Labshake search
Citations for Illumina :
5301 - 5350 of 10000+ citations since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Genomics 2023Quote: ... Clip adapters from Illumina raw reads with the following commands with Cutadapt (Martin ...
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bioRxiv - Genomics 2023Quote: ... and 0.2 µg/µL of DNA was sequenced by Illumina MiSeq runs (Illumina Inc., San Diego, USA) using Nextera XT DNA library preparation kit ...
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bioRxiv - Genetics 2023Quote: ... Enriched DNA fragments were then cleaned up using AMPure XP beads and final DNA libraries eluted in 30 uL of RSB (Illumina #20020599).
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bioRxiv - Genetics 2023Quote: ... and genotyped on the Geneseek Genomic Profiler Equine Plus chip (based on Illumina’s Equine SNP70 platform) (performed by Neogen ...
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bioRxiv - Genetics 2023Quote: ... to 9 uL of FSA (Illumina #20020599). After cDNA synthesis ...
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bioRxiv - Genomics 2023Quote: ... The resulting dual-sgRNA sub-libraries were pooled in equal amounts for each sgRNA pair and validated by Illumina sequencing.
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bioRxiv - Genomics 2023Quote: ... The RNA library was prepared using TruSeq Stranded Total RNA Library Preparation kit with the Ribo-Zero Plant workflow (Illumina Inc., CA, USA). The transcriptome library was sequenced on Illumina NovaSeq 6000 instrument to generate 150 bp paired-end reads.
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bioRxiv - Genomics 2023Quote: ... Libraries were pooled in equimolar ratio and sequenced to different coverage depths on a single S4 flow cell on a NovaSeq6000 instrument (Illumina) to generate 150 bp paired-end reads.
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bioRxiv - Genomics 2023Quote: ... using the Illumina NextSeq 500/550 High Output Kit v2.5 (75 cycles) (Cat. #20024906, Illumina). Target depth was 5 – 10 million reads per sample.
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bioRxiv - Genomics 2023Quote: ... (2022) (TruSeq DNA PCR-free libraries sequenced on Illumina NovaSeq6000 ...
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bioRxiv - Genomics 2023Quote: ... and pellets were resuspended in the transposition reaction mix (25 µL 2X TD buffer (Illumina), 2.5 µL TDE1 Tn5 transposase (Illumina) ...
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bioRxiv - Genomics 2023Quote: ... 2.5 µL TDE1 Tn5 transposase (Illumina), 16.5 µL PBS ...
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bioRxiv - Genomics 2023Quote: ... All samples were then processed using the EPIC 850K array (Illumina Inc, CA, USA) according to the manufacturer’s instructions ...
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bioRxiv - Genomics 2023Quote: ... 10ng and 1ug of RNA (from nuclei and bulk, respectively) was used as input for TruSeq stranded Total RNA Library Prep Gold kit (Illumina 20020598) according to manufacturer’s protocol with TruSeq RNA UD Indexes (Illumina 20022371) ...
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bioRxiv - Genomics 2023Quote: ... Samples were sequenced using a NextSeq1000 (Illumina) with 50bp paired end reads at a sequencing depth of approximately 10-20 million reads per sample.
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bioRxiv - Genomics 2023Quote: ... Samples were sequenced using a NovaSeq SP kit (Illumina) with 50 bp paired-end reads at a sequencing depth of approximately 25 million reads per sample.
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bioRxiv - Genomics 2023Quote: ... Image analyses and base calling were performed using the Miniseq Control Software and the Real-Time Analysis component (Illumina). Demultiplexing was performed using Illumina’s conversion software (bcl2fastq 2.20.0.422) ...
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bioRxiv - Genomics 2023Quote: ... using the single read 100 nt protocol on 1 lane of a flow cell SP.Image analyses and base calling were performed using the Miniseq Control Software and the Real-Time Analysis component (Illumina). Demultiplexing was performed using Illumina’s conversion software (bcl2fastq 2.20.0.422) ...
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bioRxiv - Genomics 2023Quote: ... and dizygotic (DZ) twin pairs who had completed the questionnaires regarding puberty (see below) and had blood DNA methylation data (Illumina 450K or EPIC) in early adulthood available.
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bioRxiv - Genomics 2023Quote: ... The RNA sequencing libraries were generated with the TruSeq Stranded Total RNA with Ribo-Zero Plant kit (Illumina, San Diego, USA) and were sequenced on NovaSeq (Illumina ...
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bioRxiv - Genomics 2023Quote: ... Libraries were pooled according to nM and sequenced with 36 bp pair-end reads on the NextSeq 550 (Illumina) using the Illumina NextSeq 500/550 High Output Kit v2.5 (75 cycles ...
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bioRxiv - Genomics 2023Quote: ... RNA-seq with 50 bp reads was conducted at the University of Delaware on an Illumina genome sequencer (Illumina, Inc., San Diego, CA, USA). The data were viewed for initial quality through FastQC (v0.11.7) ...
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bioRxiv - Genomics 2023Quote: ... 96 libraries from 16 animals in batch 1 were performed using TruSeq RNA Library Preparation Kit v2 (RS-122-2001, RS-122-2002, Illumina) and were sequenced 50 base pairs ...
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bioRxiv - Genomics 2023Quote: ... DRAGMAP version 1.3.0 (https://github.com/Illumina/DRAGMAP) was used to map the reads to the reference genome ...
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bioRxiv - Genomics 2023Quote: ... 498 libraries from 83 animals in batch 2 were performed using TruSeq stranded mRNA Library Preparation Kit (20020595, Illumina) and were sequenced 50 base pairs ...
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bioRxiv - Genomics 2023Quote: ... 2.20 (Illumina, San Diego, USA), resulting in 51 Gb raw *fastq files ...
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bioRxiv - Genomics 2023Quote: ... The resulting sequencing libraries were sequenced using the MiSeq system (Illumina v.2 kit, 2 × 150 bp).
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bioRxiv - Genomics 2023Quote: ... Sequencing with standard Illumina primers was performed on a NextSeq 500/550 instrument (Illumina, San Diego, USA) with a read length of 150 + 150 bp (paired-end).
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bioRxiv - Genomics 2023Quote: ... We completed the mitochondrial genome by inspecting the mapping results and editing the gap regions usually spanned by Illumina- and/or ONT-reads.
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bioRxiv - Genomics 2023Quote: ... the DNA was purified and processed for library preparation using illumina Chip library prep (Illumina#15034288). Chip libraries were sequenced on illumina Hiseq3000 using single read 75 bp read-length.
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bioRxiv - Genetics 2023Quote: ... in a 100 µl reaction with 2 µl gDNA (∼100 ng) and primers oJMP697 and oJMP698 (nested primers with partial adapters for index PCR with Illumina TruSeq adapter) according to the manufacturer’s protocol using a BioRad C1000 thermal cycler with the following program ...
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bioRxiv - Genetics 2023Quote: Total RNA was converted into DNA libraries using a TruSeq Stranded Total RNA Library Prep Gold kit (Illumina #20020599) and 96-well plates (Thermo Scientific #N8010560 ...
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bioRxiv - Genetics 2023Quote: ... and the pool was sequenced on one lane of the Illumina HiSeq 4000 sequencer with a 75 bp Paired-End SBS chemistry (Illumina).
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bioRxiv - Genetics 2023Quote: ... Sequencing libraries were generated using the Illumina TruSeq Stranded mRNA sample preparation kit (Illumina, Inc., San Diego, CA) and following Illumina’s sample preparation guide ...
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bioRxiv - Microbiology 2023Quote: ... and for sequencing on the HiSeq4000 platform (Illumina). Raw reads (paired-end ...
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bioRxiv - Genomics 2023Quote: ... The PhiX Control library was spiked in the sequencing sample at 10% (v/v) (Illumina, cat. no. FC-110-3001).
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bioRxiv - Genomics 2023Quote: ... the pools were sequenced for 75 bp single-end with Nextseq 550 (Illumina™) sequencer at the EMBL Genomics Core Facility.
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bioRxiv - Genetics 2023Quote: ... Libraries were sequenced on a NextSeq 550 system (Illumina) with 37 bp PE reads.
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bioRxiv - Genetics 2023Quote: ... Libraries were sequenced on a NextSeq 550 system (Illumina) with 50 bp SE reads.
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bioRxiv - Genetics 2023Quote: ... unique dual indexed TruSeq Stranded mRNA sequencing libraries (Illumina, 20020595) were generated and sequenced by the University of Kansas Genome Sequencing Core ...
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bioRxiv - Genetics 2023Quote: ... and further processed with the Illumina Infinium HumanMethylation450 BeadChip (Illumina Inc., San Diego, USA). Preparation and normalization of the HumanMethylation450 BeadChip array data was performed following the CPACOR workflow using the software package R (Lehne et al. ...
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bioRxiv - Genetics 2023Quote: ... The libraries were pooled and sequenced on a HiSeq 3000 instrument (Illumina, San Diego, CA) to at least 20-fold coverage ...
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bioRxiv - Genetics 2023Quote: ... additional OGM findings were confirmed with the SOC methods karyotyping and the Infinium Global Screening Array-24 v3.0-EA-MD (SNP-Array) (Illumina, San Diego, CA), according to standard protocols ...
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bioRxiv - Genetics 2023Quote: ... Whole genomic sequencing was performed using an Illumina NovaSeq 6000 Sequencing System (Illumina Inc., San Diego, USA) via an outsourcing service (Macrogen Japan Corp. ...
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bioRxiv - Microbiology 2023Quote: ... Sequencing was performed on a NovaSeq 6000 platform (Illumina), generating 20 million 150-bp paired-end reads per sample.
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bioRxiv - Microbiology 2023Quote: ... Library preparation was performed using a TruSeq Stranded mRNA Library Prep Kit (Illumina) according to the manufacturer’s instructions ...
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bioRxiv - Genomics 2023Quote: ... 3) carried no SNP or indel within 50 bp in their 5’ or 3’ flanking regions (Illumina probe design requirement); and 4 ...
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bioRxiv - Genomics 2023Quote: Following chip manufacture by Illumina, genotypes were obtained both for the mapping families from Trial 1 (analysed in this report ...
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bioRxiv - Genomics 2023Quote: ... Genotype calling was performed using the GenomeStudio v2.0.5 software (Illumina), and genotype clusters were visually examined and manually curated when necessary to reject monomorphic and failed polymorphisms ...
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bioRxiv - Genetics 2023Quote: ... (2014)[32] used 825 samples and the gene expression data were generated from Illumina Human HT-12 V3 BeadChips ...