Labshake search
Citations for Illumina :
4601 - 4650 of 4662 citations for Genz 644282 CAS 529488 28 6 99% since 2020
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Genomics 2024Quote: ... were used to prepare Illumina libraries using the Nextera DNA Flex Library Prep Kit according to the manufacturers’ instructions (Illumina Inc. San Diego, CA, USA). Library quality was measured via electrophoresis in D1000 ScreenTape on an Agilent 4200 TapeStation System (Agilent Technologies Netherlands BV ...
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bioRxiv - Microbiology 2024Quote: ... and controls (n=30) were amplified using PCR with the F515 and R806 primer pair and sequenced using Illumina MiSeq platform (Illumina Inc., San Diego, CA, USA) (82) ...
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bioRxiv - Plant Biology 2022Quote: ... japonica essentially as described previously (Padmarasu et al., 2019), and were sequenced (v1.5 chemistry, paired-end, 2 x 111 cycles) using the NovaSeq6000 device from Illumina (Illumina Inc., San Diego, CA, USA) at IPK Gatersleben.
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bioRxiv - Microbiology 2023Quote: ... (Text S1.), while sequencing was performed at the Swedish National Genomics Infrastructure (NGI) (Uppsala, Sweden) on Illumina MiSeq platform (Illumina Inc, San Diego, CA, USA) in a 2×300 bp paired-end format and with v3 chemistry.
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bioRxiv - Microbiology 2023Quote: ... Size selection and purification of the metagenomic libraries was carried out using SparQ PureMag beads (Quantabio, Beverly, MA, USA) and an Illumina Genome Analyzer (Illumina Inc., San Diego, CA, USA) with a KABA SYBR Fast Universal qPCR Kit (Kapa Biosystems ...
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bioRxiv - Immunology 2023Quote: ... Dual-indexed libraries were subsequently pooled and sequenced to a target depth of 30X coverage on the Illumina NovaSeq 6000 platform (Illumina Inc, San Diego, CA, USA), with v1.5 chemistry kits generating paired-end (2×150 bp ...
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bioRxiv - Developmental Biology 2023Quote: ... single end sequencing was performed on an Illumina NextSeq 500 sequencer using a 75 bp HO sequencing kit (v2) (Illumina Inc., San Diego, CA, USA), with all libraries run across 2 flowcells ...
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bioRxiv - Microbiology 2023Quote: ... The 16S rRNA gene libraries were then sequenced on a NovaSeq 6000 instrument with a SP flow cell (2 × 250 bp) (Illumina Inc., San Diego, CA, USA).
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bioRxiv - Cancer Biology 2023Quote: ... paired end sequencing was performed on an Illumina NextSeq 500 sequencer using a 150 bp HO sequencing kit (v2) (Illumina Inc., San Diego, CA, USA) or 50 bp ...
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bioRxiv - Immunology 2023Quote: ... RNA libraries were prepared from a starting quantity of 100 ng high quality RNA using the TruSeq RNA Library Prep Kit v2 (Illumina Inc., San Diego, CA, USA). Individually barcoded RNA-seq libraries were pooled in equimolar quantities and the quantity and quality of the final pooled libraries (two different pools in total ...
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bioRxiv - Cancer Biology 2023Quote: ... The libraries were run in the rapid run flow cell and were paired end sequenced (2×76bp) on HiSeq 1500 (Illumina, San Diego, CA 92122 USA).
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bioRxiv - Plant Biology 2023Quote: ... with insert sizes ranging from 100 to 600 bp using a commercial kit (TruSeq stranded mRNA Sample Preparation Kit; Illumina Inc., San Diego, CA, USA). The libraries were sequenced for 100 bases using an Illumina Hiseq 2500 SE100 system.
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bioRxiv - Systems Biology 2023Quote: ... The resulting amplicon libraries were normalized and sequenced on an Illumina sequencing platform using a MiSeq Reagent Kit V2 (Illumina Inc., San Diego, CA, USA). The final load concentration was 4.0-5.5 pM with a 15% PhiX spike to add diversity.
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bioRxiv - Microbiology 2023Quote: ... A genomic library with average insert size of 350 bp was prepared for sequencing using a TruSeq Nano DNA library preparation kit (Illumina, Inc., San Diego, CA, USA). Paired-end 2 x 125 nt sequencing was performed by the MGX platform (CNRS ...
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bioRxiv - Microbiology 2023Quote: ... The tissue-derived Illumina libraries were sequenced using a 2 x 250 cycle MiSeq Reagent Kit v2 on a MiSeq platform (Illumina Inc., San Diego, CA, USA). The 16S rRNA gene V4-V5 region was amplified from each water sample and sequenced using the Illumina MiSeq platform (Illumina Inc. ...
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bioRxiv - Microbiology 2023Quote: ... The 16S rRNA gene V4-V5 region was amplified from each water sample and sequenced using the Illumina MiSeq platform (Illumina Inc., San Diego, CA, USA) (Tremblay et al. ...
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bioRxiv - Microbiology 2023Quote: ... and sequenced with a 2×250bp paired-end configuration on an Illumina MiSeq platform applying the MiSeq v2 500-cycle sequencing kit (Illumina Inc., San Diego, CA, USA).
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bioRxiv - Immunology 2023Quote: ... RNA libraries were prepared from a starting quantity of 100 ng high quality RNA using the TruSeq RNA Library Prep Kit v2 (Illumina Inc., San Diego, CA, USA). All RNA samples used for transcriptomic analysis (n = 6 per group ...
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bioRxiv - Immunology 2023Quote: ... Libraries were prepared using the TruSeq® RNA Sample Prep v2 kit with the IDT for Illumina DNA/RNA UD indexes (Illumina, San Diego, CA, USA). Purification and fragmentation of mRNA ...
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bioRxiv - Cell Biology 2023Quote: ... Purified total RNA was used to generate mRNA libraries using NEBNext Poly(A) mRNA Magnetic Isolation Module and NEBNext Ultra RNA Library Prep kit for Illumina (Illumina Inc., San Diego, CA, USA). Quality and quantity were assessed using an Agilent DNA1000 series chip assay and Invitrogen Qubit HS Kit (Invitrogen) ...
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bioRxiv - Cell Biology 2023Quote: cDNA libraries were prepared from 1 μg total RNA of each sample using the TruSeq Stranded mRNA Sample Prep Kit (Illumina, Inc., San Diego, CA, USA), according to the manufacturer’s instructions ...
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bioRxiv - Plant Biology 2024Quote: ... Genomic DNA was fragmented and simultaneously tagged so that the peak size of the fragments was approximately 500 bp using the Nextera® transposome (Illumina Inc., San Diego, CA). After purification of the transposome by DNA Clean & ConcentratorTM-5 (Zymo Research ...
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bioRxiv - Genomics 2024Quote: ... The libraries were prepared with Ampliseq Library Plus for Illumina kit (Illumina, San Diego, CA, USA and using Illumina’s Ampliseq CD indexes set A(Illumina), and their quality was assessed with High Sensitivity DNA reagents on an Agilent 2100 Bioanalyzer System ...
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bioRxiv - Microbiology 2024Quote: ... Parallel aliquots of the DNA samples used for ONT sequencing were used to prepare Illumina libraries using the Nextera DNA Flex Library Prep Kit as per protocol (Illumina Inc., San Diego, CA, USA). Library quality was measured using an Agilent 4200 TapeStation System as described above ...
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bioRxiv - Genetics 2024Quote: ... Genomic DNA was fragmented and simultaneously tagged so that the peak size of the fragments was approximately 500 bp using the Nextera® transposome (Illumina Inc., San Diego, CA). After purification of the transposome using DNA Clean & ConcentratorTM-5 (Zymo Research ...
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bioRxiv - Microbiology 2024Quote: Illumina sequencing was performed at the Lausanne Genomic Technologies Facility (GTF) of the Lausanne University using an Illumina MiSeq instrument in paired-end mode 2 x 250 nt (Illumina, San Diego, CA, United Sates).
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bioRxiv - Genomics 2024Quote: ... For each pool 16 GB (1 GB per sample) of 150 bp paired-end sequencing was performed on the Illumina NovaSeq 6000 platform (Illumina Inc., San Diego, CA, USA) by BaseClear B.V ...
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bioRxiv - Pathology 2024Quote: ... A detailed description of the database and how it is maintained has been published elsewhere.47 BioVU participant DNA samples were genotyped on a custom Illumina Multi-Ethnic Genotyping Array (MEGA-ex; Illumina Inc., San Diego, CA, USA). Quality control included excluding samples or variants with missingness rates above 2% ...
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bioRxiv - Neuroscience 2024Quote: ... sequencing was run in the rapid run flow cell and paired-end sequenced (read 1 – 26 bp, read 2 – 100 bp) on a HiSeq 1500 (Illumina, San Diego, CA 92122 USA). To minimize batch effects ...
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bioRxiv - Microbiology 2024Quote: ... and library sequencing was performed using either the HiSeq4000 (single-end, 50bp) or the NovaSeq6000 (single-end, 100 bp) Illumina (Illumina, Inc., San Diego, CA, USA) platform ...
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bioRxiv - Microbiology 2024Quote: ... cDNA libraries were multiplexed and clustered in one lane of a flow cell for sequencing on a MiSeq® System (Illumina, San Diego, CA, U.S.A.) with 2 × 300 bp paired-end (PE ...
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bioRxiv - Microbiology 2024Quote: ... The samples were diluted to obtain a concentration of 100–500 ng and used for library preparation with the Illumina DNA Prep kit (Illumina Inc., San Diego, CA, USA) according to the manufacturer’s protocol ...
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bioRxiv - Plant Biology 2024Quote: ... The sequencing of the libraries was conducted on Illumina NovaSeq instrument with 150 bp paired-end reads on NovaSeq S1 flowcell (Illumina Inc., San Diego, CA, USA) at the Centre of Plant Structural and Functional Genomics in Olomouc ...
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bioRxiv - Genomics 2024Quote: ... DNA extracted from venous blood underwent whole-genome sequencing using the Illumina TruSeq DNA PCR-Free Sample Preparation kit (Illumina Inc., San Diego, CA, USA) and Illumina HiSeq 2000 or HiSeq X sequencer ...
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bioRxiv - Cancer Biology 2024Quote: ... The generated barcoded libraries containing fragments of approximately 300 bp (paired-end) were subjected to sequencing on the Illumina® NovaSeq™ 6000 platform (Illumina, San Diego, CA). An average of 52.2 million paired-end reads were generated for each sample (Table S4) ...
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bioRxiv - Evolutionary Biology 2024Quote: ... the libraries were pooled equimolarly and 150 bp paired-end sequencing was performed by Novogene (Cambridge, UK) on the Illumina NovaSeq 6000 (Illumina Inc., San Diego, CA, USA) platform.
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bioRxiv - Evolutionary Biology 2020Quote: ... modified with 5’-overhangs designed to match the Illumina sequencing adapters and molecular identifiers (MIDs) of the Nextera® XT v2 Index Kit (Illumina Inc., San Diego, CA, USA). The second library included eight technical duplicates ...
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bioRxiv - Developmental Biology 2021Quote: ... We assessed the quality of RNA using fragment analysis to obtain RNA integrity number (RIN) before proceeding with Library preparation (NEBNext® Ultra™ RNA Library Prep Kit, Illumina, San Diego, CA, USA). Each sample was sequenced in Illumina HiSeq 2000 (Single read ...
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bioRxiv - Microbiology 2022Quote: The 16S and ITS libraries were prepared by the sequencing facility using the Illumina TruSeq≡Nano DNA Library Prep Kit (Illumina, Inc., San Diego, CA, United States), llumina MiSeq was run using a v2 Standard sequencing format with paired end reads (2 x 250 bp) ...
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bioRxiv - Molecular Biology 2021Quote: ... DNA quality control was performed in a fragment analyzer and sequencing libraries were constructed using a Nextera DNA Flex kit (now renamed to Illumina DNA Prep, Illumina, San Diego, CA) and 2×150 BP paired-end sequencing was performed in an Illumina NextSeq500 ...
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bioRxiv - Genomics 2020Quote: A total of 720 metagenomic libraries were prepared using Illumina-specific Nextera DNA transposase adapters and a Tagment DNA Enzyme and Buffer Kit (Illumina, San Diego, CA, cat. no. 20034197) (modified from Baym et al ...
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bioRxiv - Genomics 2021Quote: ... all 923 genotypes from CCLONES_real was phenotypically characterized in three replicated studies and was genotyped using an Illumina Infinium assay (Illumina, San Diego, CA; Eckert et al. 2010) with 7,216 SNPs ...
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bioRxiv - Cancer Biology 2021Quote: ... Whole-genome sequencing and library preparations for tumors and matched germline controls were performed according to the manufacturer’s instructions (Illumina, San Diego, CA, USA or NEBNext, NEB). The quality of the libraries was assessed using a Bioanalyzer (Agilent ...
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bioRxiv - Microbiology 2020Quote: ... A second PCR was performed to attach dual indices and Illumina® sequencing adapters using the Nextera XT Index kit (Illumina®; San Diego, CA, USA). The conditions of this PCR included ...
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bioRxiv - Cancer Biology 2021Quote: DNA methylation profiling of all PanNEN cohort samples was performed with 200–500ng of DNA using the Infinium® MethylationEPIC BeadChip array (850K; Illumina, Inc., San Diego, CA, USA) according to the protocols provided by the manufacturer.
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bioRxiv - Evolutionary Biology 2021Quote: ... with different insert sizes were prepared according to the Illumina protocol and subsequently sequenced on the Illumina® HiSeq platform (Illumina Inc., San Diego, CA, USA).
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bioRxiv - Molecular Biology 2022Quote: ... The final libraries and PhiX Control were quantified using qPCR before the Phase 1 library was sequenced at 50 pM with 10% PhiX Control and the Phase 2 library was sequenced at 60 pM with 10% PhiX Control on an Illumina® iSeq™ 100 using iSeq™ 100 i1 Reagent v2 (300-cycle) (Illumina Inc., CA, USA).
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bioRxiv - Plant Biology 2022Quote: ... The dual index sequencing library was prepared using a Nextera™ XT DNA Sample Preparation Kit and Nextera™ XT Index Kit (Illumina, San Diego, CA, USA), both according to the manufacturers’ instructions ...
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bioRxiv - Microbiology 2024Quote: ... V3–V4 region of the 16S rRNA gene were amplified using the primer set 341F– 785R (Klindworth et al. 2013) and sequenced using Illumina MiSeq 2 x 300 bp (Illumina Inc., San Diego, CA, United States). Demultiplexed and adapter clipped reads obtained from LGC Genomics were processed as mixed ones ...
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bioRxiv - Microbiology 2023Quote: ... with the standard protocol (high range curve – half area plate) and pooled in similar concentrations before sequencing on the Illumina MiSeq platform (Illumina, Inc., San Diego, CA, United States) using 2 × 300 cycles PE v3 chemistry ...