Labshake search
Citations for Illumina :
3901 - 3950 of 4662 citations for Genz 644282 CAS 529488 28 6 99% since 2020
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Neuroscience 2020Quote: ... Samples in each experiment were multiplexed into a single pool in order to avoid batch effects and 69 bp-paired-end sequencing was performed using an Illumina HiSeq 4000 sequencer (Illumina, San Diego, CA). A yield between 30 and 90 million reads was obtained per sample.
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bioRxiv - Evolutionary Biology 2021Quote: ... Sequencing libraries were prepared from 1.3 μg total RNA using the Illumina TruSeq mRNA Stranded Library Kit (Illumina, Inc., San Diego, CA, USA) according to the manufacturer’s protocol with standard Illumina adapters and primers ...
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bioRxiv - Molecular Biology 2021Quote: ... The clustering of the index-coded samples was performed on a cBot Cluster Generation System using PE Cluster Kit cBot-HS (Illumina, San Diego, CA) according to the manufacturer’s instructions ...
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bioRxiv - Genomics 2020Quote: ... Paired-end sequencing was performed on the Illumina NextSeq 500 platform using NextSeq 500/550 High Output kit (Illumina, San Diego, CA, USA).
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bioRxiv - Cell Biology 2020Quote: Infinium Methylation EPIC Bead Chip assay genome-wide DNA methylation profiles of HLFs were generated using Illumina’s Infinium Methylation EPIC Bead Chip assay (EPIC Array) (Illumina, San Diego, CA, USA) at the Genomics and Proteomics Core Facility at DKFZ (Heidelberg ...
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bioRxiv - Genomics 2020Quote: The DNA samples were genotyped with various low-density assays and were imputed to the combination of Illumina BovineHD (Illumina, San Diego, CA) and the GeneSeek Genomic Profiler F250 (GeneSeek ...
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bioRxiv - Genomics 2020Quote: ... The samples were sequenced on the NextSeq 550 platform using paired-end 2×75 bp Reagent Kit from Illumina (San Diego, CA, USA).
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bioRxiv - Genetics 2020Quote: ... Total RNA were used as templates for cDNA libraries and were prepared as poly-A selected libraries using the Truseq stranded mRNA protocol (Illumina, San Diego, CA) and then sequenced on the Illumina Novaseq platform at AGCT Core (Los Angeles ...
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bioRxiv - Genomics 2021Quote: ... A library with 350 bp insert size was constructed from NMW gDNA using the standard protocol provided by Illumina (San Diego, CA, USA). Paired-end sequencing was employed using the Illumina NovaSeq platform with a read length of 2 × 150 bp ...
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bioRxiv - Genomics 2020Quote: We generated unstranded RNA-seq libraries using the Illumina TruSeq Total RNA kit according to the manufacturer’s instructions using the total mRNA collected from all 12 individuals (Illumina, San Diego, CA, USA). We sequenced RNA-seq libraries at the University of Chicago Genomics Core facility using the single-end 50 bp protocol on one lane of the Illumina HiSeq 4000 machine ...
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bioRxiv - Cancer Biology 2021Quote: ... Libraries were prepared by the Fred Hutch Genomics Center using the TruSeq RNA Samples Prep Kit v2 (Illumina Inc., San Diego CA, USA). Sequencing was performed on a Illumina HiSeq 2500 with 50 bp paired-end reads (PE50) ...
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bioRxiv - Microbiology 2021Quote: ... Paired-end (2 × 250 bp) sequencing was performed using MiSeq Reagent Nano kit v2 (500 cycles) on an Illumina MiSeq (Illumina Inc., CA, USA). DNA extraction controls and PCR no template controls were carried through library preparation and sequencing.
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bioRxiv - Evolutionary Biology 2020Quote: ... Two micrograms of MDA-amplified DNA were used to generate genome libraries using a TruSeq DNA PCR-Free Kit following the manufacturer’s protocol (Illumina, San Diego, CA, USA). The resulting libraries were sequenced using a Rapid-Run on an Illumina HiSeq 2500 to obtain 100 bp paired-end reads ...
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bioRxiv - Microbiology 2020Quote: ... the V3–V4 region of bacterial 16S rRNA genes was sequenced using primers 341F-806R [25] with MiSeq technology (Illumina, San Diego, CA). Internal company standards worked as expected (Supplementary Methods) ...
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bioRxiv - Microbiology 2020Quote: ... Samples were sequenced using the MiSeq 2×250 bp and HiSeq 2×150 bp paired-end read technology (Illumina, San Diego, CA, USA) as previously described [78] ...
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bioRxiv - Microbiology 2020Quote: ... The diatom DNA library was prepared with 200 ng of starting material using the TruSeq DNA Nano kit (Illumina, San Diego, CA, USA).
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bioRxiv - Immunology 2021Quote: SNP-array copy number profiling and analysis of regions of homozygosity were performed on DNA isolated from WT and CRISPR-Cas9 edited LCLs (ERAP2-KO) according to standard procedures using the Infinium Human CytoSNP-850K v1.2 BeadChip (Illumina, San Diego, CA, USA). Samples were scanned using the iScan system (Illumina) ...
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bioRxiv - Microbiology 2021Quote: ... Libraries were paired-end sequenced with an Illumina Next Seq 550 System using the NextSeq 500/550 High Output Kit v2.5 (300 Cycles) (Illumina, San Diego, CA, USA).
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bioRxiv - Immunology 2020Quote: ... We then prepared sequencing libraries as described by the Earth Microbiome Project and sequenced them using the Illumina MiSeq Sequencer (Illumina, San Diego, CA). 515F-806R primers were used to sequence the V3-V4 region of the 16s SSU rRNA as previously described 49 ...
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bioRxiv - Immunology 2020Quote: ... Libraries were submitted to the Heflin Center for Genomic Sciences at the University of Alabama at Birmingham where DNA quantification was made by qPCR and sequenced on an Illumina MiSeq system (Illumina, Inc., CA, USA) using 2 × 300 bp paired-end kits (Illumina MiSeq Reagent Kit v3) ...
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bioRxiv - Cell Biology 2021Quote: ... Single-indexed and multiplexed samples were run on an Illumina Next Seq 500 sequencer using a NextSeq 500 v2 kit (FC-404-2005; Illumina, Can Diago, CA) for paired-end sequencing.
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bioRxiv - Genomics 2021Quote: ... 34,35 Both PREG and GAPPS microarray experiments were separately performed at HudsonAlpha Institute for Biotechnology according to the manufacturer’s protocol (Illumina, San Diego, CA, USA). For both cohorts ...
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bioRxiv - Genomics 2021Quote: ... Subject recruitment and study procedures for EVA-PR have been described elsewhere.31 Genome-wide DNA methylation was measured in 488 nasal epithelial samples using the Infinium HumanMethylation450 BeadChip arrays (Illumina, San Diego, CA). The preprocessing and quality control (QC ...
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bioRxiv - Genomics 2021Quote: ... Paired-end sequencing (2×75 bases) using MiSeq reaget v2 kit was carried out on Illumina MiSeq (Illumina Inc., San Diego, CA, USA).
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bioRxiv - Genomics 2021Quote: ... scRNA-seq libraries were prepared according to the Smart-seq2 protocol and sequenced using the NextSeq 500 Sequencing System (Illumina, San Diego, CA) by the University of Illinois at Chicago Sequencing Core ...
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bioRxiv - Genomics 2020Quote: ... All the 14 libraries were subjected to paired-end sequencing on the HiSeq 2000 platform following the manufacturer’s instructions (Illumina, San Diego, CA, USA), using PE100 or PE150 chemistry for the short-insert libraries and PE49 for the mate-paired libraries [26] (Table 1).
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bioRxiv - Genomics 2021Quote: Linked short-read data were generated by sequencing of 10X Genomics (Pleasanton, CA, USA) Chromium libraries at Corteva Agriscience on the HiSeq 2500 platform (Illumina, San Diego, California). The Tx2783 Chromium dataset had 76× coverage and mean molecule length of 62,942bp ...
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bioRxiv - Microbiology 2021Quote: ... Two micrograms of MDA-amplified DNA were used to generate genome libraries using a TruSeq DNA PCR-Free Kit following the manufacturer’s protocol (Illumina, San Diego, CA, USA). The resulting libraries were sequenced using a Rapid-Run on an Illumina HiSeq 2500 to obtain 100 bp paired-end reads ...
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bioRxiv - Genetics 2020Quote: ... sequencer-ready fragments were size selected (∼200-500 bp) and the RAD-seq libraries sequenced on a Genome Analyzer II (Illumina, San Diego, CA), paired-end 2 x 100 bp mode ...
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bioRxiv - Neuroscience 2021Quote: ... The 3’ gene expression libraries and HTO sequencing libraries were pooled and sequenced at an approximate depth of 50,000 reads per cell for the 3’ gene expression libraries and 5,000 reads for HTO libraries using the NovaSeq S1 (Illumina, San Diego, CA, USA) flow cells.
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bioRxiv - Immunology 2021Quote: ... The libraries were loaded onto a flow cell and subjected to paired-end sequencing on a HiSeq 2000 system (Illumina, San Diego, CA).
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bioRxiv - Evolutionary Biology 2021Quote: ... The library pool was adjusted at a concentration of 10nM and sequenced on two lanes of an Illumina HiSeq 2500 (Illumina, San Diego, CA) using 100-bp single-end chemistry ...
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bioRxiv - Immunology 2022Quote: ... at endpoints A and B (total 18 samples) was used to construct cDNA libraries with the TruSeq Stranded mRNA kit (Illumina, San Diego, CA) and the indexed fragments were sequenced on the NGS NextSeq 500 (Illumina ...
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bioRxiv - Cancer Biology 2022Quote: ... Paired-end DNA sequencing with 150bp read length was performed at the SNP&SEQ Technology Platform in Uppsala (Uppsala University, Uppsala, Sweden) using an Illumina HiSeqX sequencer (Illumina, San Diego, CA) with v2.5 sequencing chemistry.
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bioRxiv - Microbiology 2022Quote: The gut mycobiome composition was determined using Illumina MiSeq amplicon-based sequencing of ITS2 gene regions with adapters compatible for the Nextera Index Kit® (Illumina, CA, USA). For the library preparation ...
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bioRxiv - Biochemistry 2022Quote: ... SITE-Seq assay library preparation and sequencing was performed as described previously and the final library was loaded onto the Illumina NextSeq platform (Illumina, San Diego, CA), and ~1-3 M reads were obtained for each sample.
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bioRxiv - Cell Biology 2022Quote: ... Libraries were sequenced on an Illumina NextSeq 500/550 system using NextSeq 500/550 High Output Kit v2.5 (75-cycles, Illumina, San Diego, CA, USA).
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bioRxiv - Molecular Biology 2022Quote: Small RNA-Seq libraries were generated from 1000 ng of total RNA using TruSeq Small RNA Library Prep Kit (Illumina, San Diego, CA), according to manufacturer’s instructions ...
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bioRxiv - Neuroscience 2022Quote: ... at the HIHG or The American Genome Center at Uniformed Services University of the Health Sciences (USUHS) using the TruSeq DNA PCR-Free library preparation kit and sequencing on the Novaseq 6000 (Illumina, San Diego, CA). WGS was analyzed through a bioinformatics pipeline including alignment to the GRCh38 genome build with BWA mem ...
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bioRxiv - Cancer Biology 2022Quote: ... The targeted amplicon libraries were spiked into the remainder of the gene expression and immunophenotyping libraries to be sequenced together on a NovaSeq (Illumina, San Diego, CA). The cycle settings were as follows ...
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bioRxiv - Cancer Biology 2022Quote: Total RNA isolated from BM was processed using the TruSeq RNA Sample Preparation v2 kit (low-throughput protocol; Illumina, San Diego, CA, USA) to prepare the barcoded libraries ...
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bioRxiv - Cancer Biology 2022Quote: ... and high-throughput sequencing was performed at Shanghai Jiao Tong University School of Medicine (Shanghai, China) using the HiSeq 4000 (Illumina, San Diego, CA).
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bioRxiv - Cancer Biology 2022Quote: ... RNA-seq libraries were generated from 500 ng of total RNA using the TruSeq Stranded mRNA Library Prep Kit and TruSeq RNA Single Indexes kits A and B (Illumina, San Diego, CA), according to the manufacturer’s instructions ...
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bioRxiv - Genomics 2022Quote: ... 3 μg of total RNA from each sample was converted into cDNA using the TruSeq Stranded mRNA LT Sample Prep Kit (Catalog No. RS-122-2101, Illumina, San Diego, CA) to construct cDNA libraries ...
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bioRxiv - Genomics 2022Quote: ... according to the manufacturer’s protocol and sequenced using 50bp paired end sequencing mode on Illumina Novaseq 6000 platform (Illumina, San Diego, CA, USA). To perform counts of transcripts from paired-end reads we used Salmon (62 ...
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bioRxiv - Genetics 2022Quote: ... Single-end 150-bp sequencing to a depth of 2.5 million reads per sample was performed on an Illumina NovaSeq machine (Illumina, San Diego, CA, USA). Raw data were deposited in the National Center for Biotechnology Information Short Read Archive (NCBI SRA ...
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bioRxiv - Genomics 2022Quote: ... WG and Small RNA libraries were prepared using the Nextera DNA Library Preparation Kit for paired end reads (Illumina, San Diego CA, USA) and the NEBNext Small RNA Library Prep Set (New England Biolabs ...
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bioRxiv - Genetics 2022Quote: ... Total RNA-Seq libraries were generated from a minimum of 150-300 ng of total RNA using TruSeq Stranded Total RNA LT Sample Prep Kit with Ribo-Zero Gold (Illumina, San Diego, CA), according to the manufacturer’s instructions ...
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bioRxiv - Immunology 2022Quote: ... Multiplexed samples were then sequenced at the Molecular Biology Core Facility (Dana-Farber Cancer Institute) and/or The Genomics Platform (Broad Institute) using an Illumina NextSeq 500 (Illumina, San Diego, CA), allowing 4×108 individual reads per multiplexed sample.
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bioRxiv - Genomics 2022Quote: ... Libraries were created from DNA of the same HzStark_Cry1AcR male using the TruSeq DNA PCR-Free Low Throughput Library Prep Kit with TruSeq DNA UD Indexes (Illumina, San Diego, CA, USA) to yield a standard paired end library with a 350±50 bp insert size ...