Labshake search
Citations for Illumina :
3951 - 4000 of 4662 citations for Genz 644282 CAS 529488 28 6 99% since 2020
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Zoology 2023Quote: Each total genomic eDNA sample was used to library prep for high-throughput sequencing using a MiSeq platform (Illumina, San Diego, CA, USA). The primers set ...
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bioRxiv - Developmental Biology 2023Quote: ... libraries were prepared using the Illumina stranded mRNA Kit and 100bp paired-ends reads were sequenced to an average depth pf 40 million reads/replicate on the NovaSeq 6000 (Illumina, San Diego, CA).
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bioRxiv - Cell Biology 2023Quote: ... Six hundred pg of pre-amplified cDNAs were then used as input for Tn5 transposon tagmentation by the Nextera XT DNA Library Preparation Kit (96 samples) (Illumina, San Diego, CA) followed by 12 cycles of library amplification ...
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bioRxiv - Developmental Biology 2023Quote: ... pooled and sequenced on a single lane of an Illumina HiSeq 4000 instrument using a 2×100 paired-end sequencing protocol (Illumina, San Diego, CA) to validate quality and to adjust library pooling according to actual cell capture rates ...
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bioRxiv - Microbiology 2023Quote: ... 2 μl of the plasmid was used as a template and amplified using the Nextera DNA Indexes (Illumina Inc., San Diego, CA, USA) index primers ...
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bioRxiv - Genetics 2023Quote: ... Each pool was sequenced using standard paired-end (100bp) rapid run chemistry in a single lane on a HiSeq 2500 (Illumina, San Diego, CA). The final batch contained repeats from previous batches ...
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bioRxiv - Developmental Biology 2023Quote: ... We amplified cDNA using a modified mcSCRB-seq protocol and produced libraries using the Illumina DNA Prep kit (Illumina, Inc, San Diego, CA) (112 ...
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bioRxiv - Microbiology 2023Quote: ... The diluted library was combined with the subsequent PhiX control v3 (20%, v/v) and loaded onto a MiSeq v2 (500 cycles) reagent cartridge (Illumina, Carlsbad, CA, USA). The resulting sequences were uploaded to BaseSpace (Illumina ...
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bioRxiv - Plant Biology 2023Quote: ... A paired-end genomic libraries with an insert size of 470 bp was prepared using the Genomic DNA Sample Prep kit (Illumina, San Diego, CA) and sequenced on an Illumina NextSeq 1000 platform ...
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bioRxiv - Molecular Biology 2023Quote: Multiplex sequencing libraries were generated from 500 ng of total RNA (per library) using Illumina’s TruSeq sample prep kit and multiplexing sample preparation oligonucleotide kit (Illumina Inc., San Diego, CA) following the manufacturer’s instructions ...
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bioRxiv - Genomics 2023Quote: ... The resulting sequencing libraries were sequenced by the Institute for Integrative Genome Biology Core facility at the University of California at Riverside using the MiSeq instrument with 100 bp paired-end reads (Illumina, San Diego, CA).
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bioRxiv - Neuroscience 2022Quote: ... Libraries were sequenced at Canada’s Michael Smith Genome Sciences Centre (BC Cancer Research, Vancouver, BC, Canada) using the Illumina HiseqX (Illumina Inc., San Diego, CA). On average ...
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bioRxiv - Neuroscience 2022Quote: ... The input sample and enriched DNA samples obtained from the ChIP assays were used for library construction using the TruSeq ChIP Sample Prep Kit (Illumina; San Diego, CA) according to manufacturer’s instructions ...
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bioRxiv - Molecular Biology 2022Quote: ... RNA-Seq libraries were generated from 100 to 300 ng of RNA using TruSeq Stranded Total RNA Library Prep Gold kit and TruSeq RNA Single Indexes kits A and B (Illumina, San Diego, CA), according to manufacturer’s instructions ...
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bioRxiv - Molecular Biology 2022Quote: Amplified cDNA (0.25 ng) was used for preparing the sequencing library with the Nextera XT DNA Library Prep Kit (Illumina, San Francisco, CA, USA). Paired-end sequencing was performed on the MiSeq platform ...
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bioRxiv - Microbiology 2022Quote: ... greater than 8.0 were used to generate RNA sequencing libraries using the TruSeq Stranded mRNA Sample Prep Kit with TruSeq Unique Dual Indexes (Illumina, San Diego, CA). Samples were processed following manufacturer’s instructions ...
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bioRxiv - Microbiology 2022Quote: Purified ribodepleted RNA underwent library preparation using the Illumina TruSeq Stranded mRNA Sample Preparation kit following the manufacturer’s protocol modification for purified mRNA as input (Illumina, San Diego, CA, USA). Libraries were validated for length and adapter dimer removal using the Agilent TapeStation 4200 D1000 High Sensitivity assay (Agilent Technologies ...
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bioRxiv - Genomics 2022Quote: Illumina RNAseq libraries were prepared for both Porites lobata and Pocillopora meandrina using the TruSeq Stranded mRNA kit (Illumina, San Diego, CA, USA), according to the manufacturer’s protocol starting with 500 ng total RNA ...
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bioRxiv - Plant Biology 2022Quote: ... Hi-C libraries were sequenced on a S4 flowcell in paired end mode generating 151 nt reads on an Illumina NovaSeq 6000 (Illumina, San Diego, CA). Contigs less than 10 kb were removed from the assembly using seqtk (v1.3;https://github.com/lh3/seqtk) ...
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bioRxiv - Plant Biology 2022Quote: ... 100 ng of this genomic DNA was subsequently used to prepare Bisulfite libraries with the TruSeq Nano kit (Illumina, San Diego, CA, USA) according to the manufacturer’s instructions ...
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bioRxiv - Neuroscience 2022Quote: ... after which the pooled library was sequenced on a MiSeq system using a 600-cycle MiSeq Reagent Kit v3 as per manufacturer’s instructions (Illumina, San Diego, CA, USA). Post-processing of the data resulting from the MiSeq sequencing was conducted using QIIME 2 (Bolyen et al. ...
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bioRxiv - Evolutionary Biology 2024Quote: The transcriptome was sequenced using Illumina HiSeq 2000 2x150bp platform from cDNA libraries prepared using TruSeq RNA sample prep kit v2 (Illumina, San Diego, CA) at Macrogen Inc ...
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bioRxiv - Bioengineering 2024Quote: ... then the target exon was extracted with B2M exon primers with attached Nextera XT DNA Library Preparation Kit (Illumina, San Diego, Ca, USA) index adapter sequences ...
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bioRxiv - Microbiology 2024Quote: ... The V4 – V5 region of the 16S rRNA gene was amplified with the 515F/926R primer pair (45,46) and sequenced on the MiSeq platform (Illumina, Inc., San Diego, CA).
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bioRxiv - Neuroscience 2024Quote: ... RNA-Seq libraries were generated from 200 ng of total RNA using TruSeq Stranded mRNA Library Prep Kit and TruSeq RNA Single Indexes kits A and B (Illumina, San Diego, CA), according to the manufacturer’s instructions ...
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bioRxiv - Microbiology 2024Quote: ... regions ITS1-ITS2 were constructed using a dual-indexing method and sequenced on a MiSeq platform with a 2x300 bp run format (Illumina, San Diego, CA) at the University of Wisconsin – Madison Biotechnology Center ...
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bioRxiv - Neuroscience 2024Quote: ... Individually barcoded libraries were pooled and sequenced on a NextSeq mid-output paired-end sequencing run at 2×75 using NextSeq 500/550 Mid-Output v2.5 kit (Illumina, San Diego, CA, USA) according to the manufacturer’s instructions ...
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bioRxiv - Pharmacology and Toxicology 2024Quote: ... we used the standard Illumina TruSeq protocol (TruSeq Stranded mRNA LP, Cat # 20020594 and TruSeq RNA Sg Idx SetB, Cat # 20020493, Illumina, San Diego, CA)) following the manufacturers recommendations and as was done previously 31 ...
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bioRxiv - Pathology 2024Quote: ... Library preparation and sequencing was performed by the Genomics and Computational Biology Core (NIDCR, NIH) using an Illumina HiSeq 2500 (Illumina, San Diego, CA) configured for 37 paired-end reads (human ...
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bioRxiv - Neuroscience 2024Quote: Approximately 500 ng of total RNA was used for cDNA library preparation with oligo-dT primers following the Illumina TruSeq preparation guide (Illumina, San Diego, CA) (Mecklenburg et al. ...
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bioRxiv - Immunology 2024Quote: ... Texas A&M Institute for Genome Sciences and Society (College Station, TX, USA) constructed sequencing libraries for each sample using a standard protocol (Illumina, San Diego, CA). RNA-Seq library quality was assessed with the Cutadapt package and mapped to the equine genome using the HISTAT2 package ...
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bioRxiv - Microbiology 2024Quote: ... Sequencing libraries were prepared as described by the Earth Microbiome Project [53] and sequenced on an Illumina MiSeq Sequencer (Illumina, San Diego, CA).
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bioRxiv - Evolutionary Biology 2024Quote: ... Samples were 2 × 150 bp paired-end sequenced on one lane each of a HiSeq X Ten instrument (Illumina, Inc., San Diego, CA). Samples for Luke and Nababiep were prepared by HudsonAlpha Institute for Biotechnology (Huntsville ...
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bioRxiv - Immunology 2024Quote: ... TRB sequencing was performed on pools of libraries from 11 - 15 tumor or skin samples on the Illumina MiSeq platform using a v3 150-cycle kit (Illumina, San Diego, CA) in the FHCC Genomics Core Facility (Seattle ...
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bioRxiv - Immunology 2024Quote: ... Sequencing of the PCR amplicons spanning the MHC loci was performed on the Illumina MiSeq platform using a v2 500-cycle kit (Illumina, San Diego, CA) in the FHCC Genomics Core Facility or the UCI-Fred Hutch Cancer Centre Laboratory.
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bioRxiv - Microbiology 2024Quote: Total RNA of 5 μg was used to construct strand-specific RNA-sequencing libraries using the TruSeq RNA sample preparation Kit from Illumina (San Diego, CA). Briefly ...
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bioRxiv - Genomics 2024Quote: Methylation analysis was conducted using the Illumina Infinium chemistry.43 DNAm levels across ∼850,000 CpG sites were measured using the Infinium Methylation EPIC BeadChip (Illumina, Inc.; San Diego, CA). Beta values for CpG sites across the genome were measured according to kit protocols and filtered to remove polymorphic positions ...
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bioRxiv - Evolutionary Biology 2023Quote: ... according to the manufacturer’s instructions and stored in 10 mM Tris buffer at pH 8 and -80 ⁰C until paired-end reads of 2 x 150 bp were sequenced on a NextSeq 500/550 (Illumina, San Diego, CA) at the University of Bristol Genomics Facility ...
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bioRxiv - Developmental Biology 2024Quote: ... >7 passed quality control and were used for library preparation with the Illumina Stranded mRNA Library Prep Kit according to manufacturer’s instructions (Cat #20040532, Illumina Inc., San Diego, CA). This procedure includes mRNA purification and fragmentation ...
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bioRxiv - Microbiology 2024Quote: DNA samples were sequenced at the Center for Quantitative Life Sciences at Oregon State University (Corvallis, OR) on an Illumina HiSeq platform using a Nextera XT library preparation kit (Illumina, San Diego, CA). Primer and adaptor removal and read-trimming were performed with fastP using default settings for Nextera adapters (35) ...
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bioRxiv - Microbiology 2024Quote: We whole-genome sequenced each sample with Illumina technology (MiSeq and HiSeq 2500) using Nextera XT library preparation kits as instructed by the manufacturer (Illumina, San Diego, CA). Fastq files (raw sequencing data ...
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bioRxiv - Molecular Biology 2024Quote: ... Paired-end sequencing was carried out on an Illumina MiniSeq system according to the manufacturer’s instructions using a 300-cycle Mid or 300-cycle High kit (Illumina, San Diego, CA, USA), depending on the number of samples in each pool ...
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bioRxiv - Microbiology 2023Quote: ... We prepared DNA libraries employing the Nextera XT library preparation kit and the Nextera XT v2 index kit (Illumina, San Diego, CA, USA). The library was sequenced on a HiSeq4000 (Illumina ...
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bioRxiv - Synthetic Biology 2023Quote: ... Sequencing was performed on an Illumina MiSeq instrument using the 300-cycle MiSeq Reagent Kit v2 (Illumina, San Diego, CA, USA, MS102-2002).
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bioRxiv - Developmental Biology 2023Quote: ... Total RNA-Seq libraries were generated from 150-300 ng of total RNA using TruSeq Stranded Total RNA LT Sample Prep Kit with Ribo-Zero Gold (Illumina, San Diego, CA), according to manufacturer’s instructions ...
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bioRxiv - Developmental Biology 2023Quote: ... All the libraries were sequenced in a PE150 mode (Pair-End for 150bp read) in the X Ten instrument (Illumina, San Diego, CA).
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bioRxiv - Evolutionary Biology 2023Quote: ... and were then sent to the Swedish National Genomics Infrastructure’s SNP & SEQ platform in Uppsala for Illumina HiSeq 2500 sequencing (8 lanes; 126 bp Paired-End sequencing; Illumina, San Diego, CA, USA).
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bioRxiv - Microbiology 2023Quote: ... The pooled library (600 μL at 20 picomolar) was denatured and sequenced on an Illumina MiSeq sequencer (Illumina Inc., San Diego, CA, US).
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bioRxiv - Genomics 2023Quote: ... The libraries were sequenced at a target depth of 20,000 paired-end 150 bp reads per sample using a MiSeq machine (Illumina, San Diego, CA, USA). Reads were filtered by length <150 bp and using a maximum expected error threshold of 1.0 ...
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bioRxiv - Evolutionary Biology 2023Quote: We sequenced the targeted Y-chromosome regions in 5,020 samples using the YHseqY3000 panel on the Illumina platform (Illumina, San Diego, CA, USA) and used the BWA v.0.7.13 (Li and Durbin 2009 ...