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Citations for Illumina :
151 - 200 of 491 citations for Alpha Cyclodextrin Solution 5% w v since 2020
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Cell Biology 2024Quote: ... spiked in with 5% PhiX Control v3 (Illumina) and sequenced on an Illumina Novaseq 6000 at a depth of ∼50,000 reads/cell with dual index ...
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bioRxiv - Microbiology 2022Quote: ... 5’GTCTCGTGGGCTCGGAGATGTGTATAAGAGACAGGACTACHVGGGTATCTAAT CC3’) and ITS region amplification (primer 86F: 5’ TCGTCGGCAGCGTCAGATGTGTATAAGAGACAGGTGAATCATCGAATCTTTGAA3’; 4R: 5’ GTCTCGTGGGCTCGGAGATGTGTATAAGAGACAGTCCTCCGCTTATTGATATGC3’) and sequencing on the MiniSeq platform (Illumina®) to generate paired-end (PE ...
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bioRxiv - Genetics 2024Quote: ... 5 μL index primer N7xx and 5 μL index primer S5xx from Nextera XT V2 Index kit (Illumina, FC-131-2001) were used for the total volume of 50 μL ...
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bioRxiv - Molecular Biology 2023Quote: ... for 1[h at 60°C and was subsequently PCR amplified using the primers 5′-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTC-3′ and 5′-CAAGCAGAAGACGGCATACGAGATJJJJJJGTGACTGGAGTTCAGACGTGTG-3′(where Js indicates the 6-mer index sequence for Illumina sequencing).
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bioRxiv - Genomics 2020Quote: ... sequencing libraries were prepared from 1 ng gDNA using the Nextera XT Library Preparation Kit v.3 (Illumina) and sequenced on the Illumina NextSeq system (paired end 2 x 150 bp insert size) ...
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bioRxiv - Systems Biology 2021Quote: ... ADT and V(D)J libraries were sequenced separately on a Next-seq platform (Illumina, San Diego, CA). The sequencing depths are shown in Table S2.
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bioRxiv - Microbiology 2021Quote: ... The sequencing library was prepared using the Nextera XT V.2 Index Kit (Sets A and D, Illumina) according to the Illumina 16S MiSeq Sequencing Library protocol ...
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bioRxiv - Cancer Biology 2020Quote: ... in paired-end mode on Illumina (2×101 bp) using TrueSeq DNA exome kit (v.6) (Illumina Inc.). Paired-end reads were aligned to the human reference genome sequence GRCh38 using BWA–MEM (V0.715-r1140 ...
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bioRxiv - Genetics 2020Quote: ... HiScan raw intensity data (IDAT) were loaded into the Genotyping module of GenomeStudio v.2.0.4 software (Illumina, 2016) for genotype calling and quality conrol ...
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bioRxiv - Microbiology 2022Quote: ... The cleaned pool was sequenced on the Illumina MiSeq using v.2 2_250 base-pair kit (Illumina, Inc). Two PCR controls were also sequenced to test for PCR reagent contamination.
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bioRxiv - Genomics 2023Quote: Quality-based read trimming was performed to remove poor-quality reads and contaminating adapter sequences using trimmomatic v.0.39 (Bolger et al., 2014) (parameters: ILLUMINACLIP:Illumina-adapters.fa:2:30:10 SLIDINGWINDOW:10:20 MINLEN:50) ...
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bioRxiv - Microbiology 2023Quote: ... The recovered DNA fragments were sequenced using the MiSeq 500PE v.2 kit (Illumina, San Diego, CA, USA). Short-read sequences from each PCR fragment were assembled using Spades v 3.1(31) ...
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bioRxiv - Plant Biology 2024Quote: ... Base calling and de-multiplexing of indexed reads were carried out using CASAVA v.1.8.2 conversion software (Illumina) to produce read sequences in fastq format ...
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bioRxiv - Genetics 2024Quote: Sequenced paired-ends reads from DRIP-seq experiments were subjected to a quality control pipeline using the FASTQ Toolkit V.1.0.0 software (Illumina) and then mapped to the hg38 reference genome using the Rsubread V2.0.1 software package with unique=TRUE parameter101 ...
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bioRxiv - Molecular Biology 2023Quote: ... 1μl of adaptors (1μl of a 1:250 dilution of Illumina stock solution), 2.5μl water and 1.5 ml of NEB Quick ligase (NEB ...
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bioRxiv - Evolutionary Biology 2021Quote: ... and 12.5 pmol each of the following Illumina primers: 5′-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCG ATCT and 5′-CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCT TCCGATCT (the underlined parts will hybridize to the two Illumina flowcell oligos). Temperature cycling consisted of 72 ◻C for 5 min ...
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bioRxiv - Evolutionary Biology 2021Quote: ... Illumina sequencing libraries were generated for 5 αHHβHH mice and 5 αLLβHL mice using TruSeq RNA Sample Preparation Kit v2 (Illumina, San Diego, CA, USA) and sequenced on an Illumina HiSeq2500 platform ...
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bioRxiv - Genetics 2021Quote: ... 5 µl water) with 2.5 µl transposase (Illumina 20034197) for 30 min at 37 °C with shaking at 1000 r.p.m ...
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bioRxiv - Neuroscience 2020Quote: ... An additional 5 samples were sequenced on MiSeq (Illumina).
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bioRxiv - Microbiology 2022Quote: ... spiked with 5% PhiX pre-made library from Illumina and loaded on a Miseq v3 kit (Illumina Inc. ...
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bioRxiv - Immunology 2020Quote: ... 5 μl PPC (Illumina Nextera DNA Sample Preparation Kit) and 20 μl DNA ...
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bioRxiv - Microbiology 2023Quote: ... for each sample 2 μl of 5’ adapter (Illumina) (total 12 μl ...
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bioRxiv - Immunology 2022Quote: ... mixed with 5% PhiX and sequenced on MiSeq (Illumina) using MiSeq V3 2 × 300 cycle kit (Illumina).
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bioRxiv - Genomics 2023Quote: ... 5 µL Tn5 transposase (Illumina Cat FC-121-1030) and 22,5 µL nuclease-free H2O and incubated at 37 °C for 30 mins ...
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bioRxiv - Microbiology 2023Quote: ... A 5% PhiX control (Illumina, San Diego, CA, USA) along with positive (DNA sample extracted from the healthy gut ...
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bioRxiv - Developmental Biology 2023Quote: ... and 5 µM RT Primer (RTP, TruSeq kit; Illumina) was then performed according to the manufacturer’s recommendations ...
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Extensive introgression among North American wild grapes (Vitis) fuels biotic and abiotic adaptationbioRxiv - Evolutionary Biology 2021Quote: ... An RNA-Seq library was prepared using the Illumina TruSeq RNA sample preparation kit v.2 (Illumina, CA, USA) following Illumina’s Low-throughput protocol ...
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bioRxiv - Genomics 2020Quote: ... A cDNA library was also prepared using the Illumina TruSeq RNA sample preparation kit v.2 (Illumina, CA, USA) following Illumina’s low-throughput protocol ...
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bioRxiv - Genomics 2022Quote: ... Short-read cDNA libraries were prepared using the Illumina TruSeq RNA sample preparation kit v.2 (Illumina, CA, USA) following Illumina’s low-throughput protocol ...
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bioRxiv - Immunology 2023Quote: ... HTGTS-V(D)J-seq libraries were sequenced using paired-end 300-bp sequencing on a Mi-Seq (Illumina) machine ...
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bioRxiv - Neuroscience 2023Quote: ... Raw base calls were demultiplexed and converted into sample specific fastq files using default parameters of the bcl2fastq program (v 2.20, Illumina). Trimmed reads (TrimGalore ...
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bioRxiv - Evolutionary Biology 2024Quote: ... on an Illumina NovaSeq 6000 with an expectation of a minimum number of 1.5 million read pairs per sample. We used Stacks v.2.62 (Catchen et al. 2011, 2013) to build loci from Illumina reads ...
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bioRxiv - Immunology 2024Quote: ... The 10nM library was denatured and further diluted before loading on a NovaSeq 6000 sequencing platform (v.1.5 chemistry, 28/98 bp paired-end, Illumina) at Novogene (Cambridge ...
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bioRxiv - Evolutionary Biology 2024Quote: We used different scripts included in Stacks v.2.60 (Catchen Amores, Creskp & Postlewait, 2011; Catchen, Hohenlohe, Bassham, Amores & Cresko, 2013) to build loci from Illumina reads ...
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bioRxiv - Microbiology 2024Quote: ... paired-end reads were demultiplexed and subjected to quality control and adapter trimming with BCL Convert (v. 9.3) (Illumina).
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bioRxiv - Cell Biology 2024Quote: ... with the Chromium Single Cell 3′ v.3.1 kit(10x Genomics, no. PN- 1000121) and sequenced on the NovaSeq 6000 platform (Illumina) to obtain around 50,000 reads per cell.
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bioRxiv - Immunology 2024Quote: ... on a NextSeq 500 using the NextSeq 500/550 High Output Kit V.2 according to the manufacturer’s instructions (Illumina). For each sample ...
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bioRxiv - Cancer Biology 2024Quote: ... scRNAseq libraries of 5000 cells/ sample were generated by 10X genomics chromium next gem single cell 3ʹ v.3.1 and sequencing was performed by Illumina NovaSeq6000 platform with 50,000 reads/cell targeting 90G of total data for each sample ...
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bioRxiv - Immunology 2021Quote: ... Genotyping of the VRC cohort and imputation of genetic variants are described in detail elsewhere.55 We interrogated 7,637,921 variants (imputed from 2,783,635 genetic variants with a minor allele frequency ≥ 5%, measured using the Illumina Human Omni 5 BeadChip array, GRCh37) for an association with each of the 166 ToxScan peptides using the penalized quasi-likelihood (PQL ...
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bioRxiv - Microbiology 2023Quote: ... The V3-V4 region of the 16S ribosomal RNA gene was amplified by PCR with universal bacterial primer sets (5’-TCGTCGGCAGCGTCAGATGTGTATAAGAGACAGCCTACGGGNGGCWGCAG-3’ and 5’-GTCTCGTGGGCTCGGAGATGTGTATAAGAGACAGGACTACHVGGGTATCTAATCC-3’) and was sequenced using MiSeq Reagent kit v3 (600 cycle) (Illumina Inc., California, US). The sequence data were analyzed using QIIME2 (https://qiime2.org/ ...
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bioRxiv - Microbiology 2024Quote: ... The V3-V4 region of the 16S ribosomal RNA gene was amplified by PCR using universal bacterial primer sets (5’-TCGTCGG-CAGCGTCAGATGTGTATAAGAGACAGCCTACGGGNGGCWGCAG-3’ and 5’-GTCTCGTGGGCTCGGAGATGTGTATAAGAGACAGGACTACHVGGG-TATCTAATCC-3’) and sequenced using the MiSeq Reagent kit v3 (600 cycle) (Illumina Inc., California, US). The sequence data were processed using QIIME2 (version 2020.2 ...
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bioRxiv - Cancer Biology 2021Quote: ... TN5 transposase was added to the buffer solution (Nextera DNA-library preparation kit, Illumina, Cat# FC-121-1030 ...
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bioRxiv - Molecular Biology 2023Quote: ... The RNA solution was then applied to the HiSeq 3000 system (Illumina, CA, USA). Read count data were processed using Cell Ranger (10X Genomics ...
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bioRxiv - Cancer Biology 2021Quote: ... The captured libraries were sequenced to achieve a mean unique coverage of at least 1000x using Illumina v.4 chemistry and paired-end 100-base pair (bp) reads (HiSeq, Illumina).
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bioRxiv - Cancer Biology 2021Quote: ... The flow cell underwent cluster amplification and massively parallel sequencing by synthesis using Illumina v.4 chemistry and paired-end 100-bp reads (Illumina).
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bioRxiv - Genomics 2021Quote: ... Paired-end sequencing was completed using NextSeq 500/550 300-cycle High-Output Kits v 2.5 (Illumina; 2 × 150 cycles). High-Output kit used for the generation of the NextSeq data allows for over 25 times more sequence data to be generated compared to MiSeq v2 sequencing (800M versus 30M paired reads ...
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bioRxiv - Microbiology 2021Quote: ... WGS of the isolates was performed by MicrobesNG (Birmingham, UK) using the Nextera XT library prep protocol v.05 (Illumina) on an Illumina MiSeq platform using 2 x 250 bp paired-end reads ...
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bioRxiv - Cancer Biology 2020Quote: ... then 60 ng was used for library preparation using KAPA Stranded RNA-Seq Library Preparation Kit (Illumina, KR0934 – v 1.13). The samples were barcoded and pooled in sets of eight per run to generate paired 150-bp reads with NextSeq 550 Sequencing System (Illumina) ...
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bioRxiv - Immunology 2021Quote: ... The cDNA was enriched for V(D)J cDNA using the Human B cell Chromium Single Cell V(D)J Enrichment Kit (Cat#1000016) followed by library construction to add the priming sites used by Illumina sequencers ...
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bioRxiv - Cancer Biology 2022Quote: ... equal amount of RNA from each sample or cell types were used to generate the library using the TruSeq RNA Sample Prep Kit v.2 (Illumina). Paired-end sequencing was performed using TruSeq 3000 4000 SBS Kit v.3 (Illumina ...