Labshake search
Citations for Illumina :
3351 - 3400 of 10000+ citations since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Microbiology 2024Quote: ... Genome sequencing was performed for all isolates using short-read technology (MiSeq platform; Illumina, San Diego, CA) generating 150 or 250 bp paired-end reads and >100-fold average coverage ...
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bioRxiv - Microbiology 2024Quote: ... and the Sequence Analysis Viewer (Illumina) program was used to evaluate the run’s quality.
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bioRxiv - Molecular Biology 2024Quote: ... and finally diluted to 1.5 pM before loading at a low cluster density (4 x 105 clusters / mm2) together with 50% of PhiX spike-in (Illumina). For libraries sequenced on NextSeq extra purification and removal of adapter dimers was performed using SPRIselect beads (Beckman Coulter ...
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bioRxiv - Microbiology 2024Quote: ... libraries were prepared using the Nextera XT Library Prep Kit (Illumina, San Diego, USA) following manufacturer’s instructions ...
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bioRxiv - Microbiology 2024Quote: ... and sequenced (2x150 bp) on a Miniseq system (Illumina).
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bioRxiv - Microbiology 2024Quote: ... and DNA libraries were prepared using Nextera XT DNA library preparation kit (Illumina, catalog# FC-131-1024). Paired end sequencing (2 × 150 bp ...
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bioRxiv - Microbiology 2024Quote: ... Pooled libraries were sequenced on a NovaSeq 6000 (Illumina). Demultiplexed Illumina reads were trimmed with Trimmomatic (v0.39 ...
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bioRxiv - Microbiology 2024Quote: ... and pooled in an equimolar manner prior to sequencing on a NovaSeq sequencer (Illumina) in 2 × 150 bp ...
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bioRxiv - Microbiology 2024Quote: ... quantified by quantitative PCR (KAPA Library Quantification Kit for Illumina platforms; KapaBiosystems) and pooled in an equimolar manner prior to sequencing on a NovaSeq sequencer (Illumina ...
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bioRxiv - Microbiology 2024Quote: ... Most bacterial and phage samples were sequenced using single or paired-end sequencing on the Illumina Nextseq platform (Illumina, Inc). ICP3 mutants were sequenced using Plasmidsaurus (Plasmidsauraus ...
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bioRxiv - Microbiology 2024Quote: DNA was extracted with a bead-beating + enzymatic lysis manual extraction method and sequencing libraries were prepared using ¼ volume reactions of the Illumina DNA Prep kit and Nextera Unique Dual Indexes (Illumina), as previously described (20) ...
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bioRxiv - Microbiology 2024Quote: ... and sequenced on either the Illumina MiSeq or NextSeq (Illumina, USA). Contigs were assembled using SPAdes Genome Assembler version 3.6.2 102 ...
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bioRxiv - Microbiology 2024Quote: ... Sequencing of the metagenomic DNA was performed at the Genomics Core at the University of Tennessee using the NovaSeq 6000 platform (NovaSeq 6000 SP reagent kit, Illumina, San Diego, CA) to generate metagenomic datasets with 2 ξ 250 bp read length (Table S2).
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bioRxiv - Microbiology 2024Quote: ... genomic DNA libraries were prepared using the Nextera XT Library Prep Kit (Illumina, USA) following the manufacturer’s protocol with the following modifications ...
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bioRxiv - Microbiology 2024Quote: ... following the manufacturer’s instructions and sequencing carried out on the Illumina NovaSeq™ 6000 (Illumina, USA). Transcript abundance was quantified using Salmon for each gene in all samples ...
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bioRxiv - Microbiology 2024Quote: ... 100 bp paired end sequencing was performed on Illumina NovaSeq 6000 platform using S4 flow cell (Illumina Inc., San Diego, CA, USA).
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bioRxiv - Microbiology 2024Quote: ... and 1ng of the cDNA was employed as a template for the construction of the sequencing library using the NexteraXT kit from (Illumina, Cambridge, UK). Subsequently ...
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bioRxiv - Microbiology 2024Quote: ... the sequencing libraries were processed on a MiSeq instrument (Illumina, Cambridge, UK), generating paired-end reads of 2×75 bases ...
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bioRxiv - Microbiology 2024Quote: ... using 2 x 100-bp paired-end reads and 2 x 12-bp index reads with a 300-cycle kit (Illumina, 20012860).
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bioRxiv - Microbiology 2024Quote: ... Libraries were sequenced on an Illumina NovaSeq 6000 (Illumina, San Diego, USA) using a 250 bp paired end protocol ...
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bioRxiv - Microbiology 2024Quote: ... The MiSeq Reagent Nano Kit v3 (600 cycles) (Illumina, MS-102-3003) was used to sequence the denatured library after it had been put onto the Illumina MiSeq instrument ...
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bioRxiv - Microbiology 2024Quote: ... and 500 ng of DNA was used with an Illumina DNA Prep kit (Illumina Inc.) to generate genome sequence libraries as described by the manufacturer ...
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bioRxiv - Microbiology 2024Quote: ... The libraries were then diluted to 11 pM and 1% denatured PhiX (Illumina Inc.) was added as described by the supplier ...
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bioRxiv - Microbiology 2024Quote: ... Metagenomic libraries were prepared and sequenced on a NovaSeq 6000 instrument with a S4 flow cell (300 cycles) (Illumina Inc, San Diego, CA, USA) as previously detailed (15) ...
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bioRxiv - Microbiology 2024Quote: ... Libraries were sequenced on an Illumina NovaSeq 6000 (Illumina, San Diego, USA) using a 250 bp paired end read protocol ...
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bioRxiv - Microbiology 2024Quote: Genomic DNA from each W2 sample was sequenced (Illumina MiSeq 150×2 bp, GENOSCREEN, France) yielding 15.8 ±8 million paired-ends reads per sample ...
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bioRxiv - Microbiology 2024Quote: ... and 100-bp paired-end reads were sequenced using a NovaSeq 6000 system (Illumina). The obtained reads were aligned to the genome sequence of T2Bo strain release-63 retrieved from PiroplasmaDB [45] with TopHat2 v2.1.1 [46] ...
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bioRxiv - Microbiology 2024Quote: ... the library was constructed using a TruSeq standard mRNA LT Sample Prep kit (Illumina), and 100-bp paired-end reads were sequenced using a NovaSeq 6000 system (Illumina) ...
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bioRxiv - Microbiology 2024Quote: ... The genome of recombinants was sequenced by MiSeq sequencing (Illumina, CA, USA) (mean coverage 100x ...
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bioRxiv - Molecular Biology 2024Quote: ... The libraries were loaded into an Illumina flowcell (Illumina, San Diego, CA) on a NovaSeq instrument for paired-end 50 reads.
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bioRxiv - Molecular Biology 2024Quote: ... then pooled in equimolar ratios and sequenced on a HiSeq 4000 (Illumina, San Diego, CA, USA) at the Stanford Genome Sequencing Service Center ...
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bioRxiv - Molecular Biology 2024Quote: ... DNA was purified with phenol:chloroform method and sequenced on MiniSeq platform (Illumina) with paired-end 150 cycles (75 + 75) ...
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bioRxiv - Molecular Biology 2024Quote: ... ChIP-seq library preparation was done using the TruSeq Nano DNA Library Prep Kit (Illumina, San Diego, CA, USA) and then sequenced with the HiSEq 2500 sequencing platform (performed at the NYUAD Sequencing Center).
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bioRxiv - Molecular Biology 2024Quote: ... sequencing reads from Illumina NovaSeq PE150 were de-multiplexed based on the inner barcodes and the sequence between the bait site and the nested PCR I5 primers using the fastq-multx tool from ea-utils ...
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bioRxiv - Molecular Biology 2024Quote: ... The sequencing was done with sequencing by synthesis (Illumina).
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bioRxiv - Molecular Biology 2024Quote: ... Plasmid DNA was isolated and representation of the pool was verified by Illumina sequencing.
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bioRxiv - Neuroscience 2024Quote: ... Qualified libraries underwent paired-end sequencing on an Illumina NovaSeq System (Illumina, Inc., USA).
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bioRxiv - Molecular Biology 2024Quote: ... The TruSeq Stranded mRNA kit (Illumina) was used for library preparation in the following steps ...
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bioRxiv - Microbiology 2024Quote: ... loaded in MiSeq Reagent Kit v2-300 (Illumina, San Diego, CA, USA) at concentration of 10 pM ...
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bioRxiv - Microbiology 2024Quote: Indexed sequencing libraries were generated from 1 ng genomic DNA using Nextera XT DNA Library Preparation Kit (Illumina, San Diego, CA, USA) following the protocol of the manufacturer ...
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bioRxiv - Microbiology 2024Quote: ... The prepared libraries were sequenced on an Illumina Miseq platform (Illumina, Inc., San Diego, CA, USA) at GENEWIZ ...
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bioRxiv - Microbiology 2024Quote: ... Indexed amplicons were verified on an Agilent 2100 Bioanalyzer system and sequenced on a MiSeq benchtop sequencer (Illumina) using the v3 600-cycle (paired end ...
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bioRxiv - Microbiology 2024Quote: ... Paired-end 150 nt reads were generated using the Illumina NovaSeq 6000 System (Illumina, San Diego, CA, USA).
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bioRxiv - Microbiology 2024Quote: RNA from turbinate samples were sequenced in duplicate by reverse-transcription and amplification using the IDT-Swift Biosciences SARS-CoV-2 assay with v2 primers and sequenced on an Illumina NextSeq 2000 (Illumina, Inc). Reads were processed and inoculum consensus genome was generated with TAYLOR (https://github.com/greninger-lab/covid_swift_pipeline) ...
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bioRxiv - Molecular Biology 2024Quote: ... Library preparation was performed using the Nextera XT DNA Library Preparation Kit (Illumina). Sequencing was performed using the NovaSeq 6000 SP Reagent Kit v 1.0 (Illumina ...
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bioRxiv - Microbiology 2024Quote: ... The final library was submitted to the MiSeq platform (Illumina, CA, USA) to achieve 2000x coverage and the results obtained in the Illumina Basespace Sequence Hub ...
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bioRxiv - Molecular Biology 2024Quote: Libraries were constructed using the D-Plex Small RNA-seq Kit from Illumina (Diagenode, C05030001) and the short RNA fraction was sequenced on the NextSeq 500 System (Illumina ...
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bioRxiv - Microbiology 2024Quote: ... and the subsequent shotgun sequencing was executed on a NovaSeq 6000 system (Illumina Inc., San Diego, CA, USA). Read quality was assessed using FastP v0.23.2 ...
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bioRxiv - Microbiology 2024Quote: ... RNA-seq libraries were prepared using the TruSeq stranded mRNA kit (Illumina) and 500 ng total RNA as templates ...
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bioRxiv - Microbiology 2024Quote: ... 6000 platform (Illumina). Data analysis was performed using BMKCloud (www.biocloud.net) ...