Labshake search
Citations for Illumina :
1651 - 1700 of 10000+ citations since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
-
bioRxiv - Genomics 2024Quote: ... Genomes were assembled from Illumina reads using Unicycler (v0.4.8 ...
-
bioRxiv - Genomics 2024Quote: ... combined with methylation data collected from the public TCGA LUAD study (Illumina Human Methylation 450k BeadChip) (Supplementary Table 1) ...
-
bioRxiv - Cancer Biology 2024Quote: ... fusion transcripts (Illumina HiSeq2500), and MGMT promoter methylation (PyroMark Q24 ...
-
bioRxiv - Cancer Biology 2024Quote: ... Disease-relevant genomic alterations (Agilent Haploplex assay, Illumina HiSeq2500), fusion transcripts (Illumina HiSeq2500) ...
-
bioRxiv - Cancer Biology 2024Quote: ... raw files were demultiplexed with bcl2fastq (Illumina) without adapter trimming and with the option for --create-fastq-for-index-reads ...
-
bioRxiv - Cancer Biology 2024Quote: cDNA libraries were prepared with TruSeq stranded mRNA library prep Kit (Illumina, RS-122-2101) using 1 μg of total RNA ...
-
bioRxiv - Cancer Biology 2024Quote: ... to FASTQ files using bcl2fastq v2.20.0.422 (Illumina).
-
bioRxiv - Cancer Biology 2024Quote: ... Samples were sequenced on either a NovaSeq 6000 (Illumina) or NextSeq 550 (Illumina ...
-
bioRxiv - Cancer Biology 2024Quote: ... or NextSeq 550 (Illumina) at a final depth of roughly 100 K-200 K reads/cell.
-
bioRxiv - Cell Biology 2024Quote: ... Sequencing of the mRNA libraries was performed in a HiSeq2500 (Illumina Inc, San Diego, CA, USA) to obtain at least 30 million 51nt-single-end reads per sample ...
-
bioRxiv - Molecular Biology 2024Quote: ... We found that TDE1 enzyme (Illumina Tagment DNA Enzyme and Buffer Small Kit ...
-
bioRxiv - Molecular Biology 2024Quote: ... Raw sequencing data was demultiplexed by Illumina’s Bcl2Fastq software to resolve reads per OAK sub-libraries ...
-
bioRxiv - Molecular Biology 2024Quote: ... Libraries were sequenced on the Novaseq 6000 (Illumina) instrument and sequenced data were processed using Kallisto to generate a count file matrix for each individual sample ...
-
bioRxiv - Genomics 2024Quote: ... cDNA sequencing libraries were constructed using the TruSeq Stranded RNA Kit (Illumina, San Diego, CA) and sequenced on the Illumina HiSeq4000 platform by Novogene (https://www.novogene.com/us-en/) ...
-
bioRxiv - Neuroscience 2024Quote: ... RNA quality and cDNA library quality were checked before paired indexing sequencing (Illumina NovaSeq 6000). The sequencing process was entirely controlled by data collection software provided by Illumina ...
-
bioRxiv - Neuroscience 2024Quote: ... and libraries were constructed by using 600 ng of total RNA from each sample and utilizing a TruSeqV2 kit from Illumina (Illumina, San Diego, CA) following the manufacturer’s suggested protocol ...
-
bioRxiv - Neuroscience 2024Quote: ... and libraries were constructed by using 600 ng of total RNA from each sample and utilizing a TruSeqV2 kit from Illumina (Illumina, San Diego, CA) following the manufacturer’s suggested protocol ...
-
bioRxiv - Cancer Biology 2024Quote: ... and sequencing (NextSeq 500, Illumina) by Glasgow Polyomics (University of Glasgow ...
-
bioRxiv - Neuroscience 2024Quote: Sequencing libraries were prepared using Truseq stranded RNA RiboZero Gold (Illumina) on ribosomal RNA depleted (RiboZero Gold ...
-
bioRxiv - Neuroscience 2024Quote: ... Paired end RNA-seq data were obtained from Illumina Hiseq2500 platform using 2X100 bp sequencing read length ...
-
bioRxiv - Neuroscience 2024Quote: Libraries were prepared using TruSeq DNA PCR-Free (Illumina) and were sequenced with 150-base-pair paired end reads on an Illumina HiSeq 4000 ...
-
bioRxiv - Molecular Biology 2024Quote: ... Libraries were then pooled at equimolar concentrations and high-throughput sequencing was performed by Illumina HiSeq 6000 high-throughput sequencer (Illumina ...
-
bioRxiv - Molecular Biology 2024Quote: ... Libraries were then pooled at equimolar concentrations and high-throughput sequencing was performed by Illumina HiSeq 6000 high-throughput sequencer (Illumina, San Diego, USA). Differential abundance analyses were performed using ANCOM (Analysis of composition of microbiomes ...
-
bioRxiv - Molecular Biology 2024Quote: ... The libraries were used for 100 nt paired-end sequencing by an Illumina HiSeq4000 (Illumina). After removing the low-quality and adapter sequences using Trimmomatic ...
-
bioRxiv - Genetics 2024Quote: ... The exomes were then sequenced on an Illumina HiSeq 4000 (Illumina, San Diego, CA, USA) according to the manufacturer’s instructions ...
-
bioRxiv - Genetics 2024Quote: Genotypes were extracted from Illumina’s final report file using custom scripts and converted into plink .ped/.map files (https://www.cog-genomics.org/plink/1.9/formats) ...
-
bioRxiv - Evolutionary Biology 2024Quote: ... Libraries were then sequenced in multiplex as single 75 bp reads using a NextSeq500 sequencer (Illumina). An average of 51.4 M reads was generated per library ...
-
bioRxiv - Genomics 2024Quote: ... and sequenced on a NextSeq 550 using a NextSeq 500/550 High Output v2.5 75 cycle kit (Illumina) using custom sequencing primers NP0494-NP0497 ...
-
bioRxiv - Pharmacology and Toxicology 2024Quote: ... Sequencing was conducted on a Novaseq 600 (Illumina, San Diego, CA) (2x150 bp ...
-
bioRxiv - Pathology 2024Quote: ... pooled libraries at 1.6 pM were sequenced on the NextSeq 500 sequencing platform (Illumina) on a NextSeq Mid 150 flowcell.
-
bioRxiv - Plant Biology 2024Quote: ... and then sequenced on half lane NovaSeq 6000 using the paired-end 2×50 cycle chemistry (Illumina, San Diego, CA, USA). Data is deposited under accession number PRJEB60373.
-
bioRxiv - Bioengineering 2024Quote: ... 10bp (Index i5) and 90bp (Read 2) (Illumina).
-
bioRxiv - Pharmacology and Toxicology 2024Quote: ... containing raw reads from Illumina 150bp paired-end sequencing ...
-
bioRxiv - Physiology 2024Quote: ... 2.5 µL of 25 μM reverse primer (Nextera/Illumina i7 adaptors (Illumina), 10 µL of SYBR green reagent ...
-
bioRxiv - Physiology 2024Quote: ... Pellets (nuclei fractions) were resuspended in transposition buffer (50% v/v 2X Tagment DNA (TD) Buffer (Illumina, 336 Cambridge, UK), 32% v/v PBS ...
-
bioRxiv - Physiology 2024Quote: ... 2.5 µL of 25 μM reverse primer (Nextera/Illumina i7 adaptors (Illumina), 10 µL of SYBR green reagent ...
-
bioRxiv - Physiology 2024Quote: ... and subjected to 52-bp paired-end sequencing on a NovaSeq 6000 (Illumina). Differential gene expression analysis was conducted using the DESeq2 R-package ...
-
bioRxiv - Physiology 2024Quote: ... 100-bp forward strand reads per sample on NextSeq2000 (Illumina, CA, USA). DNA alignment ...
-
bioRxiv - Physiology 2024Quote: ... Sequencing libraries were prepared with Watchmaker DNA Library Prep kits with Fragmentation (Watchmaker, CO, USA) and sequenced using the Illumina NovaSeq instrument (Illumina, CA, USA) with the shotgun sequencing method (a depth of 2 million 2x150 bp read pairs) ...
-
bioRxiv - Physiology 2024Quote: ... Libraries were prepared using the TruSeq stranded mRNA library kit (20020595, Illumina) starting from 200 ng of RNA ...
-
bioRxiv - Physiology 2024Quote: ... Sequencing was performed on the NovaSeq 6000 (Illumina) system (PE 2x51 for Akt-MycKO samples and PE100 for 7-month-old adult and HSA-MycTG samples) ...
-
bioRxiv - Plant Biology 2024Quote: ... The Cowpea iSelect Consortium Array (Illumina Inc., California, USA), which assays 51,128 SNPs [23] was used to genotype each DNA sample ...
-
bioRxiv - Physiology 2024Quote: ... supplemented with 5% v/v TDE1 Tagment DNA Enzyme (Illumina, Cambridge, UK) in nuclease free water (Sigma ...
-
bioRxiv - Physiology 2024Quote: ... tagmented DNA was amplified by PCR in a reaction mix (5 µL DNA, 2.5 µL of 25 μM forward primer (Nextera/Illumina i5 adaptors (Illumina)) ...
-
bioRxiv - Plant Biology 2024Quote: ... All genotypes were resequenced (Illumina HiSeq X10 and Illumina NovaSeq 6000 paired-end sequencing ...
-
bioRxiv - Plant Biology 2024Quote: ... DNA libraries were multiplexed and loaded on an Illumina MiSeq instrument according to the manufacturer’s instructions (Illumina, San Diego, CA, USA). Sequencing was performed using a 2x300/250 paired-end (PE ...
-
bioRxiv - Physiology 2024Quote: ... Based RNA integrity value above 7 determined by the spectrofluorometric measurement RNA samples was poly-A selected and reverse transcribed using Illumina’s TruSeq stranded mRNA library preparation kit (Cat# 20020595; Illumina, San Diego, CA). Library preparation was done for each sample fitted with one of 96 adapters with different 8 base molecular barcode for high level multiplexing and following 15 cycles of PCR amplification ...
-
bioRxiv - Biophysics 2024Quote: Sequencing data from Illumina Miseq was processed to extract tile and coordinates of each sequenced cluster ...
-
bioRxiv - Bioengineering 2024Quote: ... The resulting cell nuclei were subjected to incubation for 30 min with Tagment DNA TDE1 Enzyme and Buffer (Illumina, #FC-121-1030). This step fragmented the chromatin and inserted sequencing adapters ...
-
bioRxiv - Cancer Biology 2024Quote: ... MultiQC (v1.7; Illumina) was used for data quality assessments ...