Labshake search
Citations for Illumina :
4301 - 4350 of 4662 citations for Genz 644282 CAS 529488 28 6 99% since 2020
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Immunology 2020Quote: ... was adjusted to 1 μg and used for poly (A) mRNA enrichment and stranded specific RNA-Seq library preparation with TruSeq Stranded mRNA kit (Illumina, San Diego, CA, USA). Quality control of prepared libraries were performed using Agilent Bioanalyzer DNA 1000 kit and Qubit DNA HS fluorescence kit ...
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bioRxiv - Microbiology 2020Quote: ... Five DNA extractions were performed per soil sample and pooled for metagenomic library preparation with the TrueSeq DNA kit (Illumina Inc., San Diego, CA). Sequencing was performed on the Illumina HiSeq platform to generate 6.4 billion of paired-end reads of 150bp.
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bioRxiv - Microbiology 2020Quote: ... amplicons were sent to NovogeneAIT (Singapore, Singapore) for multiplexing and sequencing on a NovaSeq 6000 sequencer using PE250 chemistry (Illumina, San Diego, CA, USA).
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bioRxiv - Bioengineering 2020Quote: To adjust the host-to-microbe ratio in the “synthetic template panel” and “cycle number test” prior to sequencing on a HiSeq3000 instrument (Illumina, San Diego, CA, USA), four reference samples were first made by rebarcoding the original pooled library (Supplementary Figures 9 and 10) ...
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bioRxiv - Microbiology 2020Quote: The bacterial compositions of distal ileal mucosa and gut luminal content were determined by 16S rRNA gene (V3-region) amplicon sequencing on a NextSeq using PE150 (Illumina, San Diego, CA, USA). Total DNA was extracted using Bead-Beat Micro AX Gravity Kit (A&A Biotechnology ...
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bioRxiv - Immunology 2021Quote: ... The V(D)J enriched library was then constructed via Chromium Single Cell 5’ Library Construction Kit (10x Genomics Cat#1000020) and libraries were sequenced in a NovaSeq™ 6000 Sequencing System (Illumina, San Diego, CA). V(D)J sequences were collapsed using Cell Ranger ...
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bioRxiv - Microbiology 2021Quote: Paired-end RNA sequencing (RNA-seq) was performed by the I2BC platform (UMR9198, CNRS, Gif-sur-Yvette) on a NextSeq instrument (Illumina, San Diego, CA, USA) using the NextSeq 500/550 High Output Kit v2 (75 cycles ...
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bioRxiv - Molecular Biology 2020Quote: ... 13 pM library was loaded on the Illumina MiSeq® with 10% PhiX using a 2 × 300 bp V3 chemistry (Illumina Inc., CA, USA).
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bioRxiv - Microbiology 2021Quote: ... Sequencing was performed using multiplexed libraries on the Illumina HiSeq platform to produce paired end reads of 100 nucleotides in length (Illumina, San Diego, CA, USA). Quality control involved analysis of contamination with Kraken (version 1.1.1)(37) ...
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bioRxiv - Cancer Biology 2020Quote: ... Strand specific RNA-seq libraries were constructed using the Illumina TruSeq Stranded Total RNA Library preparation Gold kit (20020598, Illumina Inc., San Diego, CA) as per the instructions ...
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bioRxiv - Immunology 2021Quote: ... Library preparation was done using a NEBNext Ultra II Directional RNA Library Prep Kit for Illumina with poly-A selection (Illumina, San Diego, CA, USA) following the manufacturer’s instructions ...
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bioRxiv - Immunology 2021Quote: Library preparation for sequencing was performed using 200 ngs of total RNA input with the TrueSeq RNA Sample Prep Kit v2-Set B (RS-122-2002, Illumina Inc, San Diego, CA) producing a 275bp Fragment including Adapters in average size ...
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bioRxiv - Physiology 2020Quote: ... 200ng of RNA per sample were used as the input of TruSeq Stranded mRNA Library Prep kit to make barcoded libraries according to the manufacturer’s protocol (Illumina Inc., San Diego, CA, USA). The library concentration was determined by qPCR using the Library Quantification Kit Illumina Platforms (Kapa Biosystems ...
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bioRxiv - Genomics 2021Quote: ... and subsequently sequenced in paired-end mode with 150- bp read length on a NextSeq500 to obtain ∼40 mio reads (Illumina, San Diego, CA, USA).
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bioRxiv - Genomics 2021Quote: ... we had genomic DNA from the cell line HCT116 profiled (Princess Margaret Genomics Centre, Toronto, ON, Canada) using the Infinium MethylationEPIC BeadChip array (Illumina, San Diego, CA, USA). We prepared these samples as technical replicates of the HCT116 genomic DNA that we later spiked with 0.01 ng spike-in control ...
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bioRxiv - Genomics 2021Quote: ... We performed the cfMeDIP-seq experiment as previously described.2 Samples underwent sequencing (Princess Margaret Genomics Centre, Toronto, ON, Canada) on a NovaSeq 6000 (Illumina, San Diego, CA, USA), paired-end 2×100 bp ...
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bioRxiv - Genomics 2021Quote: ... Paired-end sequencing libraries were prepared using the TruSeq Nano DNA Library Prep kit following the manufacturer’s specifications (Illumina Inc., San Diego, CA, USA). Out of the 150 libraries ...
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bioRxiv - Genomics 2021Quote: DNA and RNA extracted from filtered water samples were diluted to a common concentration (1ng/ul) and sent for 16S rRNA amplicon sequencing on an Illumina MiSeq (Illumina, San Diego, CA, USA) according to Earth Microbiome protocols ...
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bioRxiv - Genomics 2021Quote: ... Paired-end sequencing (250 bp) was performed for each library on a MiSeq instrument using 500 cycles v2 chemistry cartridges (Illumina, San Diego, CA, USA).
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bioRxiv - Genomics 2021Quote: ... Paired-end libraries were constructed from the double stranded cDNA by using Illumina DNA Prep with Enrichment kit (Illumina Inc., San Diego, CA, USA) following the manufacturer’s protocol ...
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bioRxiv - Genomics 2020Quote: ... Paired-end sequencing libraries were constructed with an insert size of 500 bp using a TruSeq DNA PCR-Free kit (Illumina, San Diego, CA, USA) according to Illumina library preparation protocols ...
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bioRxiv - Genomics 2020Quote: ... and 8 to 11 kb were generated using the gel selection-based protocol of the Nextera mate pair kit (Illumina, San Diego, CA, USA) and a 0.6% agarose gel in accordance with the manufacturer’s instructions ...
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bioRxiv - Genomics 2020Quote: ... We spiked in 1% PhiX control (PhiX Control v3) in a 12 pM library and sequenced on an Illumina MiSeq platform (Illumina, San Diego, CA, USA) using a MiSeq Nano Reagent Kit v2 (500 cycles).
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bioRxiv - Genetics 2020Quote: ... The two resulting PCR products were mixed in equimolar amounts and each sample was barcoded according to the Nextera XT library preparation protocol (Illumina, San Diego, CA, USA). Sequencing was performed on the Illumina MiSeq platform (DNA Core Facility ...
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bioRxiv - Genetics 2020Quote: ... were submitted to GeneSeek (Neogene, Lincoln, NE, USA) for SNP genotyping on the Illumina Infinium Feline 63K iSelect DNA Array (Illumina, San Diego, CA, USA) [21] ...
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bioRxiv - Cancer Biology 2021Quote: ... sequencing libraries using total RNA generated from frozen tissues with a TruSeq mRNA Library Preparation Kit using poly-A-enriched RNA (Illumina, San Diego, CA, USA) and enriched with the human kinome DNA capture baits (Agilent Technologies ...
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bioRxiv - Microbiology 2020Quote: ... Illumina MiSeq sequencing was performed at the Genome Institute of Singapore according to the MiSeq reagent kit v2 (2 × 250 bp) preparation guide (Illumina, San Diego, CA, USA).
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bioRxiv - Bioengineering 2023Quote: ... The PCR products were subjected to sequencing library construction using the TruSeq® DNA PCR-Free Sample Preparation Kit (Illumina, San Diego, CA, USA). The libraries were loaded on a NovaSeq 6000 system (Illumina ...
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bioRxiv - Cancer Biology 2023Quote: ... total RNA and miRNA were extracted from frozen samples of the ICGC cohort and sequenced using Illumina Technologies (Illumina Inc., San Diego, CA, USA) HiSeq2000 for DNA and RNA samples (paired-end ...
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bioRxiv - Molecular Biology 2022Quote: ... normalised and pooled before 150 paired-end sequencing on an Illumina MiniSeq sequencing system with a Mid Output Kit (Illumina, San Diego, CA, USA).
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bioRxiv - Molecular Biology 2023Quote: ... The RNA sequencing library was generated from 300 ng total RNA using the TruSeq Stranded mRNA Library Prep kit (#20020595, Illumina, San Diego, CA, USA) with oligo-dT beads for capture of poly-A-mRNA according to manufacturer’s protocol ...
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bioRxiv - Microbiology 2023Quote: Whole-genome sequencing for strains AKK101 and 3336 was performed by the Virginia Commonwealth University Genomics Core using the MiSeq platform (Illumina, San Diego, CA, USA) after the construction of a paired-end sequencing library using the Illumina Nextera XT DNA sample preparation kit (Illumina ...
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bioRxiv - Microbiology 2023Quote: ... Genomic DNA libraries were prepared for whole genome sequencing using the Tagmentation-based library prep kit according to the manufacturer’s instructions (Illumina Inc, San Diego, CA, USA). Next ...
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bioRxiv - Microbiology 2023Quote: The influenza genome was amplified from RNA extracted from virus isolates using a multi-segment RT-PCR with universal primers (39, 40) and sequenced using Nextera DNA library preparation and MiSeq (PE300) sequencer (Illumina, San Diego, CA, USA), as previously described (13) ...
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bioRxiv - Microbiology 2023Quote: ... The libraries were prepared using Nextera XT DNA Sample Preparation Kit and sequenced on MiSeq or NovaSeq 6000 platform (Illumina, San Diego, CA, USA). Raw reads were quality- and adaptor-trimmed using Trimmomatic v0.39 (Bolger at al. ...
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bioRxiv - Molecular Biology 2023Quote: ... rRNA subtraction was performed to deplete ribosomal RNAs from each sample using the Ribo-Zero rRNA Removal Kit (Gram-Negative Bacteria; Illumina, San Diego, CA, USA), and a TruSeq Kit mRNA Library Prep Kit (Illumina ...
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bioRxiv - Pharmacology and Toxicology 2023Quote: ... and those with a size of 200–400 base pairs were selected and sequenced using the NovaSeq 6000 system (Illumina Inc., San Diego, CA). Detected changes in gene expression levels were analyzed using the Kyoto Encyclopedia of Genes and Genomes (KEGG ...
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bioRxiv - Systems Biology 2022Quote: The sequencing library preparation was done using 200 ng of total RNA input with the TrueSeq RNA Sample Prep Kit v3-Set B (RS-122-2002, Illumina Inc, San Diego, CA) producing a 275 bp fragment including adapters in average size ...
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bioRxiv - Systems Biology 2022Quote: ... single reads and 7 bases index read on an Illumina HiSeq300 instrument using the TruSeq SBS Kit HS-v3 (50-cycle) (FC-401-3002, Illumina Inc, San Diego, CA).
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bioRxiv - Microbiology 2023Quote: ... Whole genome sequencing was performed at the Tianjing Sequencing Center (Novogene, Beijing, China) using the Illumina HiSeq system (Illumina Inc., San Diego, CA, USA). Reads were assembled with SOAPdenovo237 ...
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bioRxiv - Plant Biology 2023Quote: ... The ends of the cDNA libraries were sequenced for 60 cycles using a paired-end module on the Illumina NextSeq 500 platform (Illumina, San Diego, CA, USA). Two biological replicates were used in each experiment.
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bioRxiv - Cancer Biology 2023Quote: ... Paired-end DNA sequencing of the amplicons from all samples and both variables regions was completed in the same run on a MiSeq machine (M04141, Illumina, San Diego, CA, USA) using the 2x300 base pair chemistry (Reagent barcode ...
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bioRxiv - Genomics 2023Quote: ... The sequencing of the Hi-C libraries (∼300bp insert size) was carried out on an Illumina NovaSeq 6000 platform (Illumina, San Diego, CA, USA) in the 2×150bp mode by Genewiz (Suzhou ...
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bioRxiv - Genomics 2023Quote: ... RNA-seq with 50 bp reads was conducted at the University of Delaware on an Illumina genome sequencer (Illumina, Inc., San Diego, CA, USA). The data were viewed for initial quality through FastQC (v0.11.7) ...
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bioRxiv - Genomics 2023Quote: ... The cDNA library was constructed with 50 μg RNA from each sample using the VAHTS mRNA-seq v2 Library Prep Kit (Illumina, San Diego, CA, USA). The libraries were sequenced to generate 150 bp paired-end RNA-seq reads by Biomarker Technologies Corporation (Beijing ...
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bioRxiv - Genetics 2023Quote: ... and 1 μg of each pool was subsequently used to build distinct cDNA libraries with the TruSeq Stranded mRNA Library Prep (Illumina, San Diego, CA, USA) kit ...
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bioRxiv - Cancer Biology 2023Quote: ... Libraries were pooled and sequenced single-end (1X75) on an Illumina NextSeq 500 using the High output V2 kit (Illumina Inc., San Diego CA).
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bioRxiv - Biochemistry 2023Quote: ... The library was prepared for sequencing from 300 ng RNA of each sample using the Illumina Truseq standard total RNA library preparation kit (Illumina, San Diego, CA, USA). The quantity and quality of amplified libraries were evaluated using Qubit 4.0 and Agilent TapeStation high sensitivity D1000 Screen Tape ...
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bioRxiv - Microbiology 2023Quote: ... Samples were then sequenced in a 2 × 75 bp arrangement with a High Output Flow Cell on an Illumina NextSeq 550 system (Illumina, San Diego, CA, USA) at the LuxGen sequencing platform (Dudelange ...
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bioRxiv - Developmental Biology 2023Quote: ... The libraries for transcriptome analyses were prepared from 100 ng of total RNA using the TruSeq RNA Sample Preparation v2 kit (Illumina, San Diego, CA, USA) following the manufacturer’s protocols with minor modifications (Yatsu et al. ...