Labshake search
Citations for Illumina :
4451 - 4500 of 5691 citations for TD 5108 CAS 866933 46 2 99% since 2020
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Genomics 2022Quote: ... The construction of libraries was performed with Illumina preparation kits (Table S1) following the manufacturer’s recommendations (Illumina Inc., San Diego, CA, USA). The Nextera DNA Prep kit and Illumina DNA Prep were used for WGS ...
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bioRxiv - Genetics 2022Quote: ... gDNA of 293T cells with or without transfection was tested by WGS using the Illumina NovaSeq platform (Illumina, San Diego, CA, USA).
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bioRxiv - Microbiology 2022Quote: ... DNA libraries were prepared according to the manufacturer’s protocol using the Nextera DNA Flex Library Preparation Kit (Illumina, San Diego, CA, USA). Library preparation and bead clean-up was undertaken with the Mantis® Liquid Handler (Formulatrix ...
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bioRxiv - Genomics 2022Quote: ... Libraries were sequenced on the Illumina NextSeq500 Desktop sequencer v2 for 75 bp single-end reads (Illumina Inc., San Diego, CA, USA) at the University of Toronto Center of Analysis of Genome Evolution and Function (CAGEF) ...
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bioRxiv - Molecular Biology 2022Quote: ... Libraries were prepared according to the Illumina TruSeq RNA protocol and sequenced on an Illumina HiSeq2500 machine (Illumina, Inc., San Diego, CA) at the Genome Center of the Max Planck Institute for Plant Breeding Research Cologne.
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bioRxiv - Immunology 2022Quote: ... Amplified (1 ng) cDNA was used to generate barcoded libraries using the Nextera XT DNA library preparation kit (Illumina, San Diego, CA). The size of the libraries was checked using the Agilent 2100 Bioanalyzer High Sensitivity DNA chip and their concentration was determined using the Qubit® fluorometer (ThermoFisher Scientific ...
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bioRxiv - Microbiology 2022Quote: We prepared cDNA sequencing libraries for the transcriptome samples using the TruSeq RNA Library Prep Kit v2 (Illumina, San Diego, CA, USA). Paired-end fragment reads were generated on an Illumina NextSeq sequencer using TG NextSeq® 500/550 High Output Kit v2 (300 cycles) ...
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bioRxiv - Microbiology 2022Quote: ... They were collected and their genomic DNA was pooled and analyzed on an Illumina MiSeq bench-top sequencer (Illumina, San Diego, CA). Insertion sites (which included 35% of TA sites ...
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bioRxiv - Molecular Biology 2022Quote: ... After quality control and equimolar pooling paired-end sequencing of the libraries was performed on a NextSeq (Illumina, San Diego, CA, USA) instrument with NextSeq 500 High Output v2 Kit to generate 2×150 read lengths according to manufacturer’s instructions ...
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bioRxiv - Plant Biology 2022Quote: Libraries were pooled and sequenced using the PE100 bp protocol on a single lane of Hiseq 2000 (Illumina, Inc., San Diego, CA) at the Vincent J ...
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bioRxiv - Plant Biology 2022Quote: ... Five micrograms of total RNA from each sample were used to construct an RNA-Seq library by using the TruSeq RNA Sample Preparation Kit according to the manufacturer’s instructions (Illumina, San Diego, CA). A total of 72 libraries (Table S2 ...
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bioRxiv - Neuroscience 2022Quote: ... RNA-seq and ChIP-seq libraries were single-end sequenced for 76 cycles on an Illumina HiSeq 4000 (Illumina, San Diego, CA) according to manufacturer’s instruction.
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bioRxiv - Microbiology 2023Quote: ... Whole genome sequencing was performed by the Microbial Genome Sequencing Center (MIGS, Pittsburgh, PA) using Illumina NextSeq 2000 (Illumina, San Diego, CA). Reads were aligned to the B ...
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bioRxiv - Cancer Biology 2023Quote: ... Sequencing was performed using a NextSeq 500/550 High Output Kit v2.5 (75 Cycles) kit (cat# 20024906) on an Illumina Sequencing NextSeq 550 System ([RRID: SCR_016381], Illumina, San Diego, CA, USA). The initial annotated dataset went through quality control (QC ...
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bioRxiv - Cancer Biology 2022Quote: ... High-throughput sequencing was performed with 150-bp paired-end reads on a MiSeq or NextSeq platform (Illumina, San Diego, CA, USA) for each pooled sample according to the manufacturers’ protocols.
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bioRxiv - Microbiology 2023Quote: ... DNA was quantified using a Nanodrop spectrophotometer and high-throughput genome sequencing was performed on a MiSeq (Illumina, San Diego, CA, USA), using the Nextera XT Library Preparation Kit with standard protocols involving fragmentation of 2 μg genomic DNA by acoustic shearing to enrich for 600 bp fragments ...
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bioRxiv - Genomics 2022Quote: ... libraries were constructed using the XT Index Kit (Nextera®) and sequenced using HiSeq or NovoSeq platform (Illumina, San Diego, CA, USA) to produce 2 × 250 bp paired-end reads ...
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bioRxiv - Immunology 2023Quote: ... 1.25 µg of RNA was used for sequencing libraries prepared with TruSeq® Stranded mRNA Library Prep (Illumina, San Diego, CA, USA). Samples were randomized based on clinical parameters of patients (age ...
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bioRxiv - Cell Biology 2023Quote: ... at least 50 ng/μl of purified RNA for each replicate was sent to Novogene (Sacramento, CA) for cDNA library preparation and Illumina sequencing (Illumina NovaSeq 6000). For Nanopore sequencing ...
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Lysyl oxidase regulates epithelial differentiation and barrier integrity in eosinophilic esophagitisbioRxiv - Cell Biology 2023Quote: ... Sequencing libraries were constructed from total RNA (1 μg) using a TruSeq Stranded mRNA Library Prep (Illumina Inc., San Diego, CA, USA). RNA sequencing was performed on Illumina HiSeq2000 platform ...
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bioRxiv - Developmental Biology 2023Quote: ... Paired-end sequencing of each 150 bp end of cDNA was performed with the Hiseq2000 sequencing system (Illumina, San Diego, CA, USA). The reads were mapped to the reference transcript database (PLEWA04_ORF.cds.fa10 ...
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bioRxiv - Genetics 2024Quote: ... the library was analyzed for quality by the Agilent Bioanalyzer 2100 system and then sequenced on the HiSeq2500 platform (Illumina, CA, USA).
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bioRxiv - Genomics 2024Quote: ... Genotypes were called for SNPs matched to dbSNP v151 51 and for which valid calls were made in >98% of participants using GenomeStudio v2.0 (Illumina, San Diego, CA). Additional SNPs were imputed using the IMPUTE2 software suite G352 and the 1000 Genomes Phase 3 reference panel53 ...
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bioRxiv - Microbiology 2024Quote: ... RiboZero: rRNA was removed from 10 ng of total RNA using Ribo-Zero(TM) rRNA Removal Kit (Illumina, San Diego, CA, USA). Stranded cDNA libraries were generated using the Illumina Truseq Stranded mRNA Library Prep kit ...
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bioRxiv - Bioengineering 2024Quote: ... Demultiplexing was performed using Illumina Bcl2fastq v2.19.1.403 software and subjected to RNA sequencing (Illumina NextSeq 500, Illumina, Inc. San Diego, CA, USA). Sequence data were analyzed using the RaNA-seq cloud platform.
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bioRxiv - Genomics 2024Quote: ... The libraries were constructed using 100 ng of genomic DNA using the Illumina® DNA Prep (M) Tagmentation (Illumina, San Diego, CA), according to manufacturer’s instructions ...
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bioRxiv - Molecular Biology 2024Quote: ... purified and ligated to 3′ and 5′ RNA adapters derived from TruSeq Small RNA Library Preparation Kit (Illumina, San Diego, CA, USA). Small RNA libraries were created using TruSeq Small RNA Library Preparation Kit (Illumina ...
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bioRxiv - Microbiology 2024Quote: ... Sequencing libraries were prepared using the Nextera XT protocol and sequenced on an Illumina MiSeq instrument (Illumina Inc., San Diego, CA, USA) with 2×151 bp paired-end reads.
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bioRxiv - Physiology 2024Quote: All DNA methylation experiments were performed in accordance with Illumina manufacturer instructions for the Infinium Methylation EPIC 850K BeadChip Array (Illumina, CA, USA). Methods for the amplification ...
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bioRxiv - Molecular Biology 2024Quote: ... Small RNA libraries were generated using NEXTFlex Small RNA Library Prep Kit v3 (Cat #NOVA-5132–06) and sequenced on the NextSeq 500 system (Illumina, CA, USA) by the Genomic Unit at Genyo ...
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bioRxiv - Developmental Biology 2024Quote: ... Single cell libraries were prepared by the University of Michigan Advanced Genomics Core and sequencing was performed using the 10X Genomics Chromium platform using manufacturer’s protocol for 10x Single Cell Expression 3’ and sequenced on the NovaSeq (S4) 300 cycle (Illumina, San Diego, CA). Sequencing outputs were demultiplexed using 10x Genomics Cell Ranger 7.1.0 software and FASTQ files were aligned to the Genome Reference Consortium Mouse Build 38 ...
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bioRxiv - Cell Biology 2024Quote: ... The final library is diluted to 1,5 nM prior to denaturation for analysis on a NovaSeq S1 100 cycles run (Illumina Inc., CA, USA), generating on average 7 million 2×50bp reads ...
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bioRxiv - Systems Biology 2024Quote: ... Sequencing library preparation was conducted per the guidelines provided in the MiSeq™ Reagent Kit Preparation Guide (Illumina, San Diego, CA, USA) as outlined by (Caporaso et al. ...
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bioRxiv - Plant Biology 2024Quote: ... RNA libraries for sequencing were prepared using TruSeq Stranded mRNA sample prep kit with 96 dual indexes (Illumina, San Diego, CA, USA) according to the manufacturer’s instructions with the following changes ...
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bioRxiv - Microbiology 2024Quote: Genomic libraries of isolates from the CV region outbreak were prepared using the Illumina DNA Prep kit (Illumina, San Diego, CA, USA) and sequenced on a Nextseq instrument generating 2x150bp paired-end sequencing reads following the manufacturer’s instructions.
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bioRxiv - Microbiology 2024Quote: ... Shotgun sequencing of DNA was performed on the Illumina® HiSeq™ platform (2000 PE 100, Illumina, Inc., San Diego, CA, USA) at the University of Michigan DNA Sequencing Core.
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bioRxiv - Immunology 2024Quote: ... Libraries were prepared using the TruSeq Stranded mRNA Sample Prep Kit v2 according to the manufacturer’s protocol (Illumina, San Diego, CA, USA). Briefly ...
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bioRxiv - Microbiology 2024Quote: ... all extracted RNA was used in the library preparation following Illumina’s TruSeq -small-RNA-sample preparation protocols (Illumina, San Diego, CA, U.S.A.). The D.N.A ...
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bioRxiv - Microbiology 2024Quote: ... 100 bp paired end sequencing was performed on Illumina NovaSeq 6000 platform using S4 flow cell (Illumina Inc., San Diego, CA, USA).
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bioRxiv - Microbiology 2024Quote: Indexed sequencing libraries were generated from 1 ng genomic DNA using Nextera XT DNA Library Preparation Kit (Illumina, San Diego, CA, USA) following the protocol of the manufacturer ...
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bioRxiv - Genetics 2024Quote: Libraries were sequenced at between 40,000 and 50,000 fragment reads per cell following Illumina’s standard protocol using the Illumina cBot and HiSeq 3000/4000 PE Cluster Kit (Illumina, San Diego, CA). The flow cells were sequenced as 100 × 2 paired end reads on an Illumina HiSeq 4000 HD using HiSeq 3000 / 4000 sequencing kit and HCS v3.4.0.38 collection software ...
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bioRxiv - Plant Biology 2024Quote: ... and were sequenced on an S4 flow cell in paired-end mode on an Illumina NovaSeq 6000 (Illumina, San Diego, CA, USA), generating ∼40-50 million read pairs of length 150 nt per tissue type (Table S1) ...
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bioRxiv - Neuroscience 2024Quote: ... protocol with ribosomal depletion and sequenced as 100 bp single- end reads on a Novaseq 6000 sequencer (Illumina, San Diego, CA, USA).
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bioRxiv - Neuroscience 2024Quote: ... Reads of 100 bases were generated using the TruSeq SBS chemistry on an Illumina HiSeq 4000 sequencer (Illumina, San Diego, CA, USA). To assess sequencing quality ...
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bioRxiv - Pharmacology and Toxicology 2024Quote: Sequencing was performed to 40 million reads per sample (150 paired-end) on Illumina NovaSeq 6000 (Illumina, San Diego, CA, United States).
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bioRxiv - Pathology 2024Quote: ... Gene dosage of the SNCA locus on chromosome 4 was determined by inspecting the B allele frequency and LogR Ratio plots (Extended data suppl-Fig. 3) from Neurobooster array data (155 variants) using GenomeStudio (Illumina Inc., CA).
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bioRxiv - Molecular Biology 2024Quote: ... Paired-end sequencing (2×75 cycles) was performed on an Illumina NextSeq 550 sequencer using a NextSeq 500/550 High Output Kit v2.5 (Illumina, San Diego, CA).
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bioRxiv - Physiology 2024Quote: ... high-sensitivity spectrofluorometric measurement was poly-A selected and reverse transcribed using Illumina’s TruSeq stranded mRNA library preparation kit (Cat #20020595, Illumina, San Diego, CA). Each sample was fitted with one of 96 adapters containing a different 8 base molecular barcode for high level multiplexing ...
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bioRxiv - Genomics 2024Quote: ... The 16S rRNA amplicons of the V3-V4 regions were generated as described in the 16S Metagenomics Sequencing Library Preparation user’s guide from Illumina (Illumina, CA, USA). All reactions were amplified under the following conditions ...
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bioRxiv - Genetics 2024Quote: ... and 160 ng of the conversion product was used for genome-wide DNA methylation evaluation at over 485,000 CpG sites using the HM450K or over 850,000 CpG sites using the EPIC (Illumina, San Diego, CA, USA). Bisulfite-converted DNA from each sample was randomized across BeadChip arrays ...