Labshake search
Citations for Illumina :
4151 - 4200 of 10000+ citations since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
-
bioRxiv - Neuroscience 2023Quote: ... Copy number analysis was performed using CNVPartition plugin (Illumina). Early mosaicism states were evaluated by manual review of B allele frequency plots on a chromosomal level ...
-
bioRxiv - Cancer Biology 2023Quote: ... followed by library preparation and fragmentation using the Illumina TruSeq Kit (Illumina, CA). Paired-end 100 bp sequencing reads were generated using the Illumina NovaSeq 6000 machine (Illumina ...
-
bioRxiv - Cell Biology 2023Quote: ... according to manufacturer’s instructions and sequenced in a NextSeq instrument (Illumina). Analysis of small nucleotide variants was performed with Mutect2 and annotated with Funcotator (42) ...
-
bioRxiv - Cancer Biology 2023Quote: ... Paired-end 100 bp sequencing reads were generated using the Illumina NovaSeq 6000 machine (Illumina, CA). RNA-Seq read pre-processing was done using fastp with low complexity filters set and trimmed from both 3’ and 5’ ends.50 Reads were then aligned to human genome gencode v40 using STAR aligner in gene quantification mode with 2 pass enabled.51 Differential expression was performed using R package edgeR.52 Pathway enrichment was completed using Hallmark Gene Set from MsigDB and p-values were calculated via hypergeometric distribution.53
-
bioRxiv - Molecular Biology 2023Quote: ... After adapter ligation using IDT for Illumina TruSeq DNA UD Indexes (Illumina, 20022370), SSDS libraries were amplified during 15 cycles of PCR using TruSeq DNA Nano LP (Illumina ...
-
bioRxiv - Genomics 2023Quote: ... and stranded total RNA libraries were prepared using the TruSeq Stranded Total RNA Human/Mouse/Rat kit (Illumina), following manufacturer’s instructions.
-
bioRxiv - Neuroscience 2023Quote: ... and nuclei were resuspended in 200μl transposition mix (1x TD buffer containing X µl of Illumina Tagment DNA TDE1 Enzyme per every X nuclei) ...
-
bioRxiv - Neuroscience 2023Quote: ... Libraries were sequenced (150-nt pair-end sequencing; Illumina NovaSeq 6000).
-
bioRxiv - Physiology 2023Quote: ... A High-Output 75-cycle flow cell (Illumina Cat # 20024906) was used for single-end sequencing with a read length of 76 bp ...
-
bioRxiv - Microbiology 2023Quote: The V1 and V2 regions of the 16S rRNA gene were amplified using universal bacterial primers 27F and 355R74 with CS1 and CS2 adapters (Illumina, San Diego, CA). PCR was conducted with the following reaction composition ...
-
bioRxiv - Cell Biology 2023Quote: ... Libraries were prepared for sequencing using a TruSeq Stranded mRNA sample prep kit (Illumina, San Diego, CA, USA) according to the manufacturer’s instructions ...
-
bioRxiv - Neuroscience 2023Quote: ... GRCm38 build from iGenome (Illumina). The aligned SAM/BAM files were processed using Featurecounts with Default settings except we used Ensembl GRCm38 GTF file and output for DESeq2 and gene length file.
-
bioRxiv - Developmental Biology 2023Quote: ... France) for oriented library preparation (Illumina Truseq RNA Sample Preparation Kit) and sequencing (Paired-end 50-35 bp ...
-
bioRxiv - Genomics 2023Quote: The captured samples were sequenced on HiSeq 2000 sequencing platform (Illumina, California, USA) with a PairedEnd sequencing strategy of 2 reads of 100 bases ...
-
bioRxiv - Cancer Biology 2023Quote: ... 1 µg of total RNA with DV200 percentages varying from 78% to 100% underwent ribosomal depletion and library preparation using the TruSeq Stranded Total RNA LT Kit (Illumina catalog RS-122-1202) according to instructions provided by the manufacturer with 8 cycles of PCR ...
-
bioRxiv - Genetics 2023Quote: ... generated from Illumina Omniexpress or Global Screening Array (GSA ...
-
bioRxiv - Immunology 2023Quote: ... and were sequenced on a Novaseq 6000 (Illumina). Hashtag oligo libraries were amplified as described previously and were sequenced on a Nextseq 550(54).
-
bioRxiv - Neuroscience 2023Quote: ... Single-nucleus cDNA libraries were generated using the Chromium Single Cell 3’ v3 kit (10x Genomics) and sequenced at 600 million reads/library and 2×50 base pairs using the NovaSeq 6000 S2 platform (Illumina). Raw reads were demultiplexed and Cell Ranger (10x Genomics ...
-
bioRxiv - Genomics 2023Quote: ... 8 μl of modified DNA was subjected to methylation analysis on the Illumina Infinium MethylationEPIC BeadChip (Illumina, CA, USA) at UCL Genomics according to the manufacturer’s standard protocol.
-
bioRxiv - Microbiology 2023Quote: ... Total RNA samples were generated and quality was corroborated as described previously.46 rRNA depletion using the Ribo-Zero RNA Plus rRNA Depletion Kit (Illumina), library preparation ...
-
bioRxiv - Systems Biology 2023Quote: ... Sequencing was performed using a NextSeq 550 instrument (Illumina). Trimmed reads were mapped to The GRCh38 reference genome using STAR (25) ...
-
bioRxiv - Physiology 2023Quote: ... Sequencing was performed on an Illumina sequencer (Illumina Nova Seq 6000, San Diego, CA) in a 150 bp paired-end run.
-
bioRxiv - Cell Biology 2023Quote: ... Whole transcriptome sequencing was performed using NovaSeq6000 platform (Illumina) in a 101 bp single-end mode ...
-
bioRxiv - Bioengineering 2023Quote: ... and performed on Nextseq 2000 P3 – 200 cycles (up to 1.1 billion reads) (Illumina). Paired-end raw sequence data was processed using BioJupies and analyzed using plug-ins for analysis[20] ...
-
bioRxiv - Bioengineering 2023Quote: ... MiSeq Illumina library preparation was performed using barcoded DNA with the Nextera XT Index kit V2 (Illumina, San Diego, CA), following the manufacturer’s instructions for dual indexing ...
-
bioRxiv - Developmental Biology 2023Quote: ... The equimolar pool of samples was spiked into a NovaSeq6000 run targeting 20M reads per sample on a S1 FlowCell (Novaseq S1 Reagent Kit, 100 cycles, Illumina, Inc, California, USA). Reads from RNA-seq were first preprocessed by Trimmomatic (v0.40 ...
-
bioRxiv - Cancer Biology 2023Quote: ... Samples were added with 50mL trans-position reaction mix of Nextera DNA library preparation kit (FC-121-1031, Illumina). DNA was amplified by PCR and incubated at 37°C for 30 minutes ...
-
bioRxiv - Biochemistry 2023Quote: ... Sequencing was performed on an Illumina NovaSeq 6000 platform with NovaSeq 6000 SP Reagent Kit v1.5 100 cycles (Illumina, cat. no. 20028401). RNA seq experiments were conducted with three independent biological replicates.
-
bioRxiv - Genomics 2023Quote: ... after RNase I digestion (50 units nuclease per 40 µg of RNA; the nuclease was included in TruSeq Mammalian Ribo Profile Kit, Illumina, RPHMR12126), adding 15 µl of SUPERase-IN (Invitrogen ...
-
bioRxiv - Genomics 2023Quote: ... rRNA depletion was performed using RiboZero Plant Leaf kit (Illumina, MRZPL1224) in one quarter of the recommended reaction volume ...
-
bioRxiv - Genomics 2023Quote: ... A total of 4 µg of RNA per sample was subjected to rRNA depletion using the RiboZero Plant Leaf kit (Illumina, MRZPL1224) following the manufacturer’s recommendations ...
-
bioRxiv - Evolutionary Biology 2023Quote: ... including polyA selection and unique dual indexing (Cat. No. 20022371, Illumina Inc., CA, USA), according to the manufacturer’s protocol ...
-
bioRxiv - Developmental Biology 2023Quote: ... Libraries were sequenced by GeneCore (EMBL, Heidelberg, Germany) for 75 bp paired-end reads (Illumina NextSeq 500). Cell Ranger Software Suite 3.0.2 (10x Genomics ...
-
bioRxiv - Microbiology 2023Quote: ... Sequencing on the Illumina MiSeq with the MiSeq 150-cycle v3 kit (MS-102-3001; Illumina, San Diego, CA) was used to assess bacterial versus host enrichment of the libraries ...
-
bioRxiv - Genomics 2023Quote: ... before being loaded on a NextSeq 1000/2000 instrument (Illumina, San Diego, CA). For the NULISAseq 200-plex inflammation panel ...
-
bioRxiv - Genetics 2023Quote: ... with Index Primers from Illumina (IDT for Illumina DNA/RNA UD Indexes Set A (Illumina ...
-
bioRxiv - Genetics 2023Quote: We analyzed the whole genome sequences of 1,869 cattle from more than 70 different breeds generated by Illumina technology (Supplementary Table 14) ...
-
bioRxiv - Bioengineering 2023Quote: ... sequencing was performed at Novogene USA using the NovaSeq 6000 sequencer (Illumina) with a target of 35,000 reads per cell.
-
bioRxiv - Cancer Biology 2023Quote: ... samples were sequenced for low-pass whole genome sequencing with at least 0.1X coverage in a NovaSeq 6000 (Illumina).
-
bioRxiv - Cancer Biology 2023Quote: ... samples were pooled and sequenced on an Illumina NovaSeq 6000 (Illumina) according to standard 10X Genomics’ protocol.
-
bioRxiv - Cancer Biology 2023Quote: Then libraries with different indices were multiplexed and loaded on an NovaSeq6000 instrument according to manufacturer’s instructions (Illumina, San Diego, CA, USA). Sequencing was carried out using a 2×150 bp paired-end (PE ...
-
bioRxiv - Cancer Biology 2023Quote: ... image analysis and base calling were conducted by the NovaSeq6000 Control Software (HCS) + OLB + GAPipeline-1.6 (Illumina) on the NovaSeq6000 instrument.
-
bioRxiv - Cell Biology 2023Quote: ... Tagmented DNA was barcoded with Nextera Index Kit v2 (Illumina, Cat. #FC-131-2001) and amplified via PCR prior to a SPRI Bead cleanup to yield purified DNA libraries.
-
bioRxiv - Evolutionary Biology 2023Quote: ... Individual MinION sequencing statistics can be found in the GitHub repository (https://github.com/remygatins/Holacanthus_passer-ONT-Illumina-Genome-Assembly).
-
bioRxiv - Cell Biology 2023Quote: ... PhiX library (Illumina) was used for sequencing control and to diversify libraries.
-
bioRxiv - Cell Biology 2023Quote: ... after which the samples were subjected to library reverse transcriptase and amplification to tag the RNA molecules with specific and unique sample indexes (Illumina), followed by a final beads cleanup (1:0.8 ...
-
bioRxiv - Cell Biology 2023Quote: ... after which the plates were sequenced on the NextSeq 500 (Illumina) for 25 million reads per plate.
-
bioRxiv - Cancer Biology 2023Quote: ... TruSeq RNA UD Indexes (Illumina, #20022371) were used for the adapter ligation step ...
-
bioRxiv - Cancer Biology 2023Quote: ... RNA libraries were prepared using the TruSeq stranded mRNA-seq Library Preparation (Illumina, USA). Sequencing was performed with an Illumina HiSeq 2500 System (150 bp ...
-
bioRxiv - Cancer Biology 2023Quote: We first sequenced all scCUTseq libraries on NextSeq 500 (Illumina) in single-end mode using the NextSeq 500/550 High Output Kit (75 Cycles ...