Labshake search
Citations for Illumina :
4401 - 4450 of 4662 citations for Genz 644282 CAS 529488 28 6 99% since 2020
Citations are collected from bioRxiv only, the total number of publications could be much larger.
-
bioRxiv - Plant Biology 2023Quote: ... The final 9pM library was sequenced on an Illumina MiSeq platform using Reagent Kit v3 (2 x 300 cycles; Illumina, San Diego, CA, USA), following manufacturer’s instructions.
-
bioRxiv - Zoology 2024Quote: ... the samples and negative controls were pooled and subjected to sequencing on the NextSeq 2000 platform (2 × 100 cycles) (Illumina, San Diego, CA, USA).
-
bioRxiv - Neuroscience 2024Quote: ... and libraries were constructed by using 600 ng of total RNA from each sample and utilizing a TruSeqV2 kit from Illumina (Illumina, San Diego, CA) following the manufacturer’s suggested protocol ...
-
bioRxiv - Microbiology 2023Quote: ... Illumina TruSeq SBS v4 reagent kit (300 cycles) was used to generate paired-end 150 bp reads using the Illumina HiSeq platform (Illumina, San Diego CA, USA). Initial quality check was done with FastQC (v0.11.6 ...
-
bioRxiv - Microbiology 2023Quote: ... a sequencing library was generated from 1 ng of the resulting SAG DNA with the NexteraXT library preparation kit (Illumina, San Diego, CA, USA) and the library was then sequenced on an Illumina MiSeq instrument (2×300 bp) ...
-
bioRxiv - Microbiology 2023Quote: Phage DNA was subjected to Illumina sequencing for dsDNA by paired-end library preparation with the Nextera XT DNA Library Preparation Kit (Illumina, San Diego, CA, USA) as recommended by the manufacturer ...
-
bioRxiv - Microbiology 2023Quote: ... Illumina shotgun libraries were prepared using the Nextera XT DNA Sample Preparation Kit and subsequently sequenced on a MiSeq system with the reagent kit v3 with 600 cycles (Illumina, San Diego, CA, USA) as recommended by the manufacturer ...
-
bioRxiv - Cancer Biology 2023Quote: Purified RNA was used for preparation of the sequencing library by using the TruSeq Stranded mRNA Library Prep Kit (Illumina, San Diego, CA, USA) in accordance with the manufacturer’s instructions ...
-
bioRxiv - Cancer Biology 2023Quote: The purified RNA was used for the preparation of the sequencing library by TruSeq Stranded mRNA Library Prep Kit (Illumina, San Diego, CA, USA) following the manufacturer’s recommendations ...
-
bioRxiv - Cancer Biology 2023Quote: ... and a total of 10 ng of RNA per sample were subjected to RNA sequencing using a version of the prime-seq protocol (51) Illumina paired end sequencing was performed on an HiSeq 1500 (Illumina, San Diego, CA, USA) instrument ...
-
bioRxiv - Neuroscience 2023Quote: ... Approximately 1 Dg of total RNA was used to prepare small RNA library according to the protocol of TruSeq Small RNA Sample Prep Kits (Illumina, San Diego, CA, USA) and single-end sequencing 50bp on an Illumina Hiseq 2500 (following the vendor’s recommended protocol ...
-
bioRxiv - Microbiology 2023Quote: ... was predominantly carried out using a 2x 150bp (paired end) sequencing protocol for the Illumina the NovaSeq 6000 Sequencing System (Illumina, San Diego, CA, USA) according to the manufacturer’s manual ...
-
bioRxiv - Cancer Biology 2023Quote: ... RNA sequencing libraries were generated according to the manufacturer’s instructions for the TruSeq totalRNA with RiboZero Human/Mouse/Rat Gold (Illumina, San Diego, CA, United States). Sequencing was then performed on the NovaSeq6000 (Illumina ...
-
bioRxiv - Microbiology 2023Quote: ... 16S rRNA amplicons were generated using B969F and BA1406R primers and paired-end sequenced (250 bp) with MiSeq v2 chemistry (Illumina, San Diego, CA, USA) at the Integrated Microbiome Resource facility at Dalhousie University (Halifax ...
-
bioRxiv - Plant Biology 2023Quote: ... RADseq library was prepared with HindIII and NlaIII restriction enzymes for DNA digestion and sequenced using Illumina NovaSeq 6000 (Illumina, San Diego, CA, USA). Raw sequence data is available on NCBI SRA under the project number PRJNA997794 ...
-
bioRxiv - Microbiology 2023Quote: ... Libraries for the run at NMBU and the first run at SLU (August 2021) were prepared using the Nextera XT DNA Library Preparation kit (Illumina, San Diego, CA, USA) and paired-end 250 bp sequenced on an Illumina MiSeq ...
-
bioRxiv - Microbiology 2023Quote: ... Illumina shotgun libraries were prepared using the Nextera XT DNA Sample Preparation Kit and subsequently sequenced on a MiSeq system with the reagent kit v3 with 600 cycles (Illumina, San Diego, CA, USA) as recommended by the manufacturer ...
-
bioRxiv - Zoology 2023Quote: ... were used for kinship analysis and pedigree mapping.17,18 Files were generated using high coverage (20-30X) whole genome short read (150bp) sequencing data generated using the sequence by synthesis approach (Illumina inc., San Diego, CA) and aligned to the NCBI35 (hg17 ...
-
bioRxiv - Genetics 2024Quote: ... The raw genotyping data deriving from the Brassica Illumina infinium arrays or from the KASPar technology were analyzed using either the GenomeStudio v.2011.1 (Illumina Inc., San Diego, CA, USA) or the Fluidigm SNP Genotyping Analysis v4.1.2 softwares (Wang et al ...
-
bioRxiv - Plant Biology 2023Quote: ... using the Strand specific 20xTruseq RNA library preparation (paired end, read length 150 bp) as recommended by the manufacturer (Illumina, San Diego, CA, USA). All samples were sequenced in two repeated lanes on the HiSeq4000 ...
-
bioRxiv - Cancer Biology 2023Quote: cDNA were used in the library preparation using Ovation® Ultralow Library Systems (NuGEN) and samples were sequenced using an Illumina HiSeq 2000 sequencer (Illumina, San Diego, CA) in high output mode across 9 lanes of 50bppaired-end sequencing ...
-
bioRxiv - Genetics 2024Quote: ... Bisulfite-converted DNA samples were randomly assigned to a chip well on the Infinium Human Methylation EPIC v2 BeadChip (Illumina, Inc., San Diego, CA) or in the Human Imprintome array BeadChip (Illumina ...
-
bioRxiv - Microbiology 2024Quote: ... Between 3-5 µg of total RNA from each sample was used for mRNA enrichment with the RiboZero Bacterial rRNA Removal Kit (Illumina, San Diego, CA, USA), and the quality and quantity of enriched mRNA was assessed as described above for total RNA ...
-
bioRxiv - Microbiology 2023Quote: ... Illumina shotgun libraries were prepared using the Nextera XT DNA Sample Preparation Kit and subsequently sequenced on a MiSeq system with the reagent kit v3 with 600 cycles (Illumina, San Diego, CA, USA) as recommended by the manufacturer ...
-
bioRxiv - Microbiology 2023Quote: ... The DNA libraries were then prepared at the Institut Pasteur Mutualized Platform for Microbiology (P2M) with the Nextera XT kit (Illumina, San Diego, CA, USA) and sequencing was performed with the NextSeq 500 system (Illumina) ...
-
bioRxiv - Microbiology 2022Quote: ... Poly-A selected strand specific library construction and paired-end sequencing (2x 125 bp on a HiSeq 2500 using v4 chemistry; Illumina, San Diego, CA, USA) was performed at the VBCF NGS Unit (Vienna ...
-
bioRxiv - Immunology 2022Quote: ... variable regions V3 to V4 of the bacterial 16S ribosomal RNA gene were amplified by limited cycle PCR and subjected to the Illumina 16S metagenomic sequencing library preparation workflow according to the manufacturer’s recommendations (Illumina Inc., San Diego, CA, USA). The obtained DNA libraries were quantified ...
-
bioRxiv - Cancer Biology 2022Quote: ... and sequenced on the Illumina NextSeq 2000 sequencer with the P3-200 cycle reagent kit in order to generate approximately 50M million 100-base read pairs per sample (Illumina, Inc., San Diego, CA).
-
bioRxiv - Cancer Biology 2022Quote: ... Libraries were pooled and sequenced single-end (1×75) on an Illumina NextSeq 500 using the High output V2 kit (Illumina Inc., San Diego CA) at a sequencing depth of 23-31 million reads ...
-
bioRxiv - Cell Biology 2022Quote: ... as described in the section “Quantitative real-time PCR.” The library was prepared using the TruSeq stranded mRNA sample prep kit (Illumina, San Diego, CA, USA) according to the manufacturer’s instructions and sequenced on an Illumina NovaSeq 6000 platform in the 101 bp single-end mode ...
-
bioRxiv - Genomics 2022Quote: ... and 2 x 300 bp paired-end sequence reads with mean coverage of 100x were generated on Miseq platform (Illumina, San Diego, CA, USA). De novo assembly was performed with SPAdes v3.9.0 using k-mers of 101 ...
-
bioRxiv - Genomics 2022Quote: ... Short-read sequencing data for error correction was generated from the same individual using the TruSeq Nano DNA Low Throughput Library Prep Kit and IDT for Illumina – TruSeq DNA UD Indexes (Illumina, San Diego, CA, USA). Standard protocols were followed to yield a paired library with a 350 bp insert size and 50 bp standard deviation ...
-
bioRxiv - Genomics 2022Quote: ... A total of 100 ng of RNA was used as input to the mRNA sequencing library prep kit (TruSeq RNA Access Library Prep Kit by Illumina, San Diego, CA, USA) according to the protocols of the manufacturer ...
-
bioRxiv - Genomics 2022Quote: ... The concentration of amplified cDNA was measured with Qubit and 1 ng was used as input for Nextera XT (Illumina, San Diego, CA, USA) library preparation using New P5 SMART PCR oligo and Nextera index oligos ...
-
bioRxiv - Genomics 2022Quote: ... 2 μg of Rohu-1 genomic DNA was used with an Illumina TruSeq DNA PCR-free Library Prep Kit (Illumina, San Diego, CA, USA) to create an Illumina sequencing library ...
-
bioRxiv - Genetics 2022Quote: ... were captured by xGen Exome Research Panel v2 (Integrated DNA Technologies, Coralville, Iowa, USA) and sequenced with Novaseq 6000 (Illumina, San Diego, CA, USA) as 150 bp paired-end reads ...
-
bioRxiv - Genomics 2022Quote: ... the sequencing was performed with paired-end sequencing of 150nt each end on one lane of Illumina NovaSeq 6000 (Illumina, San Diego, CA, USA) per sample ...
-
bioRxiv - Evolutionary Biology 2022Quote: ... was used for cDNA synthesis and purification using a low-throughput protocol with a TruSeq Stranded RNA LT Kit (Illumina, San Diego, CA, USA). A half-scale reaction of the standard protocol was used for library preparation ...
-
bioRxiv - Plant Biology 2022Quote: Pair-end library preparation for MiSeq sequencing was conducted using the two-step tailed PCR method described on Illumina (Illumina, San Diego, CA, USA). We used the following primer pairs to amplify partial sequences of the 16S rRNA gene:
-
bioRxiv - Plant Biology 2022Quote: ... We prepare 12 cDNA libraries (3 individuals □ 2 sampling times (dawn and dusk) □ 2 localities) using the TruSeq RNA-seq library prep kit from Illumina (Illumina, Inc., CA, USA) according to manufacturer’s instructions ...
-
bioRxiv - Microbiology 2022Quote: ... with up to 100 ng DNA input following the manufacturers protocol using internal dual-index 8 bp barcodes with Nextera® adapters (Illumina, San Diego, CA). All libraries were quantified with TapeStation®(Agilent Technologies ...
-
bioRxiv - Microbiology 2022Quote: ... A total of 21 isolates were selected (one representative from each cluster) for whole-genome sequencing using the Illumina NovaSeq 6000 (Illumina, San Diego, CA, USA) platform ...
-
bioRxiv - Microbiology 2022Quote: ... These programs cover “Tagment Genomic DNA” to “Amplify DNA” in the protocol (Mantis-Nextera DNA Flex library prep protocol, Illumina, San Diego, CA, USA) and “Clean Up Libraries” in the protocol (Epmotion - Library Clean Up protocol ...
-
bioRxiv - Molecular Biology 2022Quote: ... Libraries were prepared from purified RNA (∼1 μg) using Illumina TruSeq standard mRNA library preparation kit as per manufacturer protocol (Illumina Inc., San Diego, CA). Briefly ...
-
bioRxiv - Physiology 2022Quote: ... and used to construct stranded RNA-seq libraries from polyA-selected total liver RNA using an Illumina stranded TruSeq mRNA Prep Kit (Illumina, San Diego, CA, USA). Three pooled RNA samples were prepared for each of the four treatment groups ...
-
bioRxiv - Microbiology 2022Quote: ... Purified PCR products were fragmented and tagged with the indexed adaptors using the Nextera DNA XT Sample Preparation Kit (Illumina, San Diego, CA, USA). The sequence library was quantified by using the Quant-iT PicoGreen dsDNA Assay Kit (Invitrogen) ...
-
bioRxiv - Microbiology 2022Quote: ... All samples showed a high RNA quality (RNQ>8) and were sequenced using an Illumina® HiSeq 3000 sequencer (Illumina, San Diego, CA, USA). Reads were mapped to the Sscrofa11.1 assembly of the Swine Genome Sequencing Consortium (SGSC ...
-
bioRxiv - Microbiology 2022Quote: ... Libraries were pooled and sequenced (single-end 75 bp reads) on Illumina NextSeq 500 using High Output V2 Kit (Illumina, San Diego, CA, USA). Sequencing data were analyzed as described previously (70 ...
-
bioRxiv - Genomics 2022Quote: ... 500 ng per sample of isolated DNA was bisulfite converted and hybridized with the Infinium Mouse Methylation BeadChip (Illumina Inc., San Diego, CA, USA), from 24 C57BL/6 mice (all female ...
-
bioRxiv - Microbiology 2022Quote: ... Sequence reads were obtained from the Illumina NovaSeq platform based on 2 × 250 bp cycles and the NovaSeq 6000 SP Reagent Kit (500 cycles, Illumina, San Diego CA, USA). Further analysis was performed using the QIIME 2 standard pipeline (Version 2020.11)45.