each sample was made using KAPA Stranded mRNA-Seq Kit (Illumina) (Kapa Biosystems) ...
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bioRxiv - Molecular Biology 2023Quote: ... instrument using the TruSeq SR Cluster Kit V4-cBot-HS (Illumina) to generate 51 bp single-end reads sequencing with v4 chemistry ...
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bioRxiv - Molecular Biology 2023Quote: ... The libraries were sequenced by Illumina NovaSeq and 30 million reads were collected for each sample ...
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bioRxiv - Molecular Biology 2023Quote: ... rRNA depletion was conducted with the Ribo-Zero Gold rRNA Removal Kit (Human/Mouse/Rat) (Illumina) for human and mouse samples and with Caenorhabditis elegans Ribo-Seq riboPOOLs (siTOOLs Biotech ...
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bioRxiv - Molecular Biology 2023Quote: Selected FLIPS proviral amplicons underwent NGS library preparation using the Nextera XT DNA Library Preparation Kit (Illumina, #FC-131-1096) with indexing of 96-samples per run according to the manufacturer’s instructions (Illumina ...
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bioRxiv - Molecular Biology 2023Quote: ... Accuracy metrics on the new HIV-PULSE assay compared to FLIPS and STIP-Seq reference proviruses (sequenced using Illumina technology) were calculated using pomoxis (v0.3.6 ...
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bioRxiv - Molecular Biology 2023Quote: ... rRNAs were depleted with the Ribo-Zero Gold rRNA Removal Kit (Human/Mouse/Rat) (Illumina) for human and mouse samples and with Caenorhabditis elegans Ribo-Seq riboPOOLs (siTOOLs Biotech ...
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bioRxiv - Molecular Biology 2023Quote: ... The pooled library was sequenced on a MiSeq Illumina platform via 2×150 nt paired-end sequencing using the 300 cycle v2 kit (Illumina, #MS-102-2002).
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bioRxiv - Molecular Biology 2023Quote: ... rRNA-depleted by a Ribo-Zero Gold rRNA Removal Kit (Human/Mouse/Rat) (Illumina), and reverse transcribed by ProtoScript II Reverse Transcriptase (New England Biolabs) ...
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bioRxiv - Molecular Biology 2023Quote: ... Deep sequencing (Hiseq4000, Illumina) was conducted by the high throughput genomics team of the Wellcome Trust Centre for Human Genetics (WTCHG) ...
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bioRxiv - Molecular Biology 2023Quote: DNA libraries were sequenced on HiSeq X (Illumina) with a paired-end 150-bp option.
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bioRxiv - Molecular Biology 2023Quote: ... RNA libraries were prepared according to manual of Truseq small RNA library prep kit (Illumina). Deep sequencing (Hiseq4000 ...
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bioRxiv - Molecular Biology 2023Quote: ... The other RNA-Seq libraries were generated by a TruSeq Stranded mRNA Library Prep kit (Illumina). The DNA libraries were sequenced on a HiSeq 4000 with 50-bp single-read mode (s-µg experiments ...
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bioRxiv - Molecular Biology 2023Quote: ... with indexing of 96-samples per run according to the manufacturer’s instructions (Illumina, #FC-131-2001), except that input and reagents volumes were halved and libraries were normalized manually ...
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bioRxiv - Molecular Biology 2023Quote: ... libraries were pooled and sequenced on NovaSeq S4 2×150-bp run (Illumina). Mapping to the human hg38 genome and peak calling were performed using the ENCODE ATAC-seq pipeline.
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bioRxiv - Molecular Biology 2023Quote: ... DNA libraries were sequenced on HiSeq 4000 (Illumina) with a single-end 50 bp option.
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bioRxiv - Molecular Biology 2023Quote: ... Samples were treated by RiboZero (Illumina) or Ribominus (Thermo Scientific ...
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bioRxiv - Molecular Biology 2023Quote: ... rRNA removal reagents and libraries were prepared using TruSeq Stranded mRNA kit (Illumina). We strictly followed the protocol except that we started directly at the fragmentation step after the rRNA removal step and we adjusted the number of cycle required to amplify libraries ...
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bioRxiv - Microbiology 2023Quote: ... Eighteen pM libraries were clustered in a high-output flow cell using HiSeq Cluster Kit v4 on a cBot (Illumina). After cluster generation ...
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bioRxiv - Microbiology 2023Quote: ... RNA samples with RQNs ranging from 8 to 10 were used for RNA library preparation with the TruSeq Stranded mRNA Library Prep Kit (Illumina, San Diego, CA). Briefly ...
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bioRxiv - Microbiology 2023Quote: ... and then sequenced with the MiSeq platform using a MiSeq Reagent Kit v3 (2×300 bp paired-end) (Illumina), yielding 3,272,078 paired-end reads ...
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bioRxiv - Microbiology 2023Quote: ... using the HiSeq2500 platform (Illumina) for 56 bps single-end sequencing ...
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bioRxiv - Microbiology 2023Quote: ... The sequence library was prepared with Nextera Mate Pair Sample Prep Kit (Illumina) according to the manufacture’s protocol ...
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bioRxiv - Microbiology 2023Quote: ... the flow cell was loaded onto HiSeq 2500 for sequencing using HiSeq SBS kit v4 (Illumina). DNA was sequenced from both ends (paired-end ...
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bioRxiv - Molecular Biology 2023Quote: ... the resulting library was run on a Miniseq sequencer (Illumina, USA), using the MiniSeq High Output Reagent Kit (150-cycles).
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bioRxiv - Microbiology 2023Quote: Whole-genome sequencing for strains AKK101 and 3336 was performed by the Virginia Commonwealth University Genomics Core using the MiSeq platform (Illumina, San Diego, CA, USA) after the construction of a paired-end sequencing library using the Illumina Nextera XT DNA sample preparation kit (Illumina ...
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bioRxiv - Microbiology 2023Quote: ... Libraries were constructed using the TruSeq Nano library kit (Illumina, Inc., San Diego, CA, USA) and shotgun sequencing was performed in four runs using an Illumina HiSeq 2500 ...
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bioRxiv - Microbiology 2023Quote: ... according to the manufacturer’s instructions (Illumina, San Diego, CA, USA). Sequencing was carried out using a 2 × 150 paired-end (PE ...
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bioRxiv - Microbiology 2023Quote: ... Genomic DNA libraries were prepared for whole genome sequencing using the Tagmentation-based library prep kit according to the manufacturer’s instructions (Illumina Inc, San Diego, CA, USA). Next ...
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bioRxiv - Molecular Biology 2023Quote: ... 2.5µL TDE1 Tagment DNA Enzyme (Illumina) was added to each well (final volume = 50µL) ...
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bioRxiv - Molecular Biology 2023Quote: ... BCL files from Illumina sequencing were first converted to fastq files with bcl2fastq v2.16 (Illumina). Reads were filtered to include only those associated valid cell barcode combinations ...
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bioRxiv - Microbiology 2023Quote: ... a targeted bait-enrichment approach was used to enrich RNA-seq libraries for sequencing on the MiSeq platform (Illumina, San Diego, CA, USA). Hantavirus sequences from each genomic segment (S ...
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bioRxiv - Microbiology 2023Quote: ... This allowed for extensive multiplexing of samples on a single sequencing lane of the MiSeq (Illumina) platform after quantification and normalisation ...
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bioRxiv - Microbiology 2023Quote: ... Both primer sets were tagged with 10 bp oligonucleotides for multiplexing Nextera™ DNA Sample Prep Kit (Illumina®-Compatible ...
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bioRxiv - Microbiology 2023Quote: ... genomic reads from Illumina run SRR341961 of the original study (54 ...
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bioRxiv - Microbiology 2023Quote: ... The quantified and denatured libraries were sequenced using paired-end 2×250-bp chemistry with 5% PhiX as an internal control on the Illumina MiSeq 2000 platform (Illumina Inc., USA). The quality-filtered reads were de-novo assembled using SPAdes (version 3.11.1) ...
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bioRxiv - Molecular Biology 2023Quote: ... The libraries were treated with Illumina Free Adapter Blocking Reagent (Illumina, San Diego, CA, USA) and were sequenced on Illumina NovaSeq 6000 using NovaSeq 6000 S1 Reagent Kit (150 cycles ...
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bioRxiv - Molecular Biology 2023Quote: ... Ribosomal RNAs (rRNAs) were removed using Ribo-Zero rRNA removal kit (Illumina). rRNA-free RNAs were controlled on a Fragment Analyzer (Agilent formerly Advanced Analytical ...
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bioRxiv - Molecular Biology 2023Quote: ... and sequenced on an Illumina NovaSeq 6000 system using the NovaSeq 6000 S4 Individual Lane Loading Reagent kit (#20028313, Illumina; 150 cycles, paired end run 1x 111 bp) with an average of 2×107 reads per sample ...
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bioRxiv - Microbiology 2023Quote: Genomic libraries of clinical GBS isolates were prepared using Nextera XT kits (Illumina, San Diego, CA) and sequenced using the Illumina MiSeq Reagent Kit v3 (600-cycle) ...
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bioRxiv - Microbiology 2023Quote: ... Genomic DNA of samples 161-U7 and 161-I0 were sequenced at Macrogen on a Novaseq 6000 sequencer (Illumina, San Diego, CA) to obtain 151 cycle paired-end libraries with an insert-size of 550 bp using TruSeq Nano DNA library preparation ...
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bioRxiv - Microbiology 2023Quote: ... and cDNA libraries were constructed using the TruSeq Stranded mRNA kit (Illumina), after which they were purified using the Zymoclean Gel DNA Recovery Kit (Zymo Research) ...