Labshake search
Citations for Illumina :
4251 - 4300 of 5691 citations for TD 5108 CAS 866933 46 2 99% since 2020
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Immunology 2024Quote: ... and sequenced as 2 × 75 base reads on the NextSeq instrument using three high output chemistry kits (Illumina). Raw fastq reads were trimmed of Illumina adapter sequences using cutadapt (version 1.12) ...
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bioRxiv - Genomics 2024Quote: ... Pair-end sequencing (2*150 bp) of each sample was performed on the Illumina HiSeq platform (Illumina, USA).
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bioRxiv - Microbiology 2024Quote: ... and sequenced using a 2 × 150 nucleotide paired-end strategy (Illumina NextSeq 500, Illumina, San Diego, California, USA).
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bioRxiv - Cell Biology 2020Quote: ... and samples with an RNA Integrity Number (RIN) greater than 8.0 were used to generate RNA sequencing libraries using the TruSeq Stranded mRNA Sample Prep (Illumina, San Diego, CA). Samples were processed following manufacturer’s instructions ...
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bioRxiv - Genetics 2021Quote: ... Samtools mpileup v1.3 [54] was used to create a pileup of the reads at 641,163 SNP loci that were also genotyped on the 777k BovineHD BeadChip (Illumina, San Diego, CA) and are segregating in Australia’s northern beef population.
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bioRxiv - Genetics 2021Quote: ... Both waves were genotyped by the NIH Center for Inherited Disease Research (CIDR; Johns Hopkins University) using the HumanOmni2.5 arrays from Illumina (San Diego, CA). Raw data from both phases were clustered and called together ...
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bioRxiv - Genomics 2021Quote: ... Libraries were multiplexed and sequenced on an Illumina HiSeq 2500 for 50 bp single reads according to the manufacturer’s instructions (Illumina, San Diego, CA). Samples were first sequenced until ∼2M reads and continued to a total of ∼20M reads only when the fraction of reads that passed the LpnPI filter (explained below ...
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bioRxiv - Microbiology 2021Quote: ... The final sample pool was diluted to a 10nM concentration and sequenced on an Illumina HiSeq 2500 (Illumina, San Diego, CA, USA) at the Harvard University Bauer Core Facility ...
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bioRxiv - Molecular Biology 2021Quote: ... Barcoded treatment and control replicate libraries were hybridized across four lanes of two S4 flow cells for cBot (Illumina, San Diego, CA) cluster generation and sequencing (paired-end ...
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bioRxiv - Molecular Biology 2021Quote: Pooled equimolar libraries were sequenced at Canada’s Michael Smith Genome Sciences Centre (BC Cancer Research, Vancouver, BC, Canada, https://www.bcgsc.ca) using the Illumina Hiseq (Illumina Inc., San Diego, CA). The libraries were sequenced as a 150 bp paired end run ...
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bioRxiv - Evolutionary Biology 2021Quote: Libraries for each individual starling were constructed using a TruSeq DNA PCR-free High Throughput Library Prep Kit (Illumina, San Diego, CA). All individuals passed the initial quality check with FASTQC (Babraham Bioinformatics ...
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bioRxiv - Evolutionary Biology 2020Quote: ... Libraries were diluted from 26.2 nM (HBA1) and 33.4 nM (HBA2) to a concentration of 4 nM and pooled for sequencing on a MiSeq (Illumina, San Diego, CA).
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bioRxiv - Microbiology 2021Quote: ... The library was generated using the transposon-based Nextera™ XT Sample Preparation Kit using 15 cycles (Illumina, San Diego, CA, USA) and the concentration of DNA libraries was measured by Quant-iT™ DNA HS Assay Kit ...
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bioRxiv - Evolutionary Biology 2020Quote: ... The barcoded stranded mRNA-sequencing libraries were prepared using the Illumina TruSeq mRNA v2 sample preparation kit (Illumina, San Diego, CA, USA) with poly-A mRNA enrichment ...
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bioRxiv - Evolutionary Biology 2020Quote: ... a 91bp paired-end library was constructed and the libraries were run on an Illumina HiSeq 2000 (Illumina, San Diego, CA, USA). Clean reads were aligned to the Nasonia vitripennis genome build Nvit_2.1 (GCF_000002325.3 ...
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bioRxiv - Evolutionary Biology 2021Quote: ... We then prepared tagmentation-based whole genome libraries for low coverage sequencing by enzymatically shearing DNA diluted to approximately 2.5 ng/ul using the Illumina Tagment DNA TDE1 Enzyme and Buffer Kits (Illumina, San Diego, CA) at 55°C for 5 minutes ...
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bioRxiv - Genomics 2020Quote: ... Complementary RNA (cRNA) was synthesized and biotinylated using the Illumina™ TotalPrep™-96 RNA Amplification Kit (Illumina Inc., San Diego, CA). cRNA samples were then hybridized to HumanHT-12 v3 Expression BeadChips (Illumina ...
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bioRxiv - Microbiology 2022Quote: ... 1 ng of genomic DNA from each sample was converted to whole-genome sequencing libraries using the Nextera XT sequencing reagents according to the manufacturer’s instructions (Illumina, San Deigo CA).
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bioRxiv - Genomics 2022Quote: ... USA) from which ~500bp insert indexed sequencing libraries were generated using the Illumina TruSeq v2 Library Construction Kit (Illumina, San Diego, CA). Single-end 100-bp reads were generated from D ...
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bioRxiv - Genomics 2022Quote: ... Each library was sequenced using 151 bp paired end reads chemistry on an Illumina NovaSeq 6000 sequencer (Illumina, San Diego, CA, USA).
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bioRxiv - Genomics 2022Quote: ... sequencing was carried out on the Nichols reference strain using the Illumina NovaSeq 6000 platform following the manufacturer’s recommendations (Illumina, San Diego, CA). Sequencing of isolate CDC-SF003 and swab specimens were carried out using the MiSeq v2 (500 cycle ...
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bioRxiv - Genomics 2022Quote: ... Sequencing of isolate CDC-SF003 and swab specimens were carried out using the MiSeq v2 (500 cycle) platform following the manufacturer’s recommendations (Illumina, San Diego, CA).
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bioRxiv - Molecular Biology 2021Quote: Each library was indexed using a unique barcode for multiplexing and sequenced on the NextSeq2500 or Hiseq4000 platform (Illumina, San Diego, CA) to yield single-end 100 bp sequences ...
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bioRxiv - Genomics 2020Quote: ... The library was constructed using the Illumina TruSeq DNA Sample preparation kit according to manufacturer’s instructions (Illumina, Inc., San Diego, CA, USA). Next-generation sequencing data was obtained using the Illumina HiSeq 2000 ...
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bioRxiv - Molecular Biology 2021Quote: ... The paired-end sequencing (75 bp from each end) was performed on the Illumina NextSeq 500 platform (Illumina, San Diego, CA, USA) over four lanes.
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bioRxiv - Genomics 2020Quote: ... The resulting post-capture enriched multiplexed sequencing libraries were used in cluster formation on an Illumina cBOT (Illumina, San Diego, CA, USA) and paired-end sequencing was performed using an Illumina HiSeq 4000 following Illumina-provided protocols for 2×150bp paired-end sequencing at The National Cancer Institute Cancer Genomics Research Laboratory (CGR) ...
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bioRxiv - Immunology 2021Quote: ... The pool was titrated to 1.8 -1.9 pM and sequenced as 2 × 75 bp reads in a total of nine runs on the NextSeq 550 instrument using the high output v2.5 kit (Illumina, San Diego, CA).
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bioRxiv - Genomics 2020Quote: ... Five size-fractions were selected ranging from 470 bp to 10 kb to construct sequencing libraries following the manufacturer’s protocols (Illumina, San Diego, CA). The TruSeq DNA Sample Preparation Kit version 2 with no PCR amplification (PCR-free ...
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bioRxiv - Bioengineering 2020Quote: ... cDNA libraries were single-end sequenced in 76 cycles using a NextSeq 500 Kit v2 (FC-404-2005, Illumina, San-Diego, CA). High-throughput sequencing was performed using NextSeq500 sequencing system (Illumina ...
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bioRxiv - Molecular Biology 2020Quote: ... and pair-end sequencing (insert size = 300 bp, read length = 150 bp) was performed according to the standard protocol of Novaseq 6000 (Illumina, CA, USA). Raw sequencing reads were filtered to include only high quality reads in downstream analysis ...
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bioRxiv - Genomics 2020Quote: ... Genomic DNA was extracted from blood leukocytes for each member of the family trio and genomic libraries were prepared using 1.2 μg of DNA with the TruSeq DNA sample preparation and Exome Enrichment kit (62Mb; Illumina, San Diego, CA). Sequencing was performed by paired-end sequencing on a HiSeq2000 instrument (Illumina Inc ...
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bioRxiv - Microbiology 2020Quote: ... Library preparation with 1 ng of extracted DNA was done by applying the Nextera XT DNA Library Prep Kit according to the manufacturer’s instructions (Illumina, San Diego, CA). Libraries were subjected to whole-genome sequencing using an Illumina® MiSeq benchtop devise (Illumina ...
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bioRxiv - Genomics 2021Quote: ... Separate libraries were prepared from the two RNA pools using the TruSeq Stranded mRNA LT sample prep kit (Illumina, San Diego, CA). Libraries were run in paired-end 150-base format on both lanes of a dual flow cell in Rapid Run mode on an Illumina HiSeq 2500 System ...
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bioRxiv - Genomics 2020Quote: ... we sequenced matching tumor and normal samples from four patients using the Illumina MiSeq or NextSeq platform (Illumina, San Diego, CA, USA) (Additional File 2 ...
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bioRxiv - Genomics 2020Quote: ... 10 pM DNA library was prepared under Denature and Dilute Libraries Guide of Illumine MiSeq System with 15% PhiX spike-in control (Illumina, CA, USA) and eventually subjected to 250 bp pair-end sequencing on a MiSeq lane (Illumina ...
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bioRxiv - Genomics 2020Quote: ... the sheared PCR products were processed using a Nextera XT DNA Sample Preparation Kit according to the manufacturer’s instructions (Illumina, San Diego, CA). All the libraries were sequenced at a 2×150 bp read length on an Illumina HiSeq 2000 platform ...
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bioRxiv - Neuroscience 2020Quote: ... Detailed anatomical boundaries for each cortical region at each stage of development are provided elsewhere.[17,18] Regional tissue samples were subject to mRNA-sequencing using an Illumina Genome Analyzer IIx (Illumina, San Diego, CA) and mRNA-seq data processed using RSEQtools (v0.5).[123] Gene expression was measured as reads per kilobase of transcript per million mapped reads (RPKM) ...
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bioRxiv - Microbiology 2021Quote: ... cDNA libraries were prepared using 100 ng of total RNA according to the manufacturer’s instructions for the Illumina TruSeq Stranded Total RNA Sample Prep Kit with Ribo-Zero Gold (Illumina, San Diego, CA). The concentration and size distribution of the completed libraries were determined using an Agilent Bioanalyzer DNA 1000 chip (Santa Clara ...
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bioRxiv - Bioengineering 2020Quote: Preparation of phage dAb libraries for deep sequencing was completed following the Illumina Nextera XT amplicon sequencing protocol (Illumina, San Diego, CA). Briefly ...
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bioRxiv - Neuroscience 2020Quote: ... and 40 from each of the 10 donors) were prepared with the TruSeq Stranded mRNA kit from Illumina (San Diego, CA, USA) and sequenced on a HiSeq 4000 sequencer (Illumina ...
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bioRxiv - Neuroscience 2021Quote: ... 1 μg of high-quality RNA for each sample was used for library preparation according to the Illumina TruSeq small RNA library protocol (Illumina Inc., CA). Briefly ...
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bioRxiv - Neuroscience 2021Quote: ... Genotyping was performed using single nucleotide polymorphism (SNP) microarrays (Infinium Global Screening Array v2.4. or Infinium OmniExpress-24; Illumina, San Diego, CA). Raw genotype files were converted to PLINK-compatible files using GenomeStudio software (Illumina ...
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bioRxiv - Cancer Biology 2021Quote: ... Prepared libraries were sequenced for 76nt paired-end sequencing on HiSeq™ 4000 and NovaSeq6000™ sequencers (Illumina®, San Diego, CA).
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bioRxiv - Cancer Biology 2020Quote: ... RNA libraries were prepared using 200 ng of good quality total RNA according to the manufacturer’s instructions for the TruSeq RNA Sample Prep Kit v2 (Illumina, San Diego, CA), employing poly-A mRNA enrichment using oligo dT magnetic beads ...
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bioRxiv - Pathology 2021Quote: Genotyping was performed using single nucleotide polymorphism (SNP) microarrays (Infinium Global Screening Array v2.4. or the Infinium OmniExpress-24, Illumina, San Diego CA). Raw genotype files were converted to PLINK-compatible files using GenomeStudio software (Illumina ...
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bioRxiv - Genomics 2020Quote: Total RNA obtained from plasma was desiccated to a volume of 2.5μl for library preparation with the TruSeq Small RNA Library Prep kit (Illumina, Inc., San Diego, CA) following manufacturer’s instructions ...
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bioRxiv - Plant Biology 2021Quote: ... The 300–500 short-insert libraries were sequenced with 91 bp paired-end reads using Illumina HiSeq2000 (Illumina, San Diego, CA, USA) by BGI Hong Kong ...
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bioRxiv - Microbiology 2020Quote: ... as previously described.145,146 Deep-sequencing libraries were prepared using the Nextera XT DNA Library Prep Kit (Illumina, San Diego, CA, USA) and sequenced on MiSeq (Illumina).
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bioRxiv - Plant Biology 2020Quote: 42 RNA samples from experiment 1 were used for mRNA-Seq library preparation using the TruSeq Stranded mRNA Library Prep Kit (Illumina, CA, USA). Libraries were multiplexed and single-end 100 nt RNA-Seq was performed on a Novaseq 6000 at the GIGA Center (University of Liege ...
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bioRxiv - Microbiology 2021Quote: Metagenomic sequencing libraries were constructed by Genome Quebec using an Illumina TruSeq DNA PCR-Free Library Preparation kit (Illumina, Inc., CA, US) with a final size selection of 400 bp ...