Labshake search
Citations for Illumina :
5451 - 5500 of 5691 citations for TD 5108 CAS 866933 46 2 99% since 2020
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Immunology 2022Quote: ... a multiplexed amplicon-based whole-viral-genome approach using the NEBNext® ARTIC SARS-CoV-2 Library Prep Kit (Illumina®) was employed (New England Biolabs ...
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bioRxiv - Microbiology 2021Quote: ... Library preparation of amplified SARS-CoV-2 DNA for sequencing was performed using a Nextera XT library prep kit (Illumina Inc.) following the manufacturer’s protocol ...
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bioRxiv - Microbiology 2021Quote: ... Library preparation of amplified SARS-CoV-2 DNA for sequencing was performed using a Nextera XT library prep kit (Illumina Inc.) following the manufacturer’s protocol ...
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bioRxiv - Cell Biology 2022Quote: ... The pool was then quantified with qPCR and a final pool (2 nM) was made for single-read sequencing on the HiSeq4000 (Illumina Inc). The settings were 51-8-8 ...
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bioRxiv - Microbiology 2020Quote: ... Short reads were obtained using NovaSeq6000 S2 Reagent Kit (300cycles) and S2 flow cell on a NovaSeq6000 (2×150-bp paired-end) system (Illumina, USA) at Eurofins Genomics GmbH ...
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bioRxiv - Systems Biology 2020Quote: Pooled libraries of 2 nM were denatured and diluted as per the Standard Normalization Method for the NextSeq® System (Illumina). Final loading concentration of 1.8 pM and 1% PhiX (v/v ...
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bioRxiv - Microbiology 2021Quote: ... Paired-end Illumina sequencing was performed on a MiSeq instrument (v3 chemistry, 2 × 300 bp) according to manufacturer instructions (Illumina Inc.).
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bioRxiv - Genetics 2020Quote: ... The Illumina MiSeq platform was used with the shotgun 2 x 250 paired-end sequencing methodology (Nextera DNA Preparation Kit, Illumina, USA). The sample used 0.33 of a flow cell and primer design was optimized for use with Platinum Taq DNA polymerase (Invitrogen ...
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bioRxiv - Cancer Biology 2020Quote: ... as per manufacturer’s instructions and sequenced on HiSeq 2000 to generate paired end 2 × 100bp sequence reads (Illumina, San Diego, USA). Additionally ...
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bioRxiv - Genomics 2020Quote: ... and sequenced on an Illumina NextSeq 500 (NextSeq control software v2.0.2/Real Time Analysis v2.4.11) using a 150-cycle NextSeq 500/550 High Output Reagent Kit v2 (Illumina, FC-404-2002) in standalone mode as follows ...
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bioRxiv - Microbiology 2021Quote: ... Sequencing of the pooled libraries was performed using an Illumina MiSeq benchtop sequencer and 2×250bp paired-end reads MiSeq v2 kit-500 cycles reagents (Illumina, USA). Raw reads were trimmed of remnant sequencing adapters sequences and low-quality regions (Phred score < Q20 ...
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bioRxiv - Microbiology 2020Quote: ... Sequencing of the resulting library was carried out from both ends (2×300 bp) with the 600-cycle MiSeq Reagent Kit v3 on MiSeq (Illumina, USA) and the adapters trimmed from the resulting reads at the facility.
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bioRxiv - Microbiology 2020Quote: ... Equimolar pooled library was sequenced on an Illumina MiSeq platform using 2×300bp reagent kit (Miseq reagent kit v3; Illumina Inc.) for paired-end sequencing ...
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bioRxiv - Immunology 2021Quote: ... Samples were sequenced on an Illumina Novaseq 6000 S4 flowcell (67 bp read 1 and 140 bp read 2) (Illumina, USA) to a depth of approximately 100,000 reads per cell ...
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bioRxiv - Immunology 2021Quote: ... Final libraries were pooled and sequenced using a High output single-end 75 cycle (version 2) sequencing kit using the Illumina Nextseq 550 platform (Illumina, USA).
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bioRxiv - Immunology 2021Quote: ... whose lengths were about 600 base pairs were sequenced using an Illumina Novaseq 6000 S4 flowcell (67 bp read 1 and 140 bp read 2) (Illumina, USA). Only read2 contained the sequence regarding the definition of T cell clones.
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bioRxiv - Genomics 2021Quote: For miRNA expression analysis 2 µg of the small RNA was polyadenylated using the Poly(A) Tailing kit (epicenter-An Illumina company) following the manufacturer’s protocol ...
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bioRxiv - Molecular Biology 2022Quote: ... Sequencing libraries were prepared at GenomeScan (Netherlands) and submitted to 2×150 pair-end sequencing in a NovaSeq™ 6000 sequencer (Illumina). Reads were mapped to the reference LdBPK282-V2 genome (11 ...
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bioRxiv - Molecular Biology 2023Quote: ... PCR-amplified libraries were quantified on a Bioanalyser and appropriately diluted and multiplexed for deep sequencing (Illumina MiSeq 2×75 bp).
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bioRxiv - Neuroscience 2022Quote: ... Strand-specific libraries were generated using the TruSeq Stranded mRNA sample preparation kit (Illumina Inc., San Diego, RS-122-2101/2), according to the manufacturer’s instructions (Illumina ...
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bioRxiv - Plant Biology 2023Quote: ... libraries were prepared from 2 µg of total RNA using the TruSeq RNA Sample Prep Kit (Illumina, Cat # FC- 122-1001) and sequenced on the HiSeq 4000 to produce at least 18 million 50 bp single-end reads.
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bioRxiv - Microbiology 2023Quote: ... Equal amounts of PCR product (2 µl 4nM) were pooled and sequenced on an Illumina MiSeq Sequencer (Illumina, San Diego, USA) using a paired-end 300bp V3 kit at Utrecht Sequencing Facility (www.useq.nl).
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bioRxiv - Genomics 2023Quote: ... The pooled libraries were loaded into a MiSeq system and sequenced using a MiSeq reagent kit v2 with 2 × 250 cycles (Illumina, Inc.). The MiSeq reads were assembled using Newbler assembler (v2.9).
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bioRxiv - Microbiology 2023Quote: ... The 16S rRNA gene V1-V3 amplicon libraries were pooled in equimolar concentrations and paired-end sequenced (2 × 300 bp) on the Illumina MiSeq using v3 chemistry (Illumina, USA). 10 to 20% PhiX control library was added to mitigate low diversity library effects.
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bioRxiv - Microbiology 2023Quote: ... Samples were equimolarly pooled with 10% PhiX control DNA and sequenced on an Illumina MiSeq using a MiSeq 2 × 250 v2 kit (Illumina, Inc.). Due to the number of samples ...
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bioRxiv - Plant Biology 2022Quote: ... Eighteen cDNA libraries were prepared using the Illumina TruSeq RNA Sample preparation Kit v.2 according to the low-throughput protocol (Illumina, USA). Each library corresponded to three biological replicates of wild-type tomato fruit at MG and RR stages 3 days after treatment ...
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bioRxiv - Plant Biology 2022Quote: ... mRNAs were sequenced in a HiSeq 3000 sequencing system with 2 × 125 bp paired-end sequences (Illumina HiSeq SBS Kit v4) by the Genotoul bioinformatics platform ...
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bioRxiv - Molecular Biology 2022Quote: ... 1.5 μl of PCR 1 were used as template for PCR 2 (14 cycles) and used forward primers 5’-AATGATACGGCGACCACCGAGATCTACAC-NNNNNNNN-ACACTCTTTCCCTACACGAC-3’ (compatible to Illumina i5) and reverse primers 5’-CAAGCAGAAGACGGCATACGAGAT-NNNNNNNN-GTGACTGGAGTTCAGACGTG-3’ (compatible to Illumina i7) ...
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bioRxiv - Cancer Biology 2022Quote: ... Strand-specific libraries were generated using the TruSeq Stranded mRNA sample preparation kit (Illumina Inc., San Diego, RS-122-2101/2) according to the manufacturer’s instructions ...
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bioRxiv - Genomics 2023Quote: ... Urine samples were then sequenced with (either the 2 x 150 bp or 2 x 75 bp configuration) to a mean depth of 30 M reads per sample on NextSeq 2000 (Illumina Inc); sequencing length did not impact gene detection efficiency (Supplementary Fig ...
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bioRxiv - Genomics 2023Quote: ... one PCR-Free DNA library with 350-400 bp inserts was constructed and paired-end sequenced (2 × 150 bp) on an Illumina NovaSeq 6000 system (Illumina, USA), and two libraries with 15-20 kb inserts were prepared and sequenced on a PacBio Sequel II platform using Circular consensus sequence (CCS ...
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bioRxiv - Genomics 2022Quote: ... and sequenced on a NextSeq 500 instrument (NextSeq 500/550 High Output Kit v2.5 (Illumina, 20024907, PE 2 x 75 cycles)) ...
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bioRxiv - Evolutionary Biology 2022Quote: ... The paired-end (2×300 bp) sequencing was then performed by Macrogen using the MiSeq™ platform (Illumina, San Diego, USA)
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bioRxiv - Genomics 2024Quote: Both read 1 and read 2 files from each spatial region were mapped to the mm10 reference genome (source: Illumina igenomes) using the bowtie2 package (v2.5.1 ...
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bioRxiv - Microbiology 2024Quote: ... The cDNA libraries were constructed using the NEBNext® Ultra II Directional RNA Library Prep Kit for Illumina® and sequenced in paired-end (2×150 bp) on a NovaSeq 6000 (Illumina). After the confirmation of multiple virus infections in H ...
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bioRxiv - Molecular Biology 2024Quote: ... the pool of plasmids for each library (inputs) was amplified using primers bearing sequences from Illumina (Read 1 and Read 2) and complementary to PT1 and down to Moe (Figure 1C) ...
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bioRxiv - Microbiology 2024Quote: ... (v.1.0.2) was used to check the quality of bins output by DAS Tool (HiFi and hybrid assemblies) and metabat2 (Illumina assemblies). These bins were used as input for the steps below.
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bioRxiv - Microbiology 2024Quote: ... The genomic libraries were then sequenced on a MiSeq instrument with a MiSeq Reagent Kit v2 (300 cycles; 2 x 150 bp) (Illumina Inc.).
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bioRxiv - Microbiology 2024Quote: RNA from turbinate samples were sequenced in duplicate by reverse-transcription and amplification using the IDT-Swift Biosciences SARS-CoV-2 assay with v2 primers and sequenced on an Illumina NextSeq 2000 (Illumina, Inc). Reads were processed and inoculum consensus genome was generated with TAYLOR (https://github.com/greninger-lab/covid_swift_pipeline) ...
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bioRxiv - Genomics 2024Quote: We then pooled the original and targeted libraries at a 2:1 molar concentration and sequenced them together on a NovaSeq 6000 (Illumina, 20012850) with a S1 Reagent Kit v1.5 (200 cycles ...
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bioRxiv - Genomics 2024Quote: ... we further pooled the hybrid selection into 3 “super pools.” 2) The hybrid selected libraries were sequenced on a NovaSeq 6000 (Illumina, 20012850) with a S1 Reagent Kit v1.5 (200 cycles ...
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bioRxiv - Bioengineering 2024Quote: ... and 60 ng of each were pooled into a single NGS library that was sequenced on a NextSeq 2000 using a P3 2×51 cycle paired-end run (Illumina, 20040559).
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bioRxiv - Developmental Biology 2024Quote: ... Fragments were sequenced using a 150×2 paired terminal sequencing scheme on the Illumina Novase Q6000 analyzer (Illumina HiSeq sequencing platform) to obtain the sequencing results ...
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bioRxiv - Evolutionary Biology 2020Quote: ... The hybridized samples were subsequently pooled at equimolar ratios and sequenced at the Texas Tech Center for Biotechnology and Genomics using a MiSeq with the Micro chemistry and 150 bp paired-end reads (Illumina, Inc., San Diego, CA, USA).
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bioRxiv - Evolutionary Biology 2020Quote: ... and a total of 4 μg of total RNA was used to construct paired-end libraries using the TruSeq RNA Sample Preparation Kit v3 (Illumina, Inc., San Diego, CA, USA) according to the manufacturer’s instructions ...
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bioRxiv - Microbiology 2022Quote: ... Libraries were constructed from 300 ng of total RNA from sample provided by our laboratory using the TruSeq® Stranded Total RNA Library Prep (Illumina, Inc. San Diego, CA) following the recommended protocol ...
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bioRxiv - Genetics 2020Quote: ... DNA was extracted from whole blood and genotyping was performed at the Wellcome Trust Sanger Institute (Hinxton, UK) on the Human670-QuadCustom Illumina BeadChip (Illumina, Inc., San Diego, CA, USA), as previously described (103–105) ...
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bioRxiv - Genomics 2020Quote: ... Post-capture DNA libraries were combined into 10 pools of approximately 96 samples each and sequenced on three lanes on an Illumina HiSeq 3000 (Illumina Inc., San Diego, CA, USA) to generate approximately 0.5 million 2x150-bp paired-end reads per sample ...
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bioRxiv - Genomics 2021Quote: ... Equimolar amounts were shipped to the Australian Genomics Research Facility (AGRF, Melbourne, VIC, Australia) for processing via the Infinium® Methylation EPIC BeadChip (Illumina, San Diego, CA USA). The arrays were carried out in groups over three batches ...
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bioRxiv - Evolutionary Biology 2021Quote: ... Approximately 5 ug of total RNAs were used to construct cDNA libraries (NEBNext Ultra Directional RNA Library Prep Kit for Illumina, Illumina, San Diego, CA, USA). Transcriptome sequencing was performed using the Illumina Hi-Seq 2000 platform ...