Labshake search
Citations for Illumina :
3201 - 3250 of 10000+ citations since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Genomics 2024Quote: ... libraries were prepared using the Illumina DNA Prep followed by Illumina NovaSeq 6000 sequencing with 150-bp paired-end technology to a target depth of 16x ...
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bioRxiv - Genomics 2024Quote: ... Libraries were multiplexed where appropriate and at least 35 million reads collected per condition by 80 bp single end sequencing using NextSeq 500 (Illumina) as [13].
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bioRxiv - Genomics 2024Quote: Applying K-mer-based techniques to Illumina short reads from Illumina sequencing libraries allowed us to estimate the genome’s size ...
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bioRxiv - Genomics 2024Quote: ... Gap-filled scaffolds were polished with HyPo (Kundu et al., 2019) by using mapped short (Illumina) and long reads (PacBio) ...
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bioRxiv - Genomics 2024Quote: ... montana RNAseq data (Illumina Truseq 150bp PE) [62] ...
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Chromosome-level assembly of Cucumis sativus cv. ‘Tokiwa’ as a reference genome of Japanese cucumberbioRxiv - Genomics 2024Quote: ... We also sequenced the RNA with Hiseq4000 (Illumina Inc., San Diego, USA) for gene annotation ...
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bioRxiv - Genomics 2024Quote: ... 16S rRNA gene reads were retrieved from Illumina (Short Read “SR”) and PacBio (Long Read “LR” ...
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bioRxiv - Genomics 2024Quote: ... and precision/recall/F1 were calculated with hap.py (v0.3.15) (https://github.com/Illumina/hap.py), stratifying by region with a bed file containing annotated exon coordinates based on their expression level quantified in transcripts per million (TPM).
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bioRxiv - Genomics 2024Quote: ... RNA extracted from these fruits was pooled to create a single sample for the construction of cDNA libraries using the TruSeq RNA Library Prep Kit v2 (Illumina, Inc., USA) (Illumina, Inc., USA). The Agilent 2100 Bioanalyzer (Agilent ...
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bioRxiv - Genomics 2024Quote: Sequencing data were downloaded from Basespace (Illumina) and pre-barcodes were demultiplexed using FASTX barcode splitter: cat | fastx_barcode_splitter.pl -- bcfile
--bol --prefix Pre-barcodes were removed with FASTX barcode trimmer: fastx_trimmer -f 6 -i -o -z Sequencing and barcode trimming steps were checked for quality using FASTQC [60]: fastqc -o -
bioRxiv - Genomics 2024Quote: ... Pooled PCR products were subjected to multiplex NGS using the NextSeq 500/550v2 Reagent Kit (Illumina). Sequenced reads were separated by barcode ...
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bioRxiv - Genomics 2024Quote: ... using poly-A selection of mRNA following the protocol outlined by Illumina in their user guide (https://support.illumina.com/sequencing/sequencing_kits/truseq-stranded-mrna.html ...
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bioRxiv - Genomics 2024Quote: ... The normalized RPKG value (number of reads recruited per kb of genome per Gb of metagenome) and coverage values (alignment of Illumina metagenomic reads in a subset of 40 million reads ...
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bioRxiv - Genomics 2024Quote: ... using the Global Screen Array GSA 3.0 from Illumina was used to genotype all samples ...
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bioRxiv - Genomics 2024Quote: ... mRNAseq libraries were built using the ‘TruSeq Stranded mRNA Library Prep’ kit (Illumina) following the protocol provided by the manufacturer ...
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bioRxiv - Genomics 2024Quote: ... Fastqs generated from Illumina sequencing was input to cellranger (v7.1.0 ...
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bioRxiv - Genomics 2024Quote: The genome sequencing data (PacBio, Illumina and HiC) of B ...
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bioRxiv - Genomics 2024Quote: ... Library concentration was estimated by Tapestation (DNA5000 screentape) and qPCR (KAPA Illumina library quantification kit).
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bioRxiv - Genomics 2024Quote: ... Sequencing libraries were demultiplexed with bcl2fastq (Illumina). The Space Ranger pipeline v2022.0705.1 (10x Genomics ...
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bioRxiv - Microbiology 2024Quote: ... for 16S rRNA gene and ITS3-GCATCGATGAAGAACGCAGC/ITS4-TCCTCCGCTTATTGATATGC (36) for the ITS2 fragment and sequenced on the Illumina Miseq platform (Illumina, Inc., USA).
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bioRxiv - Microbiology 2024Quote: ... Ribosomal RNA (rRNA) depletion was performed using the Ribo-Zero rRNA removal kit (bacteria, #MRZB12424, Illumina) with 5 μg of total RNA ...
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bioRxiv - Microbiology 2024Quote: ... with a paired-end approach (2×300bp) and V3 reagents (Illumina).
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bioRxiv - Genomics 2024Quote: ... Libraries were sequenced on a NovaSeq 6000 (Illumina), 150bp Paired-End reads ...
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bioRxiv - Genomics 2024Quote: ... paired end 2X150 kit (Illumina, San Diego, CA). The resulting raw sequence was only trimmed for adaptors ...
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bioRxiv - Microbiology 2024Quote: ... DK2 was sequenced by Baseclear (Leiden, the Netherlands) using a NovaSeq 6000 system (Illumina, San Diego, CA, USA). DK2 long reads were generated in house using a Nanopore GridION sequencer.
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bioRxiv - Microbiology 2024Quote: ... and sequenced on an Illumina platform (Illumina NovaSeq 6000) at Tsingke Biotech (Bejing ...
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bioRxiv - Microbiology 2024Quote: Ribosomal RNA was then removed using Ribo-Zero rRNA Removal Kit for gram-positive Bacteria (Illumina) according to the manufacturer’s instructions ...
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bioRxiv - Microbiology 2024Quote: ... Parallel aliquots of the DNA samples used for ONT sequencing were used to prepare Illumina libraries using the Nextera DNA Flex Library Prep Kit as per protocol (Illumina Inc., San Diego, CA, USA). Library quality was measured using an Agilent 4200 TapeStation System as described above ...
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bioRxiv - Microbiology 2024Quote: ... with 12.5 pM PhiX Control v3 (Illumina) added ...
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bioRxiv - Microbiology 2024Quote: ... Amplicon libraries were sequenced on an Illumina MiSeq (Illumina, Santiago, USA) at the Personalbio ...
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bioRxiv - Genomics 2024Quote: ... the genomic libraries were prepared with Nextera XT Kits (Illumina, USA) and DNA sequencing was performed using paired-end reads on a MiSeq ...
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bioRxiv - Genomics 2024Quote: ... NextSeq or HiSeq system (Illumina, USA).
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bioRxiv - Genomics 2024Quote: Paired-end sequencing was performed using an Illumina HiSeq3000 (Illumina, California, USA) system ...
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bioRxiv - Genomics 2024Quote: ... Samples were finally demultiplexed using bcl2fastq v2.20 Conversion Software (Illumina, San Diego, CA).
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bioRxiv - Genomics 2024Quote: ... Libraries were sequenced on a NovaSeq 6000 (Illumina, San Diego, CA) at SE75.
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bioRxiv - Microbiology 2024Quote: ... Ribo-Zero(TM) rRNA Removal Kit (Illumina, San Diego, CA, USA) and QIAseq FastSelect rRNA Removal Kit (Qiagen ...
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bioRxiv - Genomics 2024Quote: ... Genomic sequencing library was prepared from 1 ng of purified DNA using the Illumina Nextera XT library preparation kit (Illumina #FC-131-1096), following the manufacturer’s instructions or with a reduced volume of reagents to 20% ...
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bioRxiv - Genomics 2024Quote: ... and M29) and the W2017 Morex line using the 10X Genomics linked read library preparation followed by Illumina NovaSeq 6000 sequencing with 150-bp paired-end technology to a target depth of 40x ...
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bioRxiv - Genomics 2024Quote: ... Sequences for the 13 landraces were generated using the Illumina TruSeq DNA Nano Prep followed by Illumina NovaSeq 6000 sequencing with 150-bp paired-end technology to a target depth of 40x.
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bioRxiv - Genomics 2024Quote: ... Trimmomatic v0.39 [26] was used to trim adapters from Illumina RNA-seq reads with the flags ...
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bioRxiv - Microbiology 2024Quote: ... The NovaSeq Sequencing System (Illumina, San Diego, CA, USA) was used to generate 150 bp paired-end reads to obtain ∼35 million reads per sample ...
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bioRxiv - Microbiology 2024Quote: ... The libraries were clustered and sequenced (2 x 150 bp) on a NextSeq 550 Sequencing System (Illumina) using a NextSeq 500/550 Mid Output v2.5 kit (300 cycles ...
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bioRxiv - Genomics 2024Quote: ... with ∼30,000 add-on markers from Infinium PsychArray-24 focused content panel (Illumina, San Diego, CA). Briefly ...
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bioRxiv - Genomics 2024Quote: ... Methylation was measured from 160ng of bisulfite-converted DNA using the Illumina EPIC Beadchip (Illumina Inc, San Diego, CA, USA).
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bioRxiv - Genomics 2024Quote: ... nQuire Tool 92 in conjunction with statistics of variants from Illumina short reads were utilized (Supplementary Table 5).
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bioRxiv - Immunology 2024Quote: ... and sequenced using a NovaSeq 6000 platform (Illumina). Quality of raw sequencing data was assessed using FastQC (v 0.11.2 ...
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bioRxiv - Genetics 2024Quote: Pooled libraries were then diluted and run on the Illumina MiSeq Sequencing System (Illumina), according to Illumina guidelines ...
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bioRxiv - Immunology 2024Quote: ... cDNA was prepared using the TruSeq Stranded Total RNA Sample Preparation kit with Ribo Zero Gold (Rev. E; Illumina) according to manufacturer’s protocol ...
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bioRxiv - Immunology 2024Quote: ... Sequencing was performed at the Children’s Hospital of Philadelphia High-Throughput Sequencing Core using NextSeq 1000 (Illumina). Raw sequencing read counts were normalized and processed using R.
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bioRxiv - Immunology 2024Quote: ... Library prep was performed using stranded mRNA prep with poly-A enrichment (Illumina). Sequencing was performed at the Children’s Hospital of Philadelphia High-Throughput Sequencing Core using NextSeq 1000 (Illumina) ...