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Citations for Illumina :
4901 - 4950 of 10000+ citations since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Genomics 2023Quote: ... and then sequenced on a MiSeq sequencer (Illumina).
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bioRxiv - Genetics 2023Quote: All autosomal SNP loci tested in this study originate from the BovineSNP50 Genotyping BeadChip and BovineHD Genotyping BeadChip (Illumina). A set of 231 informative SNP loci for the European bison was selected from available publications for initial testing (Supplementary File SNP_marker_list_details.xlsx) ...
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bioRxiv - Genetics 2023Quote: ... All accessions were genotyped using an Illumina HiSeq X Ten or HiSeq 4000 (Illumina), and 4,776,813 single-nucleotide poly-morphisms (SNPs ...
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bioRxiv - Genomics 2023Quote: ... and 0.2x (v/v) TB1 (Illumina Inc.). The nuclear pellet was resuspended with an additional 30 μl of loading buffer ...
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bioRxiv - Genomics 2023Quote: ... Libraries were then diluted and sequenced on a NextSeq 500 Mid flow cell or a NovaSeq 6000 S4 flow cell (Illumina Inc.).
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bioRxiv - Genomics 2023Quote: ... The resulting library was sequenced on a NextSeq 550 Platform (Illumina Inc.) using a Mid Output Kit with the following cycles ...
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bioRxiv - Genomics 2023Quote: A 96-well plate pre-loaded with 5 μl of 500 nM pre-indexed Tn5 transposase per well (iTSM plate, kind gift of Illumina Inc.) was used to multiplex samples and perform barcoded transposition ...
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bioRxiv - Genomics 2023Quote: ... and then sequenced on a NextSeq 550 Platform (Illumina Inc.) using a Mid Output Kit with the following cycles ...
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bioRxiv - Genomics 2023Quote: ... Two biological replicates of 7.5 × 104 cells for each condition were then isolated for direct processing with Nextera Tn5 enzyme (Illumina, FC-131-1096). Samples were treated as previously described (77 ...
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bioRxiv - Genomics 2023Quote: ... (Marçais and Kingsford, 2011) and Genomescope (v2.0) (max k-mer coverage = 1,000,000) (Ranallo-Benavidez et al., 2020) from Illumina short reads ...
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bioRxiv - Genomics 2023Quote: ... The constructed Hi-C sequencing library was first subjected to a test run of sequencing to evaluate valid interaction read pairs using HiCPro (v3.1.0) (Servant et al., 2015) before high coverage sequencing by Illumina NovaSeq 6000 to yield 705 Gb (∼138× genome coverage ...
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bioRxiv - Molecular Biology 2023Quote: Sequencing reads were demultiplexed using the bcl2fastq software (Illumina). A custom script was used to determine frequencies of the introduced substitutions.
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bioRxiv - Molecular Biology 2023Quote: Sequencing reads were demultiplexed using the bcl2fastq software (Illumina). For calculating TPM of genes ...
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bioRxiv - Genomics 2023Quote: ... Samples were sequenced on a HiSeq2500 HighOutput (Illumina) with a 5% spike-in of PhiX ...
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bioRxiv - Molecular Biology 2023Quote: ... cDNA was sequenced (single read, 65 bp) on a HiSeq2500 platform (Illumina). Reads were mapped to SacCer3 using STAR (version 2.7.1a ...
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bioRxiv - Molecular Biology 2023Quote: ... Purified DNA was sequenced (single read, 65 bp) on a HiSeq2500 platform (Illumina). Data analysis is described in the Supplemental Material & Methods.
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bioRxiv - Molecular Biology 2023Quote: ... RNA-seq libraries were prepared using Illumina TruSeq Stranded Total RNA Library Prep Kit v2 (Illumina #RS-122-2001 and #RS-122-2002) and sequenced on NextSeq 500 using paired-end sequencing (2 x 75) ...
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bioRxiv - Genomics 2023Quote: ... The isolated samples were sequenced by Illumina MiSeq for screen 1 (14.3 million reads ...
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bioRxiv - Genomics 2023Quote: ... 1x standard storage buffer (Illumina Inc.), and 5 μM short SBS oligo (a final concentration of 1 μM SBS after resuspending nuclei in 10X Master Mix ...
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bioRxiv - Genomics 2023Quote: ... we pooled these libraries with 5% of bulk ATAC libraries (from an unrelated experiment) and sequenced them on a NextSeq 550 Sequencer (Illumina Inc.) using a High Output Kit with following cycles ...
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bioRxiv - Genomics 2023Quote: ... used in data analyses were as follows: bcl2fastq (v2.19.0 for brain analysis and v2.20.0.422 for the other samples, Illumina Inc.), Trimmomatic (v0.36 ...
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bioRxiv - Genomics 2023Quote: ... The filtered nuclei were pelleted at 500 r.c.f for 5 min in a pre-chilled fixed-angle centrifuge and then resuspended in 25 μl of 1.25x Tagment DNA Buffer (Nextera XT Kit, Illumina Inc. FC-131-1024). For cell cultures ...
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bioRxiv - Genomics 2023Quote: ... The RNA was used for preparing the library using TruSeq Stranded Total RNA Library Preparation kit (Illumina Inc., CA, USA) with Ribo-zero Plant workflow and sequenced on Illumina NovaSeq 6000 instrument for generated 150 bp paired-end reads.
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bioRxiv - Genomics 2023Quote: ... The nuclei were resuspended with 30 μl of loading buffer containing 1x TB1 (Illumina Inc.), 1x standard storage buffer (Illumina Inc.) ...
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bioRxiv - Genomics 2023Quote: ... 200 pg of cDNA were used for library preparation using Nextera XT (Illumina, FC-131-1096). Libraries were sequenced on an Illumina HiSeq 4000 with single-end reads of 50 bases.
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bioRxiv - Molecular Biology 2023Quote: ... Pooled amplicons were then sequenced on an Illumina MiniSeq system (300 cycles, Illumina sequencing kit #FC-420-1004) following the manufacturer’s protocol ...
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bioRxiv - Genomics 2023Quote: ... and Illumina PCR-free libraries with insert sizes of 350-bp were constructed using Truseq Nano DNA HT Sample preparation Kit (Illumina USA). Finally ...
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bioRxiv - Genomics 2023Quote: ... Library preparation was conducted using ribosomal RNA (rRNA) depletion by Illumina TruSeg Stranded Total RNA with Ribo-Zero Plus and NEBNext rRNA Depletion Kit (Zymo Genetics ...
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bioRxiv - Genomics 2023Quote: ... The paired-end library was prepared (2X150) and sequenced on the NovaSeq platform (Illumina). The raw sequence data from both the platforms has been submitted to NCBI SRA database under the BioProject ID PRJNA967221.
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bioRxiv - Genomics 2023Quote: ... and short-read (Illumina) datasets suggests the loss of CFAP46 due to a large segmental deletion ...
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bioRxiv - Molecular Biology 2023Quote: ... PRO-seq libraries were provided to Vanderbilt Technologies for Advanced Genomics (VANTAGE) for sequencing (Illumina Nextseq500, SE-75).
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bioRxiv - Molecular Biology 2023Quote: ... was used to prepare a whole-transcriptome sequencing library and sequenced on one lane of a NovaSeq 6000 SP (Illumina) machine.
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bioRxiv - Molecular Biology 2023Quote: ... samples were processed using the TruSeq Standard sample Prep Kit (Illumina) to prepare cDNA libraries after Poly(A ...
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bioRxiv - Molecular Biology 2023Quote: ... The resulting cDNA libraries were sequenced on the NextSeq 500 platform (Illumina) for 75 cycles in single-end high-output mode at the Australian Genome Research Facility.
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bioRxiv - Molecular Biology 2023Quote: ... The pellet was then resuspended in the transposition reaction mix (25 μL 2× TD buffer, 2.5μLTn5 Transposes (Illumina) and 22.5μL nuclease-free water ...
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bioRxiv - Molecular Biology 2023Quote: ... a targeted exome panel sequencing was performed by Next Generation Sequencing using the TrueSight One Sequencing Panel (Illumina). The results were compared with the reference sequence of the human TRPM4 gene (MIM# 606936 ...
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bioRxiv - Genomics 2023Quote: ... The mRNA was then subjected to transcriptome sequencing library construction using Illumina True-seq transcriptome kit (Illumina, CA) with an insert size of 370bp-420bp ...
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bioRxiv - Genomics 2023Quote: ... nine-cycles of PCR were performed using indexed primers from a Nextera Index kit (Illumina), and amplified DNA was size-selected to a size of <500 bp using AMPure XP beads (Beckman Coulter) ...
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bioRxiv - Microbiology 2023Quote: ... and sequencing using an Illumina MiSeq (v2, 2 × 150 bp) instrument (Illumina, USA).
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bioRxiv - Genomics 2023Quote: ... nuclei pellet was resuspended with the transposition reaction mix (25 µl of 2x reaction buffer and 2.5 µl of Tn5 transposase from Nextera Sample Preparation Kit (Illumina), mixed with 22.5 µl nuclease-free water ...
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bioRxiv - Genomics 2023Quote: ... The library was prepared using TruSeq Nano DNA (Illumina, CA, USA) according to the manufacturer’s library quantification protocol ...
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bioRxiv - Genomics 2023Quote: ... Sequencing was performed as pair-end (150 bp) using an Illumina NovaSeq6000 (Illumina) by Macrogen sequencing service (Macrogen Inc. ...
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bioRxiv - Genomics 2023Quote: We screened publicly available SRA datasets (Source: DNA, Platform: Illumina, Strategy: genome) originated mainly from the Apoidea superfamily (containing bees and bumblebees ...
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bioRxiv - Microbiology 2023Quote: ... One microliter of each eluted sample was used in polymerase chain reaction amplification of the variable region 4 of bacterial and archaeal 16S ribosomal RNA genes with barcoding primer set 515/806 based on the original Earth Microbiome Project protocol (Caporaso et al. 2011; “16S Illumina Amplicon ProtocolL ...
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bioRxiv - Microbiology 2023Quote: ... and barcoded using TruSeq indexes (Illumina). Amplification was followed in real time using SYBR-Green and stopped when reaching a plateau.
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bioRxiv - Neuroscience 2023Quote: Sequencing libraries were loaded on a NovaSeq 6000 (Illumina) using a S2 flow cell and reads/fragments were sequenced using a 200 Cycle Kit.
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bioRxiv - Neuroscience 2023Quote: ... Libraries were pooled and sequenced with a NovaSeq 6000 platform (S1 Cartridge; Illumina) in paired-end mode to reach a mean of 44,131 reads per single cell ...
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bioRxiv - Cell Biology 2023Quote: The libraries are sequenced in paired-end (2 x 150 cycles) through the SBS (sequencing by synthesis) technology using NovaSeq® 6000 (ILLUMINA®).
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bioRxiv - Cell Biology 2023Quote: Transcriptome samples and the pooled targeted sample were mixed and sequenced on a NovaSeq 6000 with the 200 cycle kit (Illumina, 20028313). Final sample ratio was determined by the number of targeted reads as described in Table M2.
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bioRxiv - Genomics 2023Quote: ... The pooled libraries were sequenced in the 2 × 150bp format to an average depth of 300 million reads/sample on a NovaSeq 6000 S4 (Illumina) by Psomagen Inc.