Labshake search
Citations for Illumina :
4101 - 4150 of 4662 citations for Genz 644282 CAS 529488 28 6 99% since 2020
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Evolutionary Biology 2024Quote: ... An initial amount of DNA ranging from 300 to 500 ng was used for library construction using all standard kit reagents from the Illumina DNA prep (M) Tagmentation (Illumina, San Diego, CA), altogether with Illumina commercial indexes (IDT for Illumina DNA/RNA UD Indexes set A ...
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bioRxiv - Genomics 2024Quote: ... Libraries were generated using the Illumina Ribo-Zero Plus rRNA Depletion Kit with IDT for Illumina RNA UD Indexes (Illumina, San Diego, CA). All samples were processed according to the manufacturer’s instructions ...
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bioRxiv - Genomics 2024Quote: ... Illumina short reads of 150 base pairs (bp) in paired-end (PE) format were sequenced using the Novaseq 6000 platform (Illumina, San Diego, CA) at Novaseq Inc ...
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bioRxiv - Genomics 2024Quote: Illumina short-read sequencing libraries were prepared with 1 μg of high-quality RNA and the TruSeq Stranded mRNA Library Prep Kit (Illumina, San Diego, CA) according to manufacturer’s protocol ...
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bioRxiv - Biochemistry 2024Quote: ... Each of the libraries were sequenced on the Illumina NextSeq 500 generating paired-end 151 bp reads using approximately 31% of the NextSeq 500 High-Output v2.5 Reagent Kit (300-cycle) (Illumina, San Diego, CA, USA).
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bioRxiv - Microbiology 2024Quote: ... with up to 500 ng DNA input following the manufacturer’s protocol using unique dual-index 10 bp barcodes with Nextera® adapters (Illumina, San Diego, CA). All libraries were pooled in equal abundance ...
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bioRxiv - Neuroscience 2024Quote: RNA-seq libraries were sequenced at Canada’s Michael Smith Genome Sciences Centre (BC Cancer Research, Vancouver, BC, Canada) using the Illumina HiseqX (Illumina Inc., San Diego, CA), and 60-120 million paired-end reads (150 bp ...
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bioRxiv - Microbiology 2024Quote: 16S rRNA gene V3-V4 region amplicon libraries were constructed using a dual-indexing method at the University of Wisconsin Biotechnology Center and sequenced on a MiSeq with a 2x300 bp run format (Illumina, San Diego, CA). Reagent-only negative controls were carried through the DNA extraction and sequencing process ...
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bioRxiv - Microbiology 2024Quote: ... The pool was then rebalanced and sequenced as 150 paired-end reads on a NovaSeq 6000 S4 flowcell (Illumina Inc., San Diego CA). Sequencing output from the NovaSeq platform was converted to fastq format and demultiplexed using Illumina Bcl2Fastq 2.20.0.
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bioRxiv - Neuroscience 2024Quote: RNA from right brain hemispheres was extracted and cDNA libraries were prepared and sequenced by the University of Chicago Genomics Facility using an Illumina NovaSeqX (Illumina, San Diego, CA) with a sequencing depth of 50-60 million paired end reads per sample as described previously[45] ...
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bioRxiv - Pathology 2024Quote: ... 200 ng RNA was used to prepare sequencing libraries using the TruSeq Stranded Total RNA with RiboZero following the low sample protocol as per manufacturer’s recommendations (Illumina, San Diego, CA, USA), as previously described43 ...
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bioRxiv - Pathology 2024Quote: ... where clusters were formed and sequenced in a 1x75 single-read sequencing run on a NextSeq 2000 sequencer (Illumina; San Diego, CA, USA). Read cleaning was performed with PrinSeq ...
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bioRxiv - Microbiology 2024Quote: ... Then libraries with different indices were multiplexed and loaded on an Illumina HiSeq instrument according to manufacturer’s instructions (Illumina, San Diego, CA, USA).
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bioRxiv - Cancer Biology 2024Quote: ... RNA sample library and RNA-sequencing were performed by the Genomics Core Laboratory at Weill Cornell Medicine with Illumina TruSeq Stranded mRNA Sample Library Preparation kit (Illumina, San Diego, CA), according to the manufacturer’s instructions ...
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bioRxiv - Cancer Biology 2024Quote: ... Single-indexed and multiplexed samples were run on an Illumina Next Seq 500 sequencer using a NextSeq 500 v2 kit (FC-404–2005; Illumina, San Diego, CA) for paired-end sequencing ...
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bioRxiv - Plant Biology 2024Quote: ... Samples were sequenced on a single run of a HiSeq 2000 as 50 nucleotide single-end reads on an Illumina HiSeq 200 (Illumina, San Diego, CA) at the University of Minnesota BioMedical Genomics Center resulting in an average of 8700000 reads per sample ...
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bioRxiv - Genetics 2024Quote: ... The TrueMethyl converted DNA samples were then eluted in 10 µL and then processed through the Illumina Infinium MethylationEPIC BeadChip array (Illumina, San Diego, CA) protocol ...
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bioRxiv - Evolutionary Biology 2024Quote: ... We prepared libraries for low-coverage whole genome sequencing using a tagmentation based protocol and the Illumina Tagment DNA TDE1 Enzyme and Buffer Kit (Illumina, San Diego, CA). Briefly ...
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bioRxiv - Microbiology 2024Quote: ... Double-stranded DNA libraries were then sequenced using the HiSeq X10 with 150 bp paired-end chemistry (Illumina, San Diego, CA, United States).
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bioRxiv - Microbiology 2024Quote: ... RNA from the two groups that had been inoculated with bacteria were additionally processed with a Ribo-Zero rRNA Removal Kit (Bacteria) (Illumina, San Diego, CA). A Kapa Biosystems library preparation kit was used to prepare a standard-sized library with custom Unique Dual indexes ...
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bioRxiv - Cell Biology 2024Quote: ... The libraries for RNA sequencing were sequenced with 2 × 150-bp paired-end reads on a NovaSeq6000 (Illumina Inc., San Diego, CA, USA). The obtained sequencing data were analyzed using RaNA-seq (61) ...
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bioRxiv - Synthetic Biology 2024Quote: ... we performed 12 cycles of pre-amplification PCR and 12 cycles of index PCR and used 0.002 ul TDE1 Tn5 enzyme per cell (Illumina Tagment DNA TDE1 Enzyme and Buffer Kits; Illumina, San Diego, CA, USA). Sequencing was performed using an SE100 sequencing kit (MGI) ...
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bioRxiv - Genomics 2024Quote: ... Libraries were constructed following the instructions of the Illumina ChIP-seq Sample Prep Kit (Cat# IP-102-1001, Illumina, San Diego, CA, USA) and sequenced to generate 150-bp paired-end reads on the Illumina NovaSeq-6000 platform.
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bioRxiv - Immunology 2024Quote: ... Sequencing libraries were prepared using 2 × 300 bp paired-end kits (Illumina MiSeq Reagent Kit v3, 600-cycle, Illumina Inc., San Diego, CA). The raw sequencing data (fastq files ...
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bioRxiv - Genomics 2024Quote: ... Short read sequencing of the HMW gDNA was performed by the Australian Genome Research Facility (AGRF; Melbourne, Australia) with HiSeq HT chemistry and 125 bp paired-end (PE) sequencing (Illumina, San Diego, CA). Long-read sequencing of the HMW gDNA was carried out by the GrandOmics Biosciences Co. ...
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bioRxiv - Genomics 2024Quote: ... mRNA enrichment and preparation of barcoded cDNA libraries were done using the TruSeq RNA Sample Prep Kit (Illumina, Inc., San Diego, CA, USA). F ...
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bioRxiv - Biochemistry 2024Quote: ... Subsequent next-generation RNA sequencing was outsourced and conducted at Kyushu Pro Search LLP (Fukuoka, Japan) using Nextseq 500 (Illumina, San Diego, CA). Lead count data were analyzed using integrated Differential Expression & Pathway Analysis 2.01 (iDEP2.01 ...
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bioRxiv - Genomics 2024Quote: ... Illumina sequencing adapters and index barcodes were added to the amplicon target using the Nextera XT DNA Library Preparation Kit (Illumina Inc, CA, US), after which the libraries were pooled for sequencing ...
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bioRxiv - Cancer Biology 2024Quote: ... Libraries from both methods were normalized and pooled for sequencing on two NovaSeq SP-100 flow cells (Illumina, Inc., San Diego, CA, USA).
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bioRxiv - Genomics 2024Quote: RNA sequencing libraries were produced using the Illumina Truseq Stranded mRNA process and sequenced on an Illumina HiSeq 2500 (Illumina, San Diego, CA) by the Otago Genomics Facility ...
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bioRxiv - Bioengineering 2024Quote: ... all repositories with different indices were multiplexed and loaded on an Illumina NovaSeq instrument according to the manufacturer’s instructions (Illumina, San Diego, CA, USA). Raw sequencing data quality control and mapping were performed with a 10X genomics single-cell gene expression analysis pipeline ...
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bioRxiv - Developmental Biology 2024Quote: ... an equimolar amount of both the DNA libraries was pooled together and subject to cluster generation and sequencing into the Illumina NextSeq550 System (Illumina, San Diego, CA) in a paired-end dual index format with the following sequencing cycles ...
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bioRxiv - Developmental Biology 2024Quote: Total RNA samples were prepared for mRNA-Sequencing using the Illumina Stranded mRNA Ligation Sample Preparation kit following the manufacturer’s protocol (Illumina, San Diego, CA, USA). Libraries were validated for lengths ...
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bioRxiv - Cell Biology 2024Quote: ... and samples with an RNA Integrity Number (RIN) greater than 8.0 were used to generate RNA sequencing libraries using the Illumina® Stranded mRNA Prep (Illumina, San Diego, CA). Samples were processed following manufacturer’s instructions ...
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bioRxiv - Genetics 2024Quote: ... A library was prepared following the manufacturer’s instructions and was paired-end sequenced using a NovaSeq 6000 sequencing system (Illumina, San Diego, CA, USA) or DNBSEQ-T7 platform (MGI ...
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bioRxiv - Genomics 2024Quote: ... and sequenced across three lanes of a HiSeq or pooled for sequencing on a NovaSeq S1 using 2×75 (HiSeq) or 2×101 (NovaSeq) read lengths (Illumina, San Diego, CA). Variant calling and neoantigen prediction were performed as described previously (22,23).
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bioRxiv - Genetics 2024Quote: ... Sequencing was performed on an Illumina MiSeq instrument with v2 flow cell and a 300-cycle reagent kit (MS-102-2002; Illumina, San Diego, CA) with 2×150 paired-end reads to achieve the desired coverage ...
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bioRxiv - Developmental Biology 2024Quote: ... 500 ng of total RNA from each sample was used for the RNA-Seq library preparation using the TruSeq Stranded mRNA kit (Illumina, San Diego, CA) following the manufacturer’s instructions[7] ...
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bioRxiv - Plant Biology 2020Quote: ... The resultant cDNA libraries were subjected to 250 bp paired-end sequencing using an Illumina Hi-Seq 2500 platform (Illumina, San Diego, CA, USA).
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bioRxiv - Microbiology 2020Quote: ... Proteomics and Bioinformatics Laboratory at the University of Hawai‘i – Mānoa sequenced the libraries in two runs using separate 300-bp paired-end Illumina MiSeq v3 reagent kits (Illumina Inc., San Diego, CA, USA). Sequence data are available at the Sequence Read Archive as PRJNA543421.
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bioRxiv - Synthetic Biology 2021Quote: ... genomic library was prepared from four strains (B0, B1, B2 and B3) using the Nextera XT Library Preparation Kit (Illumina, San Diego, CA, USA), according to the manufacturer’s protocol ...
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bioRxiv - Cell Biology 2020Quote: ... Stranded mRNA-seq libraries were prepared at EMBL Genecore facility from 200ng of total RNA using the Illumina TruSeq RNA Sample Preparation v2 Kit (Illumina, San Diego, CA, USA) implemented on the liquid handling robot Beckman FXP2 ...
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bioRxiv - Cell Biology 2020Quote: ... RNAseq of cultured cells was conducted by the Weill Cornell Medical College Genomics Core using a NovaSeq 6000 system (Illumina, San Diego, CA, USA) with 50bp paired end reads ...
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bioRxiv - Evolutionary Biology 2020Quote: ... Libraries from herbarium samples were prepared with 22–157 ng of gDNA using Illumina TruSeq Nano DNA LT Sample Prep kit (Illumina, San Diego, CA, USA). They were sequenced at the GenoToul-GeT-PlaGE platform (Toulouse ...
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bioRxiv - Cell Biology 2020Quote: ... Single-end sequencing was performed on an Illumina HiSeq2000 instrument using the TruSeq SBS Kit HS-v3 (50-cycle) (Illumina, San Diego, CA, US).
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bioRxiv - Genetics 2020Quote: Blood samples of forty eight female GRF goats were collected and animals were genotyped with the Illumina GoatSNP50 BeadChip (Illumina Inc., San Diego, CA) containing 53,347 Single Nucleotide Polymorpishms (SNPs ...
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bioRxiv - Molecular Biology 2021Quote: ... The resulting Illumina sequencer-adapted sequencing libraries were sequenced using paired-end reads on the HiSeq X Ten platform (Illumina, San Diego, CA, USA).
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bioRxiv - Microbiology 2021Quote: ... Samples were pooled for RNAsequencing of 4 nM of total cDNA and sequencing was performed using a NextSeq 500 Instrument (Illumina Inc San Diego, CA).
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bioRxiv - Evolutionary Biology 2020Quote: ... Libraries were constructed using 1ng of input DNA in a Low Input, Transposase Enabled (LITE) pipeline developed at the Earlham Institute (Norwich, UK) and based on the Illumina Nextera kits (Illumina, San Diego, CA, USA) [48] ...
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bioRxiv - Evolutionary Biology 2021Quote: ... Genomic DNA was isolated from gill tissue with standard phenol-chloroform extraction and used to construct paired-end libraries with an insert size of ∼350 bp according to the manufacturer’s instructions (Illumina Inc., San Diego, CA, USA) for sequencing on the Illumina HiSeq X Ten Sequencer ...