Labshake search
Citations for Illumina :
3851 - 3900 of 4662 citations for Genz 644282 CAS 529488 28 6 99% since 2020
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Microbiology 2022Quote: ... a sequencing library of the V3-V4 region of the 16S rRNA gene was constructed following the manufacturer’s instructions (Part # 15044223Rev.B; Illumina Inc., San Diego, CA, USA) with improvement as previously described [20] ...
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bioRxiv - Microbiology 2022Quote: ... A sequencing library of the V3-V4 region of the 16S rRNA gene was constructed following the manufacturer’s instructions (Part # 15044223Rev.B; Illumina Inc., San Diego, CA, USA) with improvement as previously described [20] ...
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bioRxiv - Synthetic Biology 2022Quote: ... These libraries with different indexes were multiplexed and loaded on an Illumina NovaSeq instrument according to manufacturer’s instructions (Illumina, San Diego, CA, USA). Sequencing was carried out using a 150 bp paired-end (PE ...
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bioRxiv - Neuroscience 2020Quote: ... Next generation sequencing and bioinformatics analysis was performed by the National Genomics Infrastructure (NGI) at the Science for Life Laboratory on the HiSeq 2500 System using the HiSeq Rapid SBS Kit v2 (Illumina, San Diego, CA) generating >13.5 M reads/sample ...
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bioRxiv - Genetics 2022Quote: ... Libraries were constructed using the Lexogen QuantSeq 3′ mRNA-Seq Library Kit FWD (Lexogen, Greenland, NH) and sequenced on an Illumina NextSeq 500 producing 85 nt single-end reads (Illumina, San Diego, CA) with each plate being split in half and each half being sequenced on a single lane to achieve desirable coverage.
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bioRxiv - Genomics 2022Quote: ... and the library pool was amplified via qPCR and loaded on one lane of a NovaSeq 6000 S4 flowcell (Illumina, San Diego, CA), where it was sequenced for 28 nt from one end and 151 nt from the other end ...
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bioRxiv - Immunology 2022Quote: ... The amplicons were quantified using KAPA Library Quantitation kit (KAPA, Cape Town, South Africa) and an equimolar amount of each sample was sequenced on the MiSeq System (Illumina, San Diego, CA) with 2×150 paired-end run parameters ...
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bioRxiv - Microbiology 2022Quote: ... Twenty percent of denatured PhiX was added to the amplicon pool (12 pM) and sequenced on the MiSeq platform using 300+300 bp paired-end V3 chemistry (Illumina, San Diego, CA). Raw sequence files were deposited to the NCBI Sequence Read Archive under the BioProject accession number ...
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bioRxiv - Evolutionary Biology 2022Quote: ... We sent 100 ng of DNA from 289 sapsuckers (Supplemental Materials Table 1) to Genome Quebec for sequencing on either an Illumina HiSeq4000 PE150 or the NovaSeqSP 6000 PE150 (Table S1) (Illumina, San Diego, CA).
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bioRxiv - Cancer Biology 2022Quote: ... The RNA-Seq library was generated following the standard Illumina RNA-Seq protocol and sequenced on an Illumina NovaSeq 6000 machine (Illumina, San Diego, CA) obtaining an average of 40 million of single-end reads per sample ...
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bioRxiv - Genetics 2022Quote: ... Individual barcoded libraries were randomly multiplexed into groups of four samples using equimolar quantities and sequenced on a MiSeq using a v3 600 reagent kit (Illumina, San Diego, CA) to generate paired-end 250 bp reads ...
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bioRxiv - Genetics 2022Quote: ... Output total RNA was depleted for ribosomal RNA and prepped for RNA-seq using the Scriptseq Complete Gold (Epidemiology) kit (Illumina, San Diego, CA). A total of ~50 ng of ribosomal depleted RNA was used as an input to transcriptome libraries ...
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bioRxiv - Genetics 2022Quote: ... Illumina compatible P5 P7 sequences were added during post capture amplification and libraries were submitted for 2 × 150bp paired-end next generation sequencing (Illumina, San Diego, CA), targeting 15 million clusters per sample ...
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bioRxiv - Evolutionary Biology 2022Quote: ... Two independent paired-end libraries were constructed per population from these DNA pools using the Genomic DNA Sample Preparation Kit (Illumina, San Diego, CA) (technical replicates) ...
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bioRxiv - Cancer Biology 2020Quote: ... RNA-Seq libraries preparation and sequencing was performed by the IGA Technology Services (Udine, Italy) using the Illumina TruSeq Stranded mRNA Kit (Illumina, San Diego, CA) according to manufacturer’s instructions ...
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bioRxiv - Cancer Biology 2020Quote: ... and one sample of each clonal population) were multiplexed into one pool and sequenced on Illumina HiSeq2000 instrument (Illumina Inc., San Diego, CA). Adapter sequence was trimmed using Trimmomatic-0.30 ...
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bioRxiv - Evolutionary Biology 2020Quote: ... RNA-seq libraries were generated using SENSE Total RNA-seq Library Prep Kit v2 (Lexogen, Vienna, Austria) following the manufacturer’s protocol and sequenced on NextSeq 500 (Illumina, San Diego, CA, USA) using single-end 75 bp chemistry.
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bioRxiv - Plant Biology 2020Quote: ... The cDNA libraries were prepared with an Illumina TruSeq Stranded Total RNA kit with Ribo-Zero Plant or the BrAD-Seq method37,38 and sequenced for 86 bp single end with an Illumina NextSeq 500 platform (Illumina, San Diego, CA, USA). Data preprocessing was performed as follows ...
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bioRxiv - Genetics 2020Quote: ... F2 mice carrying the Col4a1+/Δex41 mutation and genotyped at the UCSF Genomic Core Facility with a commercial single nucleotide polymorphism (SNP) panel (Illumina, San Diego, CA) which contains 646 informative SNPs for (CAST X B6 ...
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bioRxiv - Genomics 2020Quote: ... Libraries were indexed and pooled into 12 sample sets and sequenced as 101 bp paired-end reads using Illumina HiSeq2500 (Illumina, San Diego, CA). Raw data have been submitted to GEO (http://ncbi.nlm.nih.gov/geo ...
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bioRxiv - Zoology 2021Quote: ... carried out library preparation (with a Ribo-Zero for rRNA removal) and sequencing using a NovaSeq6000 and S4 Flowcells (Illumina, CA, United States). Sequencing of the 18 adults across 3 different treatments yielded a total of 1.24 billion reads with an average of 68 million reads per sample (SEM ...
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bioRxiv - Physiology 2021Quote: ... High-throughput genome sequencing was performed on a HiSeq 2500 (2 × 100 or 2 × 150 paired-end reads) or MiSeq (2 × 300 paired-end reads) sequencer (Illumina, San Diego, CA), following the manufacturer’s instructions ...
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bioRxiv - Plant Biology 2021Quote: AC and SlBES1-RNAi-8 fruits at breaker and red ripe stages were collected for total RNA extraction and Illumina MiSeq library was constructed as described by manufacturer’s instructions (Illumina, San Diego, CA, USA) and then sequenced with the Illumina Miseq platform.
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bioRxiv - Physiology 2020Quote: ... Library preparation was performed with 1μg total RNA using the TruSeq Stranded mRNA Library Prep Kit High Throughput (Cat# RS-122-2103, Illumina, San Diego, CA, USA). Libraries were quality-checked on the Fragment Analyzer (Advanced Analytical ...
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bioRxiv - Microbiology 2021Quote: Illumina libraries were prepared for paired-end 250-bp sequencing (2 × 250 bp) using the Nextera DNA Flex Library kit (Illumina, San Diego, CA). The libraries were sequenced at the UC Davis Genome Center (Davis ...
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bioRxiv - Zoology 2021Quote: ... The library was sequenced with 150 bp paired-end reads in one lane of an Illumina HiSeq X (Illumina, San Diego, CA, USA). The RAD-Seq data were analyzed using the Stacks program (version 2.52 ...
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bioRxiv - Microbiology 2020Quote: DNA libraries of virome DNA were prepared using the same methods as described for genome sequencing and were sequenced on an Illumina HiSeq 2500 sequencer with a HiSeq v4 SBS sequencing kit (Illumina, San Diego, CA) producing 2×160-bp paired-end reads ...
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bioRxiv - Microbiology 2020Quote: ... DNA libraries were pooled and sequenced on both the Illumina HiSeq5000 and HiSeq2500 and fastq files were generated from demultiplexed reads with bcl2fastq Conversion Software (Illumina, San Diego, CA). Reads were trimmed and assembled using the A5ud pipeline (74) ...
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bioRxiv - Microbiology 2020Quote: ... The pool was sequenced on an Illumina MiSeq using the 2 × 250 bp v2 kit with a 10% PhiX control following the manufacturer’s protocol (Illumina, Inc., San Diego, CA) and using custom primers developed from (55) ...
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bioRxiv - Microbiology 2021Quote: Metagenomic libraries (2×150 paired-end) were prepared and sequenced on an Illumina NextSeq 500 sequencing platform (Illumina Inc., San Diego, CA, USA). Quality of the reads and presence of adaptor sequences were checked using FastQC v.0.11.5 (Andrews ...
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bioRxiv - Genomics 2021Quote: RNA-Seq library preparation was carried out from 1 µg total RNA using the TruSeq Stranded mRNA kit (Illumina, San Diego, CA, USA), which allows mRNA strand orientation (sequence reads occur in the same orientation as anti-sense RNA) ...
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bioRxiv - Genomics 2021Quote: ... ~100X sequencing coverage with Illumina short reads was generated on Illumina MiSeq (2 × 300 bp mode) instrument in a high output mode (Illumina, San Diego, CA) to support PacBio read correction and assembly polishing as needed.
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bioRxiv - Genomics 2021Quote: The full-coding region of 48 CRC-related genes (Supplementary Table S1) was sequenced using a MiSeq platform (Illumina, San Diego, CA, USA) on a subset of 44 unpaired tumor samples ...
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bioRxiv - Neuroscience 2021Quote: ... 600 pg of pre-amplified cDNA were then used as input for Tn5 transposon tagmentation by the Nextera XT DNA Library Preparation Kit (96 samples) (Illumina, San Diego, CA) followed by 12 cycles of library amplification ...
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bioRxiv - Developmental Biology 2021Quote: ... Six hundred pg of pre-amplified cDNA were then used as input for Tn5 transposon tagmentation by the Nextera XT DNA Library Preparation Kit (96 samples) (Illumina, San Diego, CA) followed by 12 cycles of library amplification ...
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bioRxiv - Genetics 2020Quote: ... Non-stranded cDNA libraries were prepared with a TruSeq RNA sample preparation kit v2 and sequenced on a HiSeq 2000 (Illumina, San Diego, CA) using SBS v3-HS reagents for paired-end sequencing (2 x 100bp) ...
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bioRxiv - Genetics 2020Quote: ... 1987) was done by merging analysis results to the manifest file available for the Infinium HumanMethylation450 v1.2 BeadChip (Illumina, San Diego, CA, USA). Annotations included ‘Island’ ...
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bioRxiv - Evolutionary Biology 2020Quote: ... Sample-wise library preparation following manufacturer’s instructions for paired- end sequencing were carried out using the Illumina TrueSeq Nano Library kit (Illumina, San Diego, CA, USA). DNA pools were sequenced in two multiplexed batches of 6 samples (3 selected and 3 control population per batch ...
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bioRxiv - Genetics 2021Quote: ... was sequenced using 300 bp paired-end sequencing reads prepared with the MiSeq Reagent Kit v3 on an Illumina MiSeq sequencer (Illumina, San Diego, CA). To this end ...
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bioRxiv - Genomics 2021Quote: ... The transcriptomic library was prepared using Illumina TruSeq Stranded Total RNA library preparation kit with Ribo-Zero workflow and 150 bp paired-end reads were generated on Illumina Novaseq 6000 instrument (Illumina Inc., CA, USA). The detailed information related to species identification and DNA-RNA extraction is mentioned in Supplementary Notes 1.
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bioRxiv - Microbiology 2021Quote: ... Twenty percent of denatured PhiX was added to the amplicon pool (12 pM) and sequenced on the MiSeq platform (Illumina, San Diego, CA) at the Forsyth Institute (Cambridge ...
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bioRxiv - Immunology 2020Quote: ... An input of 1 ng of total RNA were prepared and indexed separately for sequencing using the CloneTech SMART ultra-low RNA input Prep Kit (Illumina, San Diego, CA) as per manufacturer’s instruction ...
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bioRxiv - Neuroscience 2020Quote: ... Libraries from 1000-4000 cells (depending on the sample) were sequenced in paired end mode on a HiSeq 4000 instrument (Illumina, San Diego, CA) at an average depth of 174,446 reads per cell (for V2/V3) ...
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bioRxiv - Plant Biology 2021Quote: ... RNA sequencing was made in a NovaSeq 6000 sequencer according to the manufacturer’s instructions for paired-end reads (Illumina, San Diego, CA, USA). The 24 samples were sequenced producing paired-end reads of 150 bp length ...
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bioRxiv - Cancer Biology 2021Quote: ... RNA-seq libraries were generated with 1 μg of RNA as input using the TruSeq RNA Sample Prep Kit (Illumina, San Diego, CA) with poly(A)-enrichment according to the TruSeq protocol ...
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bioRxiv - Molecular Biology 2021Quote: ... RNA-Seq library preparations were carried out from 500 ng total RNA using the TruSeq Stranded mRNA kit (Illumina, San Diego, CA, USA) which allows mRNA strand orientation (sequence reads occur in the same orientation as anti-sense RNA) ...
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bioRxiv - Cancer Biology 2021Quote: ... scRNA-libraries were sequenced on a NextSeq 500/550 High Output Flow Cell v2.5 (150 Cycles) on an Illumina NextSeq 550 (Illumina, San Diego, CA, USA). The bcl2fastq function and the cell ranger (v3.0 ...
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bioRxiv - Microbiology 2021Quote: Whole genome sequencing libraries were prepared using either Nextera™ XT or Nextera™ DNA Flex library preparation kits (Illumina, Inc., CA, USA) following the manufacturers protocol ...
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bioRxiv - Evolutionary Biology 2020Quote: ... Illumina short reads DNA libraries were generated from the pooled amplicons using Nextera XT DNA Sample Preparation Kit (Illumina, San Diego, CA, USA) according to the manufacturer specifications ...
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bioRxiv - Cell Biology 2020Quote: ... was used for reverse transcription and generation of double stranded cDNA for subsequent library preparation using the Nextera XT Library Preparation kit (Illumina, San Diego, CA). Reaction Buffer (1X ...