Labshake search
Citations for Illumina :
5501 - 5550 of 5691 citations for TD 5108 CAS 866933 46 2 99% since 2020
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Evolutionary Biology 2020Quote: ... We prepared a genomic DNA library of these 343 DNA samples using a modified version of the Nextera DNA library prep kit (∼ 350bp insert size, Illumina Inc., San Diego, CA, USA) meant to conserve reagents ...
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bioRxiv - Microbiology 2021Quote: ... Libraries for shotgun metagenomic sequencing were prepared using a PCR-free method at Novogene (Nanjing, China) on a HiSeq instrument (Illumina Inc. San Diego, CA, USA) with 150 bp paired-end reads and 6 Gb data/sample ...
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bioRxiv - Cancer Biology 2020Quote: ... A sequencing library was constructed using 100 ng of total RNA and a TruSeq RNA Access Library Prep Kit (Illumina, Inc., San Diego, CA, USA), according to the manufacturer’s protocols ...
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bioRxiv - Immunology 2020Quote: ... before fragmenting the samples to 450bp fragments and processing with the Illumina TruSeq DNA PCR-Free Sample Preparation kit (Illumina Inc., San Diego, CA, USA). Over the three-year duration of the sequencing phase of the project ...
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bioRxiv - Plant Biology 2021Quote: ... and pooled libraries of 20 barcoded samples were sent for pair-end sequencing using an Illumina HiSeqTM 2500 sequencing platform (Illumina Inc., San Diego, CA, USA).
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bioRxiv - Plant Biology 2020Quote: ... Paired-end sequencing of a 300-bp sequence spanning the V4 region of the ribosomal 16 S rRNA was generated using the Illumina MiSeq platform (Illumina Inc., San Diego, CA, USA). Overall ...
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bioRxiv - Genetics 2021Quote: A custom genotyping microarray for selected feline disease and trait associated variants (S2 Table) was developed based on the robust and widely utilized Illumina Infinium XT platform (Illumina, Inc., San Diego, CA, USA), commercially available as the Complete for Cats™ / MyCatDNA™ / Optimal Selection™ Feline tests ...
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bioRxiv - Microbiology 2021Quote: ... The constructed libraries were sequenced as pair-end reads (with a 301-bp read length) on the Illumina MiSeq system (Illumina, San Diego, CA, United States). The strain B50 genome (accession no. ...
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bioRxiv - Microbiology 2021Quote: ... Total RNA of the paddy soils was subjected to an rRNA removal procedure using the Ribo-Zero rRNA removal bacteria kit (Illumina Inc., San Diego, CA, USA) following the manufacturer’s protocol.
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bioRxiv - Microbiology 2021Quote: ... The libraries were then sequenced using the 150 bp paired-end sequencing strategy on the Illumina Hiseq 2500 platform (Illumina, Inc, San Diego, CA, USA). All raw sequencing data has been deposited in the NCBI Short Read Archive (SRA ...
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bioRxiv - Cell Biology 2020Quote: ... 75 pg of DNA generated with SMART-Seq v4 Kit were used for preparation of library with NEXTERA XT DNA Library Preparation kit (Illumina Inc., San Diego, CA, USA), following suggested protocol ...
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bioRxiv - Genomics 2022Quote: ... were sent to BGI-Shenzhen (Shenzhen, China) for library construction and sequencing on the using Illumina Genome Analyzer IIx (GAIIx) platform (Illumina Inc., San Diego, CA, USA) to generate single-end reads.
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bioRxiv - Genomics 2022Quote: ... The DNA sample was sent to BGI Shenzhen (Shenzhen, China) for library construction and de novo sequencing on the Illumina HiSeq2000 and HiSeq2500 platform (Illumina Inc., San Diego, CA, USA) and the PacBio RS II platform (PacBio Inc. ...
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bioRxiv - Genomics 2022Quote: ... A total of five samples (three biological replicates for each of five samples) were sequenced to generate paired-end reads using an Illumina HiSeqTM 2000 platform (Illumina Inc., San Diego, CA, USA) according to the manufacturer’s instructions.
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bioRxiv - Neuroscience 2022Quote: Total RNAs from cultured mouse WT and CD38 KO astrocytes at 5 DIV were used for RNA library preparation using TruSeq Stranded mRNA Sample Preparation Kit (Illumina, Inc., San Diego, CA, USA), with polyA selection for ribosomal RNA depletion.
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bioRxiv - Microbiology 2021Quote: ... and gDNA mocks were included in each PCR plate and sequenced alongside the samples sequenced with an Illumina MiSeq instrument (Illumina Inc., San Diego, CA, US) following manufacturer’s recommendations.
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bioRxiv - Microbiology 2020Quote: ... 50-100 ng of DNA per patient sample were submitted to the Scripps Research genomics core for next-generation sequencing which was performed using the MiSeq platform (Illumina Inc, San Diego, CA, USA). For taxonomy based on 16S rDNA amplicon sequencing ...
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bioRxiv - Plant Biology 2021Quote: ... for 96-plex Genotyping-by-Sequencing (GBS) library preparation using the ApeKI restriction enzyme and sequenced (1 × 100 bp) on the Illumina HiSeq 2500 (Illumina, Inc., San Diego, CA, USA) platform.
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bioRxiv - Molecular Biology 2020Quote: ... the purified sample was used as the template for barcoding with Nextera XT Index Kit v2 (FC-131-1002 - Illumina Inc, San Diego, CA, USA). The finished libraries were normalized to 4 nM and pooled ...
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bioRxiv - Neuroscience 2021Quote: ... using Agilent SureSelectXT Clinical Research Exome (SureSelectXT Human All Exon V5 baited with clinically relevant genes) and the Illumina NextSeq 550 sequencer (Illumina, Inc., San Diego, CA, USA) according to the manufacturer’s protocol.
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bioRxiv - Plant Biology 2021Quote: ... and sequencing of the GT1 x RRIM701 and GT1 x PB235 populations was performed with the GAIIx platform (Illumina Inc., San Diego, CA, United States). Processing of the GBS data from both experiments was carried out at the same time ...
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bioRxiv - Plant Biology 2021Quote: ... were randomly pooled (4 samples per pool) and grouped using the TruSeq Paired-End Reads Cluster Kit on the cBot platform (Illumina Inc., San Diego, CA, USA). The cDNA libraries were posteriorly sequenced on the Illumina Genome platform Analyzer IIx with a TruSeq kit with 36 cycles (Illumina ...
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bioRxiv - Cancer Biology 2022Quote: ... Libraries were run in the rapid run flow cell and were single-end sequenced (65 bp) in the rapid run flow cell on HiSeq 1500 (Illumina, San Diego, CA 92122 USA).
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bioRxiv - Cancer Biology 2020Quote: ... Nuclei were centrifuged at 500 g for 10 min and immediately resuspended in 25 µl of buffer containing 2.5 µl of Tn5 transposase (Illumina, Inc., San Diego, CA cat # 15027865) for a 30 min incubation at 37oC ...
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bioRxiv - Pharmacology and Toxicology 2021Quote: ... The pooled TempO-Seq® library was sequenced in-house using the NextSeq® 500/550 High Output Kits v2 (75 cycles) on an Illumina NextSeq 500 High-Throughput Sequencing System (Illumina, San Diego, CA, USA). A median read depth of 2 million reads/sample was achieved.
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bioRxiv - Microbiology 2020Quote: ... 1 ug of RNA was used for library preparation using the Illumina TruSeq™ Stranded mRNA LT Sample PrepKit according to the manufacturer’s instructions (Cat. No. RS-122-2101, Illumina Inc. San Diego, CA, USA). Library quality was checked with a 4200 TapeStation System (Agilent Technologies ...
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bioRxiv - Microbiology 2021Quote: ... the Luminex xMAP® Salmonella Serotyping Assay (Luminex, Madison, WI, USA) and metagenomic sequencing using the Illumina MiSeq benchtop sequencer (Illumina, San Diego, CA, USA). For the Luminex assay ...
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bioRxiv - Pathology 2021Quote: ... The single nucleotide polymorphisms (SNPs) in BRSK2 gene region were genotyped by Infinium Asian Screening Array and Infinium Multi-Ethnic Global BeadChip (Illumina, Inc., San Diego, CA, USA), and SNPs passed through quality-control procedure (individual call rate >98% and approved with Hardy-Weinberg equilibrium ...
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bioRxiv - Genomics 2020Quote: ... The hybridized samples were subsequently pooled at equimolar ratios and sequenced at the Oklahoma Medical Research Foundation (Oklahoma, OK, USA) using a HiSeq 3000 (Illumina, Inc., San Diego, CA, USA).
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bioRxiv - Cancer Biology 2020Quote: ... the genomic DNA extracted from whole mononuclear cells from fresh BM aspirates underwent amplicon-based targeted NGS analysis on a MiSeq sequencer (Illumina Inc., San Diego, CA, USA), as described previously52 ...
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bioRxiv - Microbiology 2021Quote: ... An Illumina Nextera XT library was prepared for paired-end sequencing on an Illumina NextSeq 500 with a Mid Output v2 kit (300 cycles) (Illumina Inc., San Diego, CA, USA). Paired-end reads (2×151 bp ...
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bioRxiv - Plant Biology 2021Quote: ... and mRNA-seq libraries were constructed and sequenced by the University of Missouri DNA Core Facility using the TruSeq Stranded mRNA Sample Prep Kit (Illumina, Inc., San Diego, CA, USA) and the Illumina HiSeq and NextSeq platforms.
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bioRxiv - Evolutionary Biology 2020Quote: ... The remaining amplicons were sequenced in two independent runs using 300 bp paired-end sequencing in an Illumina MiSeq (Illumina Inc., San Diego, CA, USA) following the manufacturer’s instructions at the Department of Biology ...
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bioRxiv - Microbiology 2021Quote: ... A library was prepared by adaptor ligation with the PCR primer pairs using the TruSeq Nano DNA Library Prep Kit (Illumina, Inc., San Diego, CA, USA). When two or more bands were detected using 1.5%-agarose gel electrophoresis ...
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bioRxiv - Genomics 2020Quote: ... Equimolar amounts were shipped to the Australian Genomics Research Facility (AGRF, Melbourne, VIC, Australia) for processing via the Infinium® Methylation EPIC BeadChip (Illumina, San Diego, CA USA).
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bioRxiv - Evolutionary Biology 2021Quote: ... 2016) on the Cervine Illumina BeadChip (Brauning et al., 2015) using an Illumina genotyping platform and Illumina GenomeStudio software (Illumina Inc., San Diego, CA, USA). All SNPs on the Cervine Illumina BeadChip are named based on their synteny with the cattle genome BTA vUMD 3.0 (e.g ...
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bioRxiv - Microbiology 2020Quote: ... Samples were then pooled at up to 184 samples per sequencing run and sequenced on an Illumina MiSeq (Illumina, Inc., San Diego, CA, United States) in 2×300 bp run mode ...
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bioRxiv - Developmental Biology 2021Quote: ... Libraries were prepared according to the Illumina TruSeq RNA protocol and sequenced with paired-end 150 bp on the Illumina HiSeq2000 platform (Illumina, Inc., San Diego, CA, USA). The resulting short reads were deposited in the SRA database at the NCBI under BioProject accession number PRJNA686085 ...
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bioRxiv - Genomics 2021Quote: ... 12 samples were pooled into a single lane and sequenced via 150-cycle paired-end sequencing on the Illumina HiSeq 4000 platform (Illumina, Inc., San Diego, CA, USA).
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Genetic and environmental determinants of variation in the plasma lipidome of older Australian twinsbioRxiv - Genetics 2020Quote: ... Assays for gene expression were performed using the Illumina Whole-Genome Gene Expression Direct Hybridization Assay System HumanHT-12 v4 (Illumina Inc., San Diego, CA, USA) in accordance with standard manufacturer protocols ...
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bioRxiv - Genetics 2020Quote: ... Illumina adapters were incorporated onto the 5’ end of each primer for the attachment of Nextera XT Illumina indices (Illumina, Inc., San Diego, CA, USA) in the second round of PCR ...
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bioRxiv - Microbiology 2023Quote: ... (Text S1.), while sequencing was performed at the Swedish National Genomics Infrastructure (NGI) (Uppsala, Sweden) on Illumina MiSeq platform (Illumina Inc, San Diego, CA, USA) in a 2×300 bp paired-end format and with v3 chemistry.
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bioRxiv - Microbiology 2023Quote: ... Size selection and purification of the metagenomic libraries was carried out using SparQ PureMag beads (Quantabio, Beverly, MA, USA) and an Illumina Genome Analyzer (Illumina Inc., San Diego, CA, USA) with a KABA SYBR Fast Universal qPCR Kit (Kapa Biosystems ...
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bioRxiv - Systems Biology 2023Quote: ... The resulting amplicon libraries were normalized and sequenced on an Illumina sequencing platform using a MiSeq Reagent Kit V2 (Illumina Inc., San Diego, CA, USA). The final load concentration was 4.0-5.5 pM with a 15% PhiX spike to add diversity.
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bioRxiv - Developmental Biology 2023Quote: ... single end sequencing was performed on an Illumina NextSeq 500 sequencer using a 75 bp HO sequencing kit (v2) (Illumina Inc., San Diego, CA, USA), with all libraries run across 2 flowcells ...
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bioRxiv - Cancer Biology 2023Quote: ... paired end sequencing was performed on an Illumina NextSeq 500 sequencer using a 150 bp HO sequencing kit (v2) (Illumina Inc., San Diego, CA, USA) or 50 bp ...
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bioRxiv - Immunology 2023Quote: ... RNA libraries were prepared from a starting quantity of 100 ng high quality RNA using the TruSeq RNA Library Prep Kit v2 (Illumina Inc., San Diego, CA, USA). Individually barcoded RNA-seq libraries were pooled in equimolar quantities and the quantity and quality of the final pooled libraries (two different pools in total ...
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bioRxiv - Plant Biology 2023Quote: ... with insert sizes ranging from 100 to 600 bp using a commercial kit (TruSeq stranded mRNA Sample Preparation Kit; Illumina Inc., San Diego, CA, USA). The libraries were sequenced for 100 bases using an Illumina Hiseq 2500 SE100 system.
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bioRxiv - Immunology 2023Quote: ... Dual-indexed libraries were subsequently pooled and sequenced to a target depth of 30X coverage on the Illumina NovaSeq 6000 platform (Illumina Inc, San Diego, CA, USA), with v1.5 chemistry kits generating paired-end (2×150 bp ...
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bioRxiv - Immunology 2023Quote: ... RNA libraries were prepared from a starting quantity of 100 ng high quality RNA using the TruSeq RNA Library Prep Kit v2 (Illumina Inc., San Diego, CA, USA). All RNA samples used for transcriptomic analysis (n = 6 per group ...