Labshake search
Citations for Illumina :
7551 - 7600 of 10000+ citations since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Cell Biology 2023Quote: ... Sequencing was performed by NovaSeq 6000 (Illumina) with 2 x 150 bp and 60 Mio reads per sample ...
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bioRxiv - Biochemistry 2023Quote: ... RNA-sequencing libraries were prepared using the NEBNext Ultra II RNA Library Prep Kit (Illumina). Paired-end 150bp sequencing was done on a NovaSeq 6000 machine (Illumina).
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bioRxiv - Developmental Biology 2023Quote: ... Samples were sequenced on Nextseq 2000 (Illumina) with 100bp paired-end sequencing at DKFZ ...
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bioRxiv - Developmental Biology 2023Quote: ... Beads were washed with Tagmentation Wash Buffer (10mM Tris, pH 7.5, 5mM MgCl2) and incubated with Tn5 transposes (Illumina Tagment DNA Enzyme and Buffer Small Kit ...
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bioRxiv - Molecular Biology 2023Quote: ... Libraries were constructed from 300 ng (liver) or 200 ng (hypothalamus) total RNA (NEBNext Multiplex Small RNA library prep set for Illumina, New England Biolabs, NEB-E7560S) and the small RNA fraction was sequenced on the NextSeq 500 System (Illumina ...
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bioRxiv - Cancer Biology 2023Quote: ... Libraries were pooled and sequenced on NovaSeq 6000 (Illumina) to generate 30 millions of single-end 50-base pair reads for each sample.
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bioRxiv - Cancer Biology 2023Quote: ... Sequencing was then performed on the NovaSeq6000 (Illumina, San Diego, CA, United States) platform.
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bioRxiv - Cancer Biology 2023Quote: The libraries were pooled equimolarly and the final pool was also checked on an Agilent 2100 bioanalyzer and sequenced on NovaSeq 6000 (Illumina) with 100 chemistry cycles.
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bioRxiv - Cancer Biology 2023Quote: ... The RNA libraries were created using the TrueSeq Small RNA Library preparation kit from Illumina, and then sequenced for 45 cycles on the Illumina HiSeq 2000 platform (1 x 75bp read length) ...
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bioRxiv - Cancer Biology 2023Quote: ... Raw sequencing reads in BCL format were processed through bcl2fastq (v2.19, Illumina) for Fastq conversion and demultiplexing.
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bioRxiv - Cancer Biology 2023Quote: ... Final DNA libraries sequencing was performed in Illumina NovaSeq 6000 platform using the NovaSeq 6000 S1 Reagent Kit 300 cycles (2 x 150 paired-end reads) (Illumina). Sequencing data were analysed with Illumina DRAGEN Bio-IT Platform v4.0 using proprietary pipelines for variant calling ...
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bioRxiv - Microbiology 2023Quote: ... protists were purified from caecal contents and immediately transferred on ice to the Princess Margaret Genomics Centre (Toronto, Canada) for STAMP library preparation using Drop-seq technology and sequenced on a NextSeq 500 (Illumina, San Diego, CA, USA)37 ...
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bioRxiv - Systems Biology 2023Quote: ... 2500 instrument (Illumina). Trimmed reads were mapped to the GRCm38 reference genome using STAR (25) ...
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bioRxiv - Evolutionary Biology 2023Quote: Raw reads from Illumina were host-filtered ...
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bioRxiv - Immunology 2023Quote: ... 3 (Illumina).
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bioRxiv - Microbiology 2023Quote: ... The libraries were sequenced with NextSeq 500/550 High Output Kit v2.5 (75 Cycles) on a NextSeq 500 device (Illumina). The sequences were demultiplexed and assembled as full-length genomes using the DRAGEN COVIDSeq Test Pipeline on a local DRAGEN server (Illumina) ...
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bioRxiv - Microbiology 2023Quote: ... Sequencing was performed with the Illumina COVIDSeq Test (Illumina, San Diego, California), using 98-target multiplex amplifications along the full SARS-CoV-2 genome ...
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bioRxiv - Neuroscience 2023Quote: ... The barcoded libraries were pooled and sequenced on NovaSeq 6000 S4v1.5 (Illumina). Raw sequencing data was processed using Cellranger software v2.1 (10x Genomics ...
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bioRxiv - Neuroscience 2023Quote: ... Sequencing reads were demultiplexed by bcl2fastq2 v2.20.0 (Illumina) and aligned to the mouse genome mm10-2020-A with 10X Genomics Cell Ranger software pipeline 5.0.0 using the include-intron function (Supplemental Figure 1C).
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bioRxiv - Microbiology 2023Quote: ... RNA extracts from the microneutralisation and TCID50 experiments were used as input into the RNA Prep with Enrichment kit (Illumina Inc ...
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bioRxiv - Genomics 2023Quote: ... The Hi-C library was amplified using PE primers (Illumina) with 10 PCR amplification cycles ...
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bioRxiv - Genomics 2023Quote: ... Roughly 15% of each lysate was kept for RNA isolation and used for RNA-seq of poly(A)-enriched fractions on a HiSeq2500 platform (Illumina). After sequencing of both Ribo-and mRNA-seq libraries ...
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bioRxiv - Immunology 2023Quote: ... The knockout efficiency was evaluated by genotyping the polyclonal cell populations using MiSeq (Illumina). Successfully edited populations were diluted to a concentration of 0.5 cell/well and seeded in 96-well plates ...
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Genetic heterogeneity in the Salmonella Typhi Vi capsule locus: A population genomic study from FijibioRxiv - Microbiology 2023Quote: ... De novo draft genome assemblies were generated from Illumina short reads using SPAdes v v3.14.1 and were screened for known antimicrobial resistance determinants in AMRFinderPlus (https://github.com/MDU-PHL/abritamr ...
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bioRxiv - Microbiology 2023Quote: ... 200 ng of PCR product for each sample were normalized in 30 µl volume for NGS library construction using Illumina DNA Prep (M) Tagmentation kit (Illumina). IDT for Illumina Nextera DNA Unique Dual Indexes were used for pooling multiple samples together ...
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bioRxiv - Immunology 2023Quote: ... Sequencing was carried out on a NovaSeq6000 system (Illumina) and NextSeq500 using the following sequencing conditions ...
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bioRxiv - Genetics 2023Quote: ... scRNA-Seq libraries were constructed using Single Cell 3’ Library and Gel Bead Kit v3.1 (8,000 initial cell capture number) and were subsequently sequenced using a NovaSeq 6000 sequencer (Illumina).
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bioRxiv - Immunology 2023Quote: ... which were sequenced on a MiSeq (Illumina). Demultiplexed sequence reads were analyzed in the CLC Genomics Workbench v.23.0.1 by (1 ...
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bioRxiv - Genomics 2023Quote: All libraries were sequenced using a NextSeq500 (Illumina) at the Genomics platform of the UFR Sciences de la Santé (UVSQ ...
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bioRxiv - Genomics 2023Quote: ... All the libraries were sequenced with paired ends (150 cycles) using an iSeq100 sequencer (Illumina).
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bioRxiv - Cell Biology 2023Quote: ... performed on 24 cells/cell line using a NextSeq 500 (Illumina, San Diego, CA). Data analysis was performed as described previously69 ...
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bioRxiv - Microbiology 2023Quote: ... Library preparation was performed using Nextera XT libraries (for Illumina sequencing) and Native barcoding genomic DNA kit (EXP-NBD114/LSK109 ...
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bioRxiv - Molecular Biology 2023Quote: ... The resulting libraries were amplified using the NEBNext® Ultra™ DNA library prep kit for Illumina® using NEBNext® multiplex oligos for Illumina® and sequenced on a NextSeq 500 with onboard clustering using a 75-cycle high output v2.5 kit (Illumina) to generate paired-end 41-bp-long reads ...
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bioRxiv - Genetics 2023Quote: ... (Illumina, 20028318) with the 0,5% addition of control library Phix (Illumina ...
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bioRxiv - Microbiology 2023Quote: ... and libraries were paired-end sequenced (150 bp) on a NovaSeq 6000 (Illumina, San Diego, CA, USA) at Genome Quebec (Montréal ...
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bioRxiv - Immunology 2023Quote: Raw scRNA-seq reads generated by Illumina sequencer were demultiplexed into FASTQ and aligned to GRCh38 reference genome to generate count matrices using Cell Ranger v6.0.0 analysis pipelines (10x Genomics) ...
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bioRxiv - Immunology 2023Quote: ... V(D)J region-enriched libraries were pooled and sequenced using the NovaSeq 6000 Sequencing System (Illumina).
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bioRxiv - Immunology 2023Quote: ... Barcoded cDNA transcripts from patients were pooled and sequenced using the NovaSeq 6000 Sequencing System (Illumina). For single-cell TCR sequencing ...
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bioRxiv - Neuroscience 2023Quote: The RNA Seq library was generated using Illumina Tru-Seq stranded mRNA kit (Illumina 20020594) as per manufacturer’s instructions ...
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bioRxiv - Developmental Biology 2023Quote: ... Illumina sequencing libraries were prepared from the amplified cDNA from each sample group using the Nextra DNA library prep kit (Illumina) and then sequenced on Illumina HiSeq 2500 Rapid flowcells (Illumina ...
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bioRxiv - Cancer Biology 2023Quote: ... The denatured and diluted libraries were sequenced on a NextSeq 550 System (Illumina) using v2.5 High Output 300 cycle kit with 1% PhiX to an average sequencing depth of 50x coverage.
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bioRxiv - Cancer Biology 2023Quote: ... PCR master mix containing NPM PCR mix (Illumina), 1X SYBR Green dye and uniquely indexed PCR primers were added to each well ...
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bioRxiv - Cancer Biology 2023Quote: ... De-multiplexed Fastq files were generated using BCL Convert Conversion Software v4.0 (Illumina). Snakemake[9] was used to manage the bioinformatics workflow and ensure reproducibility.
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bioRxiv - Cancer Biology 2023Quote: ... Libraries were sequenced on the NextSeq500 (Illumina, San Diego, CA) instrument by paired-end sequencing (2 × 150-cycle protocol) ...
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bioRxiv - Cancer Biology 2023Quote: ... Libraries were paired-end sequenced (2×75 bp) on a NextSeq500 (Illumina). BclToFastq was used for the preprocessing of the raw data (trimming and filtering) ...
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bioRxiv - Cancer Biology 2023Quote: ... was added to the pooled amplicon library prior to running the sample on an Miseq Sequencer System (Illumina) to generate paired 2 × 250bp reads ...
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bioRxiv - Cancer Biology 2023Quote: ... Base calling was done by Illumina RTA3 and output of NCS was demultiplexed and converted to FastQ format with Illumina Bcl2fastq v1.9.0.
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bioRxiv - Cancer Biology 2023Quote: ... paired-end sequencing was performed on an Illumina NovaSeq6000 sequencer using an S2 sequencing kit (Illumina Inc., San Diego, CA, USA) to an average depth of 45M reads per sample ...
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bioRxiv - Cancer Biology 2023Quote: ... cDNA fragments were ligated to IDT for Illumina TruSeq UD Indexed adapters (Illumina Inc, San Diego CA, USA). Quality and quantity of the finished libraries were assessed using a combination of Agilent DNA High Sensitivity chip (Agilent Technologies ...
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bioRxiv - Cancer Biology 2023Quote: ... Paired-end DNA sequencing of the amplicons from all samples and both variables regions was completed in the same run on a MiSeq machine (M04141, Illumina, San Diego, CA, USA) using the 2x300 base pair chemistry (Reagent barcode ...