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Citations for Illumina :
51 - 100 of 491 citations for Alpha Cyclodextrin Solution 5% w v since 2020
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Genomics 2023Quote: ... the Illumina TruSeq RNA sample preparation kit v.2 (Illumina, CA, USA) was used for library preparation following the low-throughput protocol ...
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bioRxiv - Neuroscience 2023Quote: ... Sequencing data were demultiplexed using the bcl2fastq2 Conversion Software (v. 2.20, Illumina), and primary data analysis was performed with the Cell Ranger Gene Expression pipeline (version 3.1.0 ...
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bioRxiv - Cancer Biology 2024Quote: ... Sequencing data were demultiplexed using the bcl2fastq2 Conversion Software (v. 2.20, Illumina) and primary data analysis performed with the Cell Ranger Gene Expression pipeline (v.6.0.0 for BCC6 and BCC7 and v.7.1.0 for Baseline1/2 ...
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bioRxiv - Cancer Biology 2024Quote: ... samples were hybridized to Human HT-12 V.4.0 BeadChip arrays (Illumina) according to the manufacturer’s instructions ...
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bioRxiv - Microbiology 2024Quote: ... were attached to overhang adaptors (Forward overhang:5’ TCGTCGGCAGCGTCAGATGTGTATAAGAGACAG, and Reverse overhang:5’ GTCTCGTGGGCTCGGAGATGTGTATAAGAGACAG) at the 5’ end of the respective primer sequences (Illumina, Inc.) and used to amplify the region of interest.
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bioRxiv - Cancer Biology 2023Quote: ... Each well contained 5□μL NIB and 5□μL TD buffer from Illumina, and 1 mL of 2.5 mM uniquely indexed transposome ...
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bioRxiv - Genomics 2020Quote: ... De-multiplexing of RNA-Seq reads was conducted using bcl2fastq v.2 (Illumina). Both DNA-Seq and RNA-Seq reads were submitted to FastQC 51 for quality validation.
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bioRxiv - Genetics 2021Quote: ... SNPs were called using GenomeStudio software V.2011.1 (Illumina, Inc. San Diego, CA) and the physical positions of the SNPs were determined by using the IT97K-499-35 reference genome v1.0 (Lonardi et al. ...
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bioRxiv - Cell Biology 2021Quote: ... LT-PTC and pUC using TruSeq mRNA sample prep kit v.2 (Illumina). Sequence alignment and RNA-Seq analysis ...
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bioRxiv - Genomics 2021Quote: ... The data were demultiplexed and converted to fastq using bcl2fastq2 v.2.20 (Illumina). Illumina data underwent QC with MultiQC v.1.5 (Ewels et al ...
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bioRxiv - Immunology 2020Quote: ... Single-cell TCR V(D)J libraries were sequenced with HiSeq2500 machine (Illumina). All sequencing was done according to the manufacturer’s specification (10X Genomics).
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bioRxiv - Immunology 2022Quote: ... Sequencing data were analyzed with the Assign TruSight HLA v.2.1 software (Illumina).
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bioRxiv - Microbiology 2024Quote: ... MinION reads were assembled using IRMA v 0.6.7 (16) and validated by Illumina sequencing as previously described (17) ...
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bioRxiv - Evolutionary Biology 2024Quote: ... Genotypes were called using Illumina’s Genome Studio Genotyping Module v 2.0.5 (Illumina, 2016). Filtering criteria included a SNP call frequency > 0.85 ...
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bioRxiv - Immunology 2023Quote: ... cDNA libraries were generated using the TruSeq Sample Preparation v.2 Guide (Illumina) and paired end-sequenced on the NovaSeq 6000 (Illumina) ...
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bioRxiv - Immunology 2023Quote: ... cDNA Libraries were generated using the TruSeq Sample Preparation v.2 Guide (Illumina) and paired end-sequenced on the NovaSeq 6000 (Illumina ...
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bioRxiv - Cancer Biology 2023Quote: ... and V(D)J-enriched libraries were sequenced on a NextSeq 550 (Illumina).
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bioRxiv - Genetics 2023Quote: After demultiplexing the barcoded sequences using the CASAVA pipeline v.1.8 (Illumina, Inc.), the GBS data were processed using GBS2popgen.sh (available on GitHub at ...
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bioRxiv - Genomics 2023Quote: ... and preliminary QC were conducted using the Dragen pipeline (v.1.3.0, Illumina Inc). Reads were submitted to the NCBI Short Read Archive (SRA ...
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bioRxiv - Genomics 2023Quote: ... and combined with PhiX control (v.3, Illumina Inc, San Diego, CA, USA) at a final concentration of 1% ...
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bioRxiv - Immunology 2024Quote: ... and quantification of reads were performed using DRAGEN RNA pipeline (v 4.0.4, Illumina). Human genome version 38 (alt-masked v3 ...
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bioRxiv - Molecular Biology 2024Quote: ... Sequencing was performed using the NovaSeq 6000 SP Reagent Kit v 1.0 (Illumina) with 101 bp paired-end reads.
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bioRxiv - Genomics 2024Quote: ... BCL files were converted to FastQ files using bcl2fastq (v.2.19) from Illumina. Read 1 and Read 2 FastQ files were processed using a Snakemake pipeline (20) ...
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bioRxiv - Molecular Biology 2024Quote: Raw data files were imported into the GenomeStudio Genotyping Module (v.2.0, Illumina) using a custom-generated sample sheet ...
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bioRxiv - Genetics 2024Quote: The sequencing reads were demultiplexed with CellRanger (v 4.0.0) mkfastq with bcl2fastq (Illumina) with default parameters ...
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bioRxiv - Microbiology 2021Quote: ... 5 in treatment d28_0 and 5 from d28_100 (Illumina HiSeq, 2×150bp, GenoScreen, France). Reads corresponding to animal sequences were identified by aligning each dataset against Oryzias latipes available at the NCBI ...
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bioRxiv - Physiology 2021Quote: ... 3’ and 5’ adaptors (Illumina) were ligated and the resulting product was reverse transcribed to generate cDNA by PCR ...
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bioRxiv - Microbiology 2021Quote: ... 5) DC3000 + C (Illumina only), 6 ...
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bioRxiv - Immunology 2022Quote: ... and 5 µl Tn5 (Illumina) in nuclease-free water or in 50 µl tagmentation mix “Corces et al ...
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bioRxiv - Developmental Biology 2020Quote: ... 5 ul TDE1 (Illumina 20034197)) and shaken at 1000 RPM for 30 minutes at 37°C ...
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bioRxiv - Biochemistry 2024Quote: Forward Illumina Adapter: 5’-ACACTCTTTCCCTACACGACGCTCTTCCGATCTXXXX-3’ Reverse Illumina Adapter: 5’-GACTGGAGTTCAGACGTGTGCTCTTCCGATCTXXXX-3’ Next generation (Illumina) sequencing was performed by Azenta (Amplicon-EZ) ...
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bioRxiv - Genomics 2020Quote: ... SAMtools v.1.9 [59] was used to filter out secondary and duplicate (Illumina only) alignments and calculate sequencing depth for each position ...
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bioRxiv - Immunology 2022Quote: ... and BCR enriched V(D)J libraries were sequenced either on a Nextseq500 (Illumina) using a high output 150 cycle flowcell ...
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bioRxiv - Developmental Biology 2020Quote: ... Amplified cDNA was further processed according to TruSeq Sample Preparation v.2 Guide (Illumina) and paired end-sequenced (2×75 bp ...
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bioRxiv - Genetics 2020Quote: ... Copy number variation calling was performed using GenomeStudio v.2011.1 and cnvPartition 3.2.0 (Illumina).
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bioRxiv - Cancer Biology 2022Quote: ... Paired-end sequencing was performed using TruSeq 3000 4000 SBS Kit v.3 (Illumina) on the HiSeq 4000 platform (11 ...
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bioRxiv - Cancer Biology 2024Quote: ... A customized version of the paired-end sample Prep Kit from Illumina (V.1.1) was used for sample preparation1 ...
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bioRxiv - Cell Biology 2024Quote: ... were made with “IDT for Illumina RNA UD” indices by Stranded Total RNA Prep Ligation w/Ribo-Zero Plus (Illumina, 20072063). Yield/size distribution were assessed by Fragment Bioanalyzer (Agilent ...
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bioRxiv - Genetics 2022Quote: ... The flow cell was loaded with 5 picomolar pooled libraries containing 5% PhiX control V3 (Illumina). Raw sequencing data were demultiplexed with Bcl2Fastq software (v2.19 ...
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bioRxiv - Microbiology 2024Quote: ... with 5% PhiX loading control (Illumina).
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bioRxiv - Genomics 2024Quote: ... with 5% PhiX spike-in (Illumina).
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bioRxiv - Cancer Biology 2024Quote: ... with 5% PhiX library control (Illumina). Autosmal ranged from 23X to 29X ...
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bioRxiv - Cancer Biology 2021Quote: ... RNA samples were further processes according to the TruSeq Sample Preparation v.2 Guide (Illumina) and paired end-sequenced on the HiSeq 2500 (Illumina).
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bioRxiv - Immunology 2021Quote: ... Both gene expression and V(D)J libraries were sequenced on a Novaseq S4 (Illumina), targeting a median sequencing depth of 50,000 and 5,000 read pairs per cell ...
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bioRxiv - Evolutionary Biology 2022Quote: We used Stacks v.2.41 (Catchen et al. 2011; 2013) to build loci from Illumina reads ...
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bioRxiv - Genetics 2021Quote: ... data was converted from bcl format to FastQ format using bcl2fastq (v 2.19.0, Illumina Inc.) with the following options with-failed-reads ...
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bioRxiv - Cell Biology 2021Quote: ... Sequencing was performed using a High Output v 2.5 (150 cycles) kit (Illumina, cat. 20024907) on a NextSeq 500 ...
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bioRxiv - Microbiology 2020Quote: Paired-end read files were processed and assembled with CLC Genomics Workbench v.9.5.3 (Illumina) using their de novo assembly algorithm with default parameters ...
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bioRxiv - Cancer Biology 2022Quote: Sequencing output data was converted to FASTQ-format using bcl2fastq software (v.2.20, Illumina, USA). FastQC was used for quality controls (24) ...
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bioRxiv - Genomics 2020Quote: ... DNA samples underwent sequencing on an Illumina HiSeq X Ten sequencer (v.2.5 chemistry, Illumina) using 150 bp ...